Chain sequence(s) |
A: MAMSLSGAVLSGMGSSFHNVGAKQSGVGTVRVGRKSELVVVAQRKKSLIYAVKSDGNILDDLNEATKKASDFVTDKTKEALADGEKTKDYIVEKTIEANETATEEAKKALDYVTEKGKEAGNKAAEFVEGKAEEAKNATKS
input PDB |
Selected Chain(s) | A |
Distance of aggregation | 10 Å |
FoldX usage | No |
pH calculations | No |
alphaCutter usage | No |
Dynamic mode | No |
Automated mutations | No |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:01) [INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:00:01) [INFO] Main: Simulation completed successfully. (00:00:02) |
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan4D score | mutation |
---|---|---|---|---|
1 | M | A | 1.3119 | |
2 | A | A | 1.1926 | |
3 | M | A | 1.5684 | |
4 | S | A | 1.0472 | |
5 | L | A | 1.4881 | |
6 | S | A | 0.3903 | |
7 | G | A | 0.3566 | |
8 | A | A | 1.1033 | |
9 | V | A | 2.3553 | |
10 | L | A | 2.1776 | |
11 | S | A | 0.9963 | |
12 | G | A | 0.4133 | |
13 | M | A | 0.4454 | |
14 | G | A | -0.1446 | |
15 | S | A | 0.0286 | |
16 | S | A | 0.2395 | |
17 | F | A | 1.1846 | |
18 | H | A | -0.3359 | |
19 | N | A | -0.5575 | |
20 | V | A | 0.7029 | |
21 | G | A | -0.4909 | |
22 | A | A | -1.1776 | |
23 | K | A | -2.2930 | |
24 | Q | A | -2.0901 | |
25 | S | A | -1.1387 | |
26 | G | A | -0.4759 | |
27 | V | A | 1.3046 | |
28 | G | A | 0.4722 | |
29 | T | A | 0.6918 | |
30 | V | A | 1.7852 | |
31 | R | A | -0.6057 | |
32 | V | A | 0.5431 | |
33 | G | A | -1.1585 | |
34 | R | A | -2.8443 | |
35 | K | A | -2.5763 | |
36 | S | A | -1.1719 | |
37 | E | A | -0.3289 | |
38 | L | A | 2.9307 | |
39 | V | A | 3.7142 | |
40 | V | A | 3.7696 | |
41 | V | A | 3.0827 | |
42 | A | A | 1.0302 | |
43 | Q | A | -1.3528 | |
44 | R | A | -3.1317 | |
45 | K | A | -3.5137 | |
46 | K | A | -3.0599 | |
47 | S | A | -1.1485 | |
48 | L | A | 1.3765 | |
49 | I | A | 3.5979 | |
50 | Y | A | 3.9193 | |
51 | A | A | 3.0629 | |
52 | V | A | 2.1091 | |
53 | K | A | -0.8591 | |
54 | S | A | -1.6392 | |
55 | D | A | -2.5456 | |
56 | G | A | -2.4906 | |
57 | N | A | -2.4141 | |
58 | I | A | -1.4093 | |
59 | L | A | -0.5871 | |
60 | D | A | -3.0107 | |
61 | D | A | -3.3261 | |
62 | L | A | -1.9153 | |
63 | N | A | -3.2871 | |
64 | E | A | -4.0932 | |
65 | A | A | -2.9541 | |
66 | T | A | -2.7931 | |
67 | K | A | -3.6879 | |
68 | K | A | -2.9865 | |
69 | A | A | -1.3991 | |
70 | S | A | -1.5932 | |
71 | D | A | -2.2313 | |
72 | F | A | -0.0919 | |
73 | V | A | 0.0952 | |
74 | T | A | -1.5126 | |
75 | D | A | -3.0077 | |
76 | K | A | -2.7517 | |
77 | T | A | -2.1900 | |
78 | K | A | -3.4306 | |
79 | E | A | -3.9074 | |
80 | A | A | -2.6117 | |
81 | L | A | -2.3585 | |
82 | A | A | -2.6434 | |
83 | D | A | -3.3806 | |
84 | G | A | -2.7063 | |
85 | E | A | -3.9025 | |
86 | K | A | -3.2830 | |
87 | T | A | -1.7109 | |
88 | K | A | -2.0276 | |
89 | D | A | -1.7647 | |
90 | Y | A | 0.2547 | |
91 | I | A | 1.2994 | |
92 | V | A | 1.2583 | |
93 | E | A | -1.1499 | |
94 | K | A | -1.2937 | |
95 | T | A | -0.1022 | |
96 | I | A | 0.0050 | |
97 | E | A | -2.2589 | |
98 | A | A | -1.6733 | |
99 | N | A | -2.5971 | |
100 | E | A | -3.0876 | |
101 | T | A | -2.4440 | |
102 | A | A | -2.2579 | |
103 | T | A | -2.9410 | |
104 | E | A | -4.0451 | |
105 | E | A | -3.9723 | |
106 | A | A | -2.5741 | |
107 | K | A | -3.2675 | |
108 | K | A | -3.1247 | |
109 | A | A | -0.9252 | |
110 | L | A | -0.1301 | |
111 | D | A | -1.8342 | |
112 | Y | A | -0.1101 | |
113 | V | A | 0.4187 | |
114 | T | A | -1.2850 | |
115 | E | A | -2.9116 | |
116 | K | A | -2.9906 | |
117 | G | A | -2.8899 | |
118 | K | A | -3.9903 | |
119 | E | A | -4.1361 | |
120 | A | A | -3.2696 | |
121 | G | A | -3.1102 | |
122 | N | A | -3.3793 | |
123 | K | A | -3.0767 | |
124 | A | A | -1.3984 | |
125 | A | A | -1.5657 | |
126 | E | A | -2.2819 | |
127 | F | A | 0.1301 | |
128 | V | A | -0.0370 | |
129 | E | A | -2.6107 | |
130 | G | A | -2.4414 | |
131 | K | A | -3.0058 | |
132 | A | A | -3.0053 | |
133 | E | A | -4.4341 | |
134 | E | A | -4.4997 | |
135 | A | A | -3.2449 | |
136 | K | A | -4.0268 | |
137 | N | A | -3.6426 | |
138 | A | A | -2.3260 | |
139 | T | A | -2.0388 | |
140 | K | A | -2.5171 | |
141 | S | A | -1.2690 |