| Chain sequence(s) |
A: MKLLKVAAIAAIVFSGSALAGVVPQYGGGGNHGGGGNNSGPNSELNIYQYGGGNSALALQTDARNSDLTITQHGGGNGADVGQGSDDSSIDLTQRGFGNSATLDQWNGKNSEMTVKQFGGGNGAAVDQTASNSSVNVTQVGFGNNATAHQY
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:02)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:02)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:02)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:02)
[INFO] FoldX: Starting FoldX energy minimization (00:00:02)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:01:43)
[INFO] Main: Simulation completed successfully. (00:01:45)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 1 | M | A | 0.8375 | |
| 2 | K | A | -0.2311 | |
| 3 | L | A | 1.4275 | |
| 4 | L | A | 1.2296 | |
| 5 | K | A | -0.5015 | |
| 6 | V | A | 0.1609 | |
| 7 | A | A | -0.3527 | |
| 8 | A | A | 0.0836 | |
| 9 | I | A | 0.1779 | |
| 10 | A | A | 1.1812 | |
| 11 | A | A | 0.0000 | |
| 12 | I | A | 2.6472 | |
| 13 | V | A | 0.0000 | |
| 14 | F | A | 2.3186 | |
| 15 | S | A | 0.0000 | |
| 16 | G | A | -0.0592 | |
| 17 | S | A | -0.0401 | |
| 18 | A | A | 0.5502 | |
| 19 | L | A | 1.6421 | |
| 20 | A | A | 1.5142 | |
| 21 | G | A | 1.8821 | |
| 22 | V | A | 1.8698 | |
| 23 | V | A | 1.1160 | |
| 24 | P | A | 0.0728 | |
| 25 | Q | A | -0.7359 | |
| 26 | Y | A | 0.4515 | |
| 27 | G | A | -0.7742 | |
| 28 | G | A | -0.7531 | |
| 29 | G | A | -1.1187 | |
| 30 | G | A | -1.6806 | |
| 31 | N | A | -2.1874 | |
| 32 | H | A | -2.0108 | |
| 33 | G | A | -1.6310 | |
| 34 | G | A | -1.2250 | |
| 35 | G | A | -1.4424 | |
| 36 | G | A | -1.7607 | |
| 37 | N | A | -2.3365 | |
| 38 | N | A | -2.4013 | |
| 39 | S | A | -2.1070 | |
| 40 | G | A | -1.9322 | |
| 41 | P | A | -2.7982 | |
| 42 | N | A | -3.3088 | |
| 43 | S | A | 0.0000 | |
| 44 | E | A | -2.8059 | |
| 45 | L | A | 0.0000 | |
| 46 | N | A | -0.0788 | |
| 47 | I | A | 0.0000 | |
| 48 | Y | A | 0.8715 | |
| 49 | Q | A | 0.0000 | |
| 50 | Y | A | 0.0335 | |
| 51 | G | A | -0.3366 | |
| 52 | G | A | -0.3432 | |
| 53 | G | A | -0.3591 | |
| 54 | N | A | 0.0000 | |
| 55 | S | A | 0.6486 | |
| 56 | A | A | 0.0000 | |
| 57 | L | A | 1.3430 | |
| 58 | A | A | 0.0000 | |
| 59 | L | A | 0.9549 | |
| 60 | Q | A | 0.0000 | |
| 61 | T | A | -0.4867 | |
| 62 | D | A | -1.9692 | |
| 63 | A | A | 0.0000 | |
| 64 | R | A | -3.6612 | |
| 65 | N | A | -3.6683 | |
| 66 | S | A | 0.0000 | |
| 67 | D | A | -2.8355 | |
| 68 | L | A | 0.0000 | |
| 69 | T | A | -0.8487 | |
| 70 | I | A | 0.0000 | |
| 71 | T | A | -0.3782 | |
| 72 | Q | A | 0.0000 | |
| 73 | H | A | -0.9180 | |
| 74 | G | A | -0.5603 | |
| 75 | G | A | -0.2769 | |
| 76 | G | A | -0.2701 | |
| 77 | N | A | 0.0000 | |
| 78 | G | A | -0.2243 | |
| 79 | A | A | 0.0000 | |
| 80 | D | A | -0.9872 | |
| 81 | V | A | 0.0000 | |
| 82 | G | A | 0.0000 | |
| 83 | Q | A | 0.0000 | |
| 84 | G | A | -1.2960 | |
| 85 | S | A | 0.0000 | |
| 86 | D | A | -2.8171 | |
| 87 | D | A | -3.0569 | |
| 88 | S | A | 0.0000 | |
| 89 | S | A | -2.0332 | |
| 90 | I | A | 0.0000 | |
| 91 | D | A | -1.3896 | |
| 92 | L | A | 0.0000 | |
| 93 | T | A | 0.0000 | |
| 94 | Q | A | 0.0000 | |
| 95 | R | A | -1.0498 | |
| 96 | G | A | -0.0244 | |
| 97 | F | A | 1.1780 | |
| 98 | G | A | 0.1496 | |
| 99 | N | A | 0.0000 | |
| 100 | S | A | -0.5964 | |
| 101 | A | A | 0.0000 | |
| 102 | T | A | -0.7642 | |
| 103 | L | A | 0.0000 | |
| 104 | D | A | -0.8912 | |
| 105 | Q | A | 0.0000 | |
| 106 | W | A | -0.9601 | |
| 107 | N | A | -1.5149 | |
| 108 | G | A | 0.0000 | |
| 109 | K | A | -2.9180 | |
| 110 | N | A | -2.9146 | |
| 111 | S | A | 0.0000 | |
| 112 | E | A | -2.6973 | |
| 113 | M | A | 0.0000 | |
| 114 | T | A | -1.2682 | |
| 115 | V | A | 0.0000 | |
| 116 | K | A | -0.6056 | |
| 117 | Q | A | 0.0000 | |
| 118 | F | A | 0.8424 | |
| 119 | G | A | 0.9026 | |
| 120 | G | A | 0.9820 | |
| 121 | G | A | 0.1845 | |
| 122 | N | A | 0.0000 | |
| 123 | G | A | -0.7471 | |
| 124 | A | A | 0.0000 | |
| 125 | A | A | -0.7498 | |
| 126 | V | A | 0.0000 | |
| 127 | D | A | -0.9745 | |
| 128 | Q | A | 0.0000 | |
| 129 | T | A | -0.6496 | |
| 130 | A | A | -0.8696 | |
| 131 | S | A | -1.8983 | |
| 132 | N | A | -2.4259 | |
| 133 | S | A | -1.4843 | |
| 134 | S | A | -1.5936 | |
| 135 | V | A | 0.0000 | |
| 136 | N | A | -1.7148 | |
| 137 | V | A | 0.0000 | |
| 138 | T | A | -0.0748 | |
| 139 | Q | A | 0.0000 | |
| 140 | V | A | 1.8745 | |
| 141 | G | A | 1.4115 | |
| 142 | F | A | 1.8805 | |
| 143 | G | A | 0.0980 | |
| 144 | N | A | -0.4109 | |
| 145 | N | A | -1.4244 | |
| 146 | A | A | -0.7615 | |
| 147 | T | A | -0.6476 | |
| 148 | A | A | -0.9085 | |
| 149 | H | A | -1.1363 | |
| 150 | Q | A | -0.4226 | |
| 151 | Y | A | 0.6360 |