| Chain sequence(s) |
A: QCIQPGTGYNNGYFYSYWNDGHGGVTYCNGPGGQFSVNWSNSGNFVGGKGWQPGTKNKVINFSGSYNPNGNSYLSVYGWSRNPLIEYYIVENFGTYNPSTGATKLGEVTSDGSVYDIYRTTRVNQPSIIGTATFYQYWSVRRNHRSSGSVNTANHFNAWAQQGLTLGTMDYQIVAVEGYFSSGSASITVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:02)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:02)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:02)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:02)
[INFO] FoldX: Starting FoldX energy minimization (00:00:02)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:02:06)
[INFO] Main: Simulation completed successfully. (00:02:08)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 1 | Q | A | -0.7524 | |
| 2 | C | A | 0.1938 | |
| 3 | I | A | -0.0437 | |
| 4 | Q | A | -0.8258 | |
| 5 | P | A | -0.6877 | |
| 6 | G | A | -0.4448 | |
| 7 | T | A | 0.0246 | |
| 8 | G | A | 0.4394 | |
| 9 | Y | A | 0.8406 | |
| 10 | N | A | -0.4804 | |
| 11 | N | A | -1.4061 | |
| 12 | G | A | -0.7355 | |
| 13 | Y | A | -0.1983 | |
| 14 | F | A | 0.0000 | |
| 15 | Y | A | 0.2427 | |
| 16 | S | A | 0.2292 | |
| 17 | Y | A | 0.0000 | |
| 18 | W | A | -0.0907 | |
| 19 | N | A | -0.8784 | |
| 20 | D | A | -1.3246 | |
| 21 | G | A | -1.4764 | |
| 22 | H | A | -1.6476 | |
| 23 | G | A | -1.4525 | |
| 24 | G | A | -1.1971 | |
| 25 | V | A | -1.0338 | |
| 26 | T | A | -0.4342 | |
| 27 | Y | A | 0.0000 | |
| 28 | C | A | -0.2114 | |
| 29 | N | A | 0.0000 | |
| 30 | G | A | -0.8579 | |
| 31 | P | A | -1.0687 | |
| 32 | G | A | -1.0682 | |
| 33 | G | A | 0.0000 | |
| 34 | Q | A | -0.8768 | |
| 35 | F | A | 0.0000 | |
| 36 | S | A | -0.5410 | |
| 37 | V | A | 0.0000 | |
| 38 | N | A | -1.5373 | |
| 39 | W | A | 0.0000 | |
| 40 | S | A | -1.1687 | |
| 41 | N | A | -1.1433 | |
| 42 | S | A | 0.0000 | |
| 43 | G | A | 0.0000 | |
| 44 | N | A | -0.0086 | |
| 45 | F | A | 0.0000 | |
| 46 | V | A | 0.2412 | |
| 47 | G | A | 0.0000 | |
| 48 | G | A | 0.0000 | |
| 49 | K | A | 0.0000 | |
| 50 | G | A | 0.0000 | |
| 51 | W | A | 0.0174 | |
| 52 | Q | A | -0.3166 | |
| 53 | P | A | -0.4982 | |
| 54 | G | A | -0.7150 | |
| 55 | T | A | -0.9387 | |
| 56 | K | A | -1.8475 | |
| 57 | N | A | -1.8191 | |
| 58 | K | A | -0.5133 | |
| 59 | V | A | 0.7260 | |
| 60 | I | A | 0.0000 | |
| 61 | N | A | -0.8434 | |
| 62 | F | A | 0.0000 | |
| 63 | S | A | -0.7149 | |
| 64 | G | A | -0.5581 | |
| 65 | S | A | -0.7165 | |
| 66 | Y | A | -0.9039 | |
| 67 | N | A | -1.7711 | |
| 68 | P | A | -1.5871 | |
| 69 | N | A | -1.7400 | |
| 70 | G | A | -0.6064 | |
| 71 | N | A | 0.1359 | |
| 72 | S | A | 0.0000 | |
| 73 | Y | A | 0.0545 | |
| 74 | L | A | 0.0000 | |
| 75 | S | A | 0.0000 | |
| 76 | V | A | 0.0000 | |
| 77 | Y | A | 0.0000 | |
| 78 | G | A | 0.0000 | |
| 79 | W | A | 0.0000 | |
| 80 | S | A | 0.0000 | |
| 81 | R | A | -0.9228 | |
| 82 | N | A | -1.6096 | |
| 83 | P | A | -0.9470 | |
| 84 | L | A | -0.1134 | |
| 85 | I | A | 0.0000 | |
| 86 | E | A | 0.0000 | |
| 87 | Y | A | 0.0000 | |
| 88 | Y | A | 0.0000 | |
| 89 | I | A | 0.0000 | |
| 90 | V | A | 0.0000 | |
| 91 | E | A | 0.0000 | |
| 92 | N | A | -0.8888 | |
| 93 | F | A | -0.3383 | |
| 94 | G | A | -0.6578 | |
| 95 | T | A | -0.2737 | |
| 96 | Y | A | 0.3161 | |
| 97 | N | A | -0.2976 | |
| 98 | P | A | -0.1724 | |
| 99 | S | A | 0.0000 | |
| 100 | T | A | -0.5000 | |
| 101 | G | A | -0.8341 | |
| 102 | A | A | -0.8165 | |
| 103 | T | A | -1.0107 | |
| 104 | K | A | -1.8620 | |
| 105 | L | A | -1.0387 | |
| 106 | G | A | -1.4445 | |
| 107 | E | A | -1.9614 | |
| 108 | V | A | -0.9167 | |
| 109 | T | A | -0.5394 | |
| 110 | S | A | 0.0000 | |
| 111 | D | A | -0.9801 | |
| 112 | G | A | -0.9072 | |
| 113 | S | A | 0.0000 | |
| 114 | V | A | -0.9658 | |
| 115 | Y | A | 0.0000 | |
| 116 | D | A | -1.3900 | |
| 117 | I | A | 0.0000 | |
| 118 | Y | A | -1.1841 | |
| 119 | R | A | -0.9176 | |
| 120 | T | A | -0.5215 | |
| 121 | T | A | -0.1825 | |
| 122 | R | A | -0.4122 | |
| 123 | V | A | 0.5602 | |
| 124 | N | A | -1.0579 | |
| 125 | Q | A | -1.1339 | |
| 126 | P | A | -0.4326 | |
| 127 | S | A | 0.2202 | |
| 128 | I | A | 1.2072 | |
| 129 | I | A | 1.9570 | |
| 130 | G | A | 0.3941 | |
| 131 | T | A | -0.1906 | |
| 132 | A | A | -0.1255 | |
| 133 | T | A | -0.1405 | |
| 134 | F | A | 0.0000 | |
| 135 | Y | A | 0.3339 | |
| 136 | Q | A | -0.2110 | |
| 137 | Y | A | 0.0000 | |
| 138 | W | A | 0.0000 | |
| 139 | S | A | 0.0000 | |
| 140 | V | A | 0.0000 | |
| 141 | R | A | 0.0000 | |
| 142 | R | A | -2.6061 | |
| 143 | N | A | -2.5501 | |
| 144 | H | A | -1.9354 | |
| 145 | R | A | -1.2608 | |
| 146 | S | A | -0.6868 | |
| 147 | S | A | -0.7032 | |
| 148 | G | A | -0.7797 | |
| 149 | S | A | -0.4722 | |
| 150 | V | A | 0.0000 | |
| 151 | N | A | -0.5414 | |
| 152 | T | A | 0.0000 | |
| 153 | A | A | -1.3442 | |
| 154 | N | A | -1.2703 | |
| 155 | H | A | 0.0000 | |
| 156 | F | A | 0.0000 | |
| 157 | N | A | -2.1283 | |
| 158 | A | A | -1.6614 | |
| 159 | W | A | 0.0000 | |
| 160 | A | A | -1.3705 | |
| 161 | Q | A | -1.9897 | |
| 162 | Q | A | -1.7115 | |
| 163 | G | A | -1.2287 | |
| 164 | L | A | 0.0000 | |
| 165 | T | A | -0.7100 | |
| 166 | L | A | -0.5601 | |
| 167 | G | A | -0.8331 | |
| 168 | T | A | -0.7699 | |
| 169 | M | A | 0.0000 | |
| 170 | D | A | 0.0000 | |
| 171 | Y | A | 0.0000 | |
| 172 | Q | A | 0.0000 | |
| 173 | I | A | 0.0000 | |
| 174 | V | A | 0.0000 | |
| 175 | A | A | 0.0000 | |
| 176 | V | A | 0.0000 | |
| 177 | E | A | 0.1229 | |
| 178 | G | A | 0.0000 | |
| 179 | Y | A | 1.4736 | |
| 180 | F | A | 1.5530 | |
| 181 | S | A | 0.0000 | |
| 182 | S | A | -1.0564 | |
| 183 | G | A | -1.5854 | |
| 184 | S | A | -1.3048 | |
| 185 | A | A | 0.0000 | |
| 186 | S | A | -0.6759 | |
| 187 | I | A | 0.0000 | |
| 188 | T | A | -0.6869 | |
| 189 | V | A | 0.0000 | |
| 190 | S | A | -0.4018 |