Project name: 432e2dc2258ca95

Status: done

Started: 2025-02-22 06:09:59
Chain sequence(s) A: MEILDSGGVTMPTENGGADLDTLRHRKPRSDSSNGLLPDSVTVSDADVRDRVDSAVEDTQGKANLAGENEIRESGGEAGGNVDVRYTYRPSVPAHRRVRESPLSSDAIFKQSHAGLFNLCVVVLVAVNSRLIIENLMKYGWLIRTDFWFSSTSLRDWPLFMCCLSLSIFPLAAFTVEKLVLQKCISEPVVIILHIIITMTEVLYPVYVTLRCDSAFLSGVTLMLLTCIVWLKLVSYAHTNYDIRTLANSSDKANPEVSYYVSLKSLAYFMLAPTLCYQPSYPRSPCIRKGWVARQFAKLIIFTGFMGFIIEQYINPIVRNSKHPLKGDLLYGVERVLKLSVPNLYVWLCMFYCFFHLWLNILAELLCFGDREFYKDWWNAKSVGDYWRMWNMPVHKWMVRHVYFPCLRRNIPKVPAIILAFLVSAVFHELCIAVPCRLFKLWAFLGIMFQVPLVFITNYLQERFGSMVGNMIFWFTFCIFGQPMCVLLYYHDLMNRKGKMS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
alphaCutter usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:02)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:07:34)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/432e2dc2258ca95/tmp/folded.pdb                (00:07:34)
[INFO]       Main:     Simulation completed successfully.                                          (00:09:41)
Show buried residues

Minimal score value
-3.716
Maximal score value
4.963
Average score
0.0559
Total score value
28.0272

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
1 M A 0.6169
2 E A -0.0586
3 I A 1.5929
4 L A 1.0242
5 D A -0.8726
6 S A -0.8476
7 G A -0.8014
8 G A 0.1060
9 V A 1.6144
10 T A 1.1400
11 M A 1.2000
12 P A -0.0551
13 T A -1.1246
14 E A -2.6373
15 N A -2.5304
16 G A -1.7236
17 G A -1.1254
18 A A -1.1090
19 D A -1.5858
20 L A -0.0602
21 D A -1.2009
22 T A -0.4184
23 L A -0.0528
24 R A -2.0616
25 H A -3.0340
26 R A -3.7160
27 K A -3.3425
28 P A -2.5720
29 R A -3.0238
30 S A -2.0769
31 D A -2.4419
32 S A -1.5051
33 S A -1.3784
34 N A -1.3340
35 G A -0.0716
36 L A 1.7779
37 L A 1.6730
38 P A 0.0800
39 D A -1.2697
40 S A -0.0792
41 V A 1.6740
42 T A 1.1113
43 V A 1.6169
44 S A -0.3470
45 D A -2.1552
46 A A -2.1768
47 D A -2.3356
48 V A -1.4386
49 R A -3.1770
50 D A -3.4962
51 R A -2.4730
52 V A -0.6882
53 D A -1.6959
54 S A -2.0779
55 A A -1.3278
56 V A -1.2764
57 E A -2.9140
58 D A -3.3481
59 T A -2.3612
60 Q A -2.5998
61 G A -2.5310
62 K A -2.6249
63 A A -1.5728
64 N A -1.5814
65 L A -0.0709
66 A A -0.8658
67 G A -1.3805
68 E A -2.6543
69 N A -2.9546
70 E A -2.5804
71 I A -0.7357
72 R A -2.5463
73 E A -2.6617
74 S A -1.6785
75 G A -1.7767
76 G A -1.6677
77 E A -2.2665
78 A A -1.4641
79 G A -1.2378
80 G A -1.0728
81 N A -0.7327
82 V A 1.1672
83 D A 0.4880
84 V A 1.7023
85 R A 0.5066
86 Y A 1.6242
87 T A 1.3013
88 Y A 0.7266
89 R A 0.1893
90 P A 0.0717
91 S A 0.2444
92 V A 0.2377
93 P A -0.4345
94 A A 0.0000
95 H A 0.0000
96 R A -2.1504
97 R A -2.3190
98 V A -0.5124
99 R A -1.4253
100 E A -2.0099
101 S A 0.0000
102 P A -0.9151
103 L A -0.1816
104 S A -0.7088
105 S A -0.7765
106 D A -1.2756
107 A A -0.1406
108 I A 0.8794
109 F A 0.8977
110 K A -1.4479
111 Q A -1.7580
112 S A -1.0819
113 H A -0.9720
114 A A 0.0741
115 G A 0.6179
116 L A 2.3975
117 F A 2.6566
118 N A 1.8104
119 L A 3.9200
120 C A 3.9247
121 V A 4.1584
122 V A 4.9630
123 V A 4.9373
124 L A 4.2797
125 V A 4.2462
126 A A 2.9375
127 V A 2.9444
128 N A 1.9177
129 S A 1.1307
130 R A -0.3055
131 L A 1.1472
132 I A 1.1823
133 I A 0.8381
134 E A -1.0038
135 N A -0.0436
136 L A 0.7648
137 M A 0.5651
138 K A -1.0845
139 Y A 0.1004
140 G A 0.7558
141 W A 1.4786
142 L A 1.0344
143 I A 0.7320
144 R A -1.2249
145 T A -0.6327
146 D A -1.3547
147 F A 0.1453
148 W A 1.0228
149 F A 1.3382
150 S A 0.0047
151 S A -0.1262
152 T A -0.3964
153 S A 0.5793
154 L A 1.0297
155 R A -1.0619
156 D A 0.1512
157 W A 1.7692
158 P A 0.8816
159 L A 0.0000
160 F A 2.7495
161 M A 2.0551
162 C A 0.0000
163 C A 1.6905
164 L A 2.0028
165 S A 1.5037
166 L A 0.0000
167 S A 1.2930
168 I A 2.4218
169 F A 1.4020
170 P A 0.0000
171 L A 1.5700
172 A A 1.0050
173 A A 0.0000
174 F A 0.7321
175 T A 0.3516
176 V A 0.0000
177 E A 0.0000
178 K A -0.1759
179 L A -0.0348
180 V A -0.3459
181 L A -0.1574
182 Q A -1.3727
183 K A -1.6976
184 C A -0.0581
185 I A 0.1736
186 S A -0.2922
187 E A -0.6985
188 P A 0.5436
189 V A 2.0561
190 V A 0.0000
191 I A 2.6138
192 I A 3.9230
193 L A 3.2875
194 H A 0.0000
195 I A 4.1469
196 I A 3.7322
197 I A 2.6096
198 T A 1.8431
199 M A 2.1614
200 T A 1.4855
201 E A 0.0000
202 V A 0.0000
203 L A 1.1655
204 Y A 1.1121
205 P A 0.0000
206 V A 0.0000
207 Y A 0.9913
208 V A 0.2543
209 T A 0.0000
210 L A -0.3860
211 R A -1.5714
212 C A -1.3739
213 D A -2.2335
214 S A -0.8836
215 A A -0.0211
216 F A 0.8360
217 L A 1.6914
218 S A 1.2936
219 G A 0.0000
220 V A 1.5052
221 T A 1.3099
222 L A 0.0000
223 M A 0.0000
224 L A 1.5670
225 L A 1.2788
226 T A 0.0000
227 C A 0.0000
228 I A 0.9895
229 V A 0.0000
230 W A 0.6970
231 L A 0.0000
232 K A 0.0000
233 L A 0.0000
234 V A 0.4133
235 S A 0.0000
236 Y A 0.0000
237 A A 0.3958
238 H A -0.0963
239 T A 0.0000
240 N A 0.0000
241 Y A 0.4340
242 D A 0.0000
243 I A 0.6114
244 R A 0.0000
245 T A -0.2080
246 L A 0.0641
247 A A -1.0291
248 N A -1.7736
249 S A -1.6164
250 S A -2.1502
251 D A -3.0830
252 K A -2.9804
253 A A -1.9685
254 N A -2.1628
255 P A -1.8304
256 E A -1.7034
257 V A -0.0573
258 S A 0.1910
259 Y A 0.8173
260 Y A 1.4872
261 V A 0.0000
262 S A 0.0330
263 L A 0.0370
264 K A -1.2781
265 S A -0.5908
266 L A 0.0000
267 A A 0.2225
268 Y A 0.3768
269 F A 0.0000
270 M A 0.8116
271 L A 1.6809
272 A A 0.0000
273 P A 0.0000
274 T A 0.0000
275 L A 0.0000
276 C A 0.0000
277 Y A 0.0000
278 Q A 0.0000
279 P A -0.0504
280 S A -0.6988
281 Y A 0.0000
282 P A -1.3533
283 R A -1.4835
284 S A -0.2987
285 P A -0.2948
286 C A 0.3854
287 I A 0.2612
288 R A -1.5883
289 K A -2.2370
290 G A -1.6776
291 W A -1.2787
292 V A 0.0000
293 A A -1.2690
294 R A -1.9183
295 Q A 0.0000
296 F A 0.9726
297 A A 0.8099
298 K A 0.7191
299 L A 2.0848
300 I A 3.4124
301 I A 3.5625
302 F A 2.8151
303 T A 2.1820
304 G A 2.0423
305 F A 2.7094
306 M A 1.8199
307 G A 0.0000
308 F A 1.4243
309 I A 0.0000
310 I A 0.8416
311 E A 0.3998
312 Q A 0.0000
313 Y A 0.5256
314 I A 0.0000
315 N A -0.5978
316 P A -0.7534
317 I A -1.0886
318 V A 0.0000
319 R A -2.7793
320 N A -2.4439
321 S A 0.0000
322 K A -2.5717
323 H A -1.5897
324 P A 0.0000
325 L A 0.2753
326 K A -1.7026
327 G A -1.0878
328 D A -0.5513
329 L A 1.4417
330 L A 1.7103
331 Y A 0.4043
332 G A 0.2582
333 V A 0.9715
334 E A -0.8837
335 R A -0.8291
336 V A 0.3842
337 L A 0.0855
338 K A -1.3821
339 L A 0.0000
340 S A 0.0000
341 V A 1.2549
342 P A 0.7067
343 N A 0.7141
344 L A 1.1542
345 Y A 1.3202
346 V A 1.3765
347 W A 1.0775
348 L A 1.0872
349 C A 0.0000
350 M A 1.0264
351 F A 0.0000
352 Y A 0.9852
353 C A 0.0000
354 F A 0.9246
355 F A 0.0000
356 H A 0.0000
357 L A 0.0000
358 W A 0.9690
359 L A 0.0000
360 N A 0.0000
361 I A 0.0000
362 L A 0.9125
363 A A 0.0000
364 E A 0.0000
365 L A 0.9031
366 L A 0.9795
367 C A 0.1362
368 F A 0.0000
369 G A 0.0000
370 D A 0.0000
371 R A 0.0000
372 E A -1.1033
373 F A 0.0000
374 Y A 0.0000
375 K A -1.2417
376 D A -1.1581
377 W A 0.0000
378 W A -0.6260
379 N A -1.3256
380 A A 0.0000
381 K A -1.3790
382 S A 0.0000
383 V A 0.0000
384 G A -0.2251
385 D A -1.0592
386 Y A -0.5885
387 W A -0.0766
388 R A -0.7043
389 M A -0.7150
390 W A -0.2615
391 N A -0.3173
392 M A 0.0000
393 P A -0.1235
394 V A 0.2115
395 H A -0.1566
396 K A -0.2297
397 W A 0.0000
398 M A 0.0000
399 V A 0.4527
400 R A 0.0000
401 H A 0.0000
402 V A 0.6537
403 Y A 0.6358
404 F A 0.1432
405 P A -0.4409
406 C A 0.0000
407 L A -0.8117
408 R A -1.1001
409 R A -2.3614
410 N A -2.0651
411 I A -0.7107
412 P A -0.7003
413 K A -0.5824
414 V A 1.3672
415 P A 0.9331
416 A A 0.0000
417 I A 1.3863
418 I A 1.6315
419 L A 1.5212
420 A A 0.0000
421 F A 0.0000
422 L A 1.7729
423 V A 1.4327
424 S A 0.0000
425 A A 0.0000
426 V A 2.2120
427 F A 1.2543
428 H A 0.7282
429 E A 0.0000
430 L A 1.2117
431 C A 0.8915
432 I A 0.9719
433 A A 0.0000
434 V A 0.0000
435 P A 0.3044
436 C A 0.0000
437 R A -0.1797
438 L A 0.7219
439 F A 1.8544
440 K A 0.7001
441 L A 1.7298
442 W A 1.1169
443 A A 0.0000
444 F A 1.9863
445 L A 1.9206
446 G A 1.4825
447 I A 0.0000
448 M A 1.7692
449 F A 2.1983
450 Q A 1.3589
451 V A 0.0000
452 P A 1.4314
453 L A 1.7729
454 V A 1.7110
455 F A 2.5024
456 I A 2.4659
457 T A 0.0000
458 N A 0.0806
459 Y A 1.2049
460 L A 0.6353
461 Q A -0.5317
462 E A -1.8458
463 R A -1.5573
464 F A 0.8585
465 G A -0.1550
466 S A -0.3935
467 M A 1.1520
468 V A 0.9393
469 G A 0.0000
470 N A 0.2092
471 M A 1.4972
472 I A 1.3883
473 F A 0.0000
474 W A 1.4561
475 F A 2.1044
476 T A 1.6547
477 F A 0.0000
478 C A 1.6891
479 I A 1.9496
480 F A 2.4342
481 G A 0.0000
482 Q A 0.6634
483 P A 0.5735
484 M A 0.0000
485 C A 0.9351
486 V A 0.5375
487 L A 0.0000
488 L A 0.5651
489 Y A 0.0000
490 Y A 0.2860
491 H A 0.0000
492 D A -0.6999
493 L A 0.0000
494 M A -1.3815
495 N A -2.0680
496 R A -1.8501
497 K A -2.1582
498 G A -2.0311
499 K A -2.0874
500 M A -0.5875
501 S A -0.7429
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is partially or entirely disordered. Average score is recommended for pH analysis.

pH
Average A4D Score
Max A4D Score
4.0 0.3557 6.0319 View CSV PDB
4.5 0.3053 5.9995 View CSV PDB
5.0 0.2444 5.9583 View CSV PDB
5.5 0.1834 5.9153 View CSV PDB
6.0 0.1334 5.9291 View CSV PDB
6.5 0.1014 5.9955 View CSV PDB
7.0 0.0878 6.0696 View CSV PDB
7.5 0.0879 6.1465 View CSV PDB
8.0 0.0969 6.2241 View CSV PDB
8.5 0.1137 6.3012 View CSV PDB
9.0 0.1402 6.3762 View CSV PDB