Project name: 41d3ed9023a780a

Status: done

Started: 2026-04-15 14:53:07
Chain sequence(s) A: MVTTAPAGSVEGMVVEQSPRAKKVDLNKTRVKISIYKPKTTSATPKKEKVEEGRIIRTDPGAGTGRKGPGPGDNKISNLTAQQQEAQKQVDQIQEQKKMSEIVSANNKMLEQQKADKKGPGPGVNFKQIYYTVSVDAVKNPGDVFQDTVTVEDLKQRGIKKQVYLKLETTSKSDEVEAAFEGPGPGLENATVHMEFKPDAKAPAFYNLFSKKMAVYNNTATLEGRGSDGKQFKKTPDGKATDYRVVVDPVKPAYGPGPGGKYYVYLKDAAHADNIRTKEKKKVGDGYVFEENGVPRYIPAKKKAGKYTTEDGYIFDPRDITSDEGDAYGPGPGLIIQNYWQFSSQIGNFVWIQKKYSGTNFAELGIYITLFFLTPKKGLDLLLPSILFALPHFSSLPSLLDIFIGPGPGAAQRKYDEDQKKTEEKAKETKKARRSEEEYNRLPQQQLPKAEGPGPGKKAYEEAKKKAEDAQKKYDEGQKKTEEKARKKKEVQNAYVKYQRVQRNSRLNEKER
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
alphaCutter usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:06)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:06)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:06)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:06)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:09)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:09)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:14:20)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/41d3ed9023a780a/tmp/folded.pdb                (00:14:20)
[INFO]       Main:     Simulation completed successfully.                                          (00:17:27)
Show buried residues

Minimal score value
-6.1974
Maximal score value
3.9825
Average score
-1.4467
Total score value
-740.7239

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
1 M A 1.8937
2 V A 2.0955
3 T A 1.0087
4 T A 0.5086
5 A A 0.4218
6 P A -0.2910
7 A A -0.1039
8 G A -0.3071
9 S A 0.4379
10 V A 1.0111
11 E A -0.8264
12 G A -0.0170
13 M A 1.2497
14 V A 1.6354
15 V A 0.5460
16 E A -1.5117
17 Q A -1.8512
18 S A -1.8325
19 P A -1.8349
20 R A -2.6523
21 A A -1.7871
22 K A -2.8077
23 K A -2.1165
24 V A -0.2522
25 D A -0.8627
26 L A 0.0391
27 N A -1.6536
28 K A -2.2177
29 T A -1.4009
30 R A -2.0787
31 V A -0.4308
32 K A -0.4336
33 I A 0.9917
34 S A 0.8128
35 I A 1.1175
36 Y A 0.1246
37 K A -2.0590
38 P A -1.9254
39 K A -2.2791
40 T A -1.3696
41 T A -0.7052
42 S A -0.5181
43 A A -0.4253
44 T A -0.9203
45 P A -1.8269
46 K A -3.3907
47 K A -3.7356
48 E A -3.7498
49 K A -3.1523
50 V A -1.2226
51 E A -2.8814
52 E A -3.0526
53 G A -1.7894
54 R A -1.5644
55 I A 1.2929
56 I A 1.5370
57 R A -1.0896
58 T A -1.3083
59 D A -2.5255
60 P A -1.5500
61 G A -1.1392
62 A A -0.5238
63 G A -0.6988
64 T A -1.0808
65 G A -1.9754
66 R A -3.0618
67 K A -3.0622
68 G A -2.0547
69 P A -1.3774
70 G A -1.3413
71 P A -1.5202
72 G A -1.8203
73 D A -2.8219
74 N A -2.6216
75 K A -2.0733
76 I A 0.3204
77 S A -0.8959
78 N A -1.5999
79 L A -0.1049
80 T A -0.7986
81 A A -1.5694
82 Q A -2.8253
83 Q A -3.1785
84 Q A -3.4875
85 E A -4.0228
86 A A -3.1863
87 Q A -3.2159
88 K A -4.0440
89 Q A -3.1360
90 V A -1.5740
91 D A -3.1570
92 Q A -3.3291
93 I A -1.9387
94 Q A -3.3280
95 E A -4.3143
96 Q A -3.7688
97 K A -4.3332
98 K A -3.9749
99 M A -2.1945
100 S A -2.1176
101 E A -2.6175
102 I A -0.7072
103 V A 0.4666
104 S A -0.5299
105 A A -0.5391
106 N A -0.5198
107 N A -1.4054
108 K A -2.3192
109 M A -1.0156
110 L A -1.5394
111 E A -3.6012
112 Q A -3.7413
113 Q A -3.9749
114 K A -4.6302
115 A A -3.6255
116 D A -4.5903
117 K A -4.6462
118 K A -3.8204
119 G A -2.4511
120 P A -1.6595
121 G A -1.5102
122 P A -0.4346
123 G A -0.2697
124 V A 1.1212
125 N A 0.0217
126 F A 0.9196
127 K A -0.4449
128 Q A -0.6044
129 I A 0.0000
130 Y A 0.6504
131 Y A 0.7329
132 T A 0.2263
133 V A 0.1749
134 S A -1.3478
135 V A -1.9382
136 D A -2.5916
137 A A -1.5781
138 V A -1.1886
139 K A -2.3309
140 N A -2.0277
141 P A 0.0000
142 G A -1.9571
143 D A -2.1256
144 V A -0.0726
145 F A -0.5425
146 Q A -1.9719
147 D A -2.6063
148 T A -1.4440
149 V A -1.1290
150 T A -1.5488
151 V A -1.7337
152 E A -2.9608
153 D A -2.5135
154 L A 0.0000
155 K A -4.1356
156 Q A -3.7366
157 R A -3.9280
158 G A -3.3354
159 I A -2.7571
160 K A -3.5350
161 K A -3.2548
162 Q A -1.7567
163 V A 0.0000
164 Y A 0.8385
165 L A 1.2965
166 K A 0.7827
167 L A 0.1776
168 E A -0.1845
169 T A 0.0000
170 T A -0.5680
171 S A -1.9745
172 K A -2.6344
173 S A -2.4672
174 D A -3.2503
175 E A -3.3319
176 V A -1.8224
177 E A -2.5942
178 A A -2.0206
179 A A -1.4099
180 F A -1.2667
181 E A -2.0935
182 G A -1.2615
183 P A -0.6478
184 G A -0.5484
185 P A -0.4292
186 G A -0.5733
187 L A -0.0445
188 E A -1.9414
189 N A -1.5672
190 A A -0.3092
191 T A -0.1613
192 V A -0.4874
193 H A -1.2008
194 M A -1.1236
195 E A -1.7446
196 F A -0.1480
197 K A -1.7361
198 P A -1.5563
199 D A -2.5074
200 A A -1.9028
201 K A -2.1438
202 A A -1.1744
203 P A -0.3241
204 A A 0.2771
205 F A 1.6316
206 Y A 2.2058
207 N A 1.6993
208 L A 2.9231
209 F A 2.3895
210 S A -0.0186
211 K A -0.6264
212 K A -1.1749
213 M A 0.0368
214 A A -0.0303
215 V A 0.2454
216 Y A -0.0140
217 N A -1.5897
218 N A -1.7057
219 T A -0.2905
220 A A 0.1986
221 T A 1.1063
222 L A 0.2615
223 E A -1.9693
224 G A -2.2581
225 R A -3.4614
226 G A -2.5601
227 S A -2.1047
228 D A -3.0217
229 G A -2.7693
230 K A -3.5347
231 Q A -3.5737
232 F A -2.4041
233 K A -3.0600
234 K A -3.2726
235 T A -2.4007
236 P A -1.9530
237 D A -2.8808
238 G A -2.4445
239 K A -2.8151
240 A A -1.7895
241 T A -2.2534
242 D A -1.5388
243 Y A -0.1528
244 R A 0.1661
245 V A 2.9122
246 V A 2.7505
247 V A 2.4164
248 D A 0.0216
249 P A -0.1338
250 V A 0.3950
251 K A -1.0985
252 P A -0.3532
253 A A 0.1436
254 Y A 0.7170
255 G A -0.1125
256 P A -0.5455
257 G A -0.8303
258 P A -1.1065
259 G A -1.1609
260 G A -1.3534
261 K A -1.3388
262 Y A 1.5898
263 Y A 2.7987
264 V A 3.6767
265 Y A 2.3351
266 L A 0.2426
267 K A -1.9804
268 D A -2.6206
269 A A -1.5995
270 A A -1.6730
271 H A -2.3703
272 A A -1.7915
273 D A -2.5444
274 N A -1.9058
275 I A -0.2139
276 R A -1.8699
277 T A -1.6293
278 K A -3.5538
279 E A -4.3848
280 K A -4.0762
281 K A -3.6367
282 K A -2.7336
283 V A -0.8823
284 G A -1.4648
285 D A -2.2989
286 G A 0.0000
287 Y A -1.3554
288 V A -1.5831
289 F A -2.5214
290 E A -3.3592
291 E A -2.4037
292 N A -2.1044
293 G A -1.2166
294 V A 0.0188
295 P A -0.8930
296 R A -1.2598
297 Y A 0.4749
298 I A -0.0943
299 P A -1.2995
300 A A -2.0298
301 K A -2.9209
302 K A -2.8944
303 K A -2.5437
304 A A -1.8933
305 G A -2.0030
306 K A -2.5199
307 Y A 0.0000
308 T A -1.3193
309 T A -1.4643
310 E A -2.6323
311 D A -2.4891
312 G A -1.1857
313 Y A 0.3510
314 I A 0.0323
315 F A -0.3145
316 D A -1.2181
317 P A -2.0620
318 R A -2.7933
319 D A -2.6333
320 I A -1.6212
321 T A -1.3089
322 S A -1.8779
323 D A -2.9400
324 E A -3.3113
325 G A -2.8091
326 D A -2.8071
327 A A -1.3049
328 Y A -0.3965
329 G A -0.8477
330 P A -0.6347
331 G A -0.8483
332 P A -0.0823
333 G A 0.2708
334 L A 1.3803
335 I A 1.9145
336 I A 1.0244
337 Q A -0.1929
338 N A -0.1125
339 Y A 1.4571
340 W A 1.0025
341 Q A -0.7010
342 F A 0.5037
343 S A 0.6368
344 S A -0.2252
345 Q A -0.9921
346 I A 0.1920
347 G A -0.4793
348 N A 0.0146
349 F A 2.9321
350 V A 3.9328
351 W A 3.3947
352 I A 2.5702
353 Q A -0.5587
354 K A -2.2004
355 K A -2.4558
356 Y A -1.2015
357 S A -1.1329
358 G A -0.8562
359 T A -0.8755
360 N A -1.5098
361 F A -0.2041
362 A A -0.1515
363 E A -0.9652
364 L A 0.2735
365 G A 1.2960
366 I A 1.9271
367 Y A 2.1087
368 I A 2.6522
369 T A 2.7341
370 L A 3.0116
371 F A 3.1053
372 F A 3.3036
373 L A 2.8639
374 T A 1.0430
375 P A -0.5141
376 K A -1.9687
377 K A -2.3749
378 G A -0.6016
379 L A 0.4946
380 D A -0.6377
381 L A 1.1512
382 L A 0.0000
383 L A 1.8002
384 P A 1.7305
385 S A 1.6860
386 I A 2.2592
387 L A 2.7076
388 F A 2.7507
389 A A 1.3821
390 L A 1.5184
391 P A 0.2631
392 H A -0.3961
393 F A 0.0162
394 S A -0.0500
395 S A 0.4053
396 L A 1.5708
397 P A 1.1888
398 S A 1.5085
399 L A 2.8843
400 L A 2.8371
401 D A 1.1734
402 I A 3.9825
403 F A 3.8801
404 I A 3.6297
405 G A 1.0485
406 P A -0.3460
407 G A -0.3494
408 P A -1.0344
409 G A -1.5628
410 A A -1.6382
411 A A -1.9122
412 Q A -2.9503
413 R A -3.9603
414 K A -3.9313
415 Y A -2.6687
416 D A -3.9317
417 E A -5.2578
418 D A -5.3609
419 Q A -5.1828
420 K A -5.7567
421 K A -5.8097
422 T A -5.0431
423 E A -5.6650
424 E A -5.8665
425 K A -5.4871
426 A A -4.2490
427 K A -4.8223
428 E A -5.1316
429 T A -4.4301
430 K A -4.6269
431 K A -5.0100
432 A A -4.3226
433 R A -5.1970
434 R A -4.9457
435 S A -4.0253
436 E A -4.8278
437 E A -4.7922
438 E A -3.8422
439 Y A -1.9794
440 N A -2.7797
441 R A -2.3557
442 L A -0.1380
443 P A -0.8376
444 Q A -1.9844
445 Q A -1.9009
446 Q A -1.5373
447 L A 0.0524
448 P A -0.9165
449 K A -2.0108
450 A A -1.6591
451 E A -2.5610
452 G A -1.6026
453 P A -1.4391
454 G A -1.7807
455 P A -1.5816
456 G A -1.9343
457 K A -2.9179
458 K A -3.0516
459 A A -1.6557
460 Y A -1.4157
461 E A -2.9719
462 E A -2.9734
463 A A -2.5100
464 K A -3.4564
465 K A -4.4701
466 K A -4.4364
467 A A -3.9241
468 E A -4.7489
469 D A -4.7678
470 A A -3.7276
471 Q A -4.1677
472 K A -4.8510
473 K A -4.2818
474 Y A -2.7926
475 D A -4.1918
476 E A -4.9262
477 G A -4.0366
478 Q A -4.7445
479 K A -5.5270
480 K A -5.4058
481 T A -4.7536
482 E A -5.8258
483 E A -6.1974
484 K A -5.8262
485 A A -4.7778
486 R A -5.5469
487 K A -5.0267
488 K A -4.7850
489 K A -4.4722
490 E A -2.9894
491 V A -0.9493
492 Q A -1.9326
493 N A -1.8134
494 A A -0.4190
495 Y A 0.8758
496 V A 0.1158
497 K A -1.1910
498 Y A -0.3037
499 Q A -1.3484
500 R A -2.8143
501 V A -2.6504
502 Q A -3.0224
503 R A -3.4508
504 N A -3.0400
505 S A -2.4909
506 R A -3.1477
507 L A -3.4204
508 N A -4.1801
509 E A -4.6799
510 K A -4.4194
511 E A -4.6159
512 R A -4.6120
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is partially or entirely disordered. Average score is recommended for pH analysis.

pH
Average A4D Score
Max A4D Score
4.0 -1.2141 7.6088 View CSV PDB
4.5 -1.3327 7.4922 View CSV PDB
5.0 -1.4766 7.3603 View CSV PDB
5.5 -1.6096 7.2366 View CSV PDB
6.0 -1.6896 7.1524 View CSV PDB
6.5 -1.6886 7.1377 View CSV PDB
7.0 -1.6109 7.1923 View CSV PDB
7.5 -1.4831 7.253 View CSV PDB
8.0 -1.3285 7.3157 View CSV PDB
8.5 -1.1571 7.3789 View CSV PDB
9.0 -0.9714 7.4418 View CSV PDB