Chain sequence(s) |
A: MEILDSGGVTMPTENGGADLDTLRHRKPRSDSSNGLLPDSVTVSDADVRDRVDSAVEDTQGKANLAGENEIRESGGEAGGNVDVRYTYRPSVPAHRRVRESPLSSDAIFKQSHAGLFNLCVVVLVAVNSRLIIENLMKYGWLIRTDFWFSSTSLRDWPLFMCCLSLSIFPLAAFTVEKLVLQKCISEPVVIILHIIITMTEVLYPVYVTLRCDSAFLSGVTLMLLTCIVWLKLVSYAHTNYDIRTLANSSDKANPEVSYYVSLKSLAYFMLAPTLCYQPSYPRSPCIRKGWVARQFAKLIIFTGFMGFIIEQYINPIVRNSKHPLKGDLLYGVERVLKLSVPNLYVWLCMFYCFFHLWLNILAELLCFGDREFYKDWWNAKSVGDYWRMWNMPVHKWMVRHVYFPCLRRNIPKVPAIILAFLVSAVFHELCIAVPCRLFKLWAFLGIMFQVPLVFITNYLQERFGSMVGNMIFWFTFCIFGQPMCVLLYYHDLMNRKGKMS
input PDB |
Selected Chain(s) | A |
Distance of aggregation | 10 Å |
FoldX usage | Yes |
pH calculations | Yes |
alphaCutter usage | No |
Dynamic mode | No |
Automated mutations | No |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] PDB-Info: The input structure is partially or entirely disordered. Average score is recommended for pH analysis. (00:00:02) [INFO] FoldX: Starting FoldX energy minimization (00:00:02) [INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:07:34) [INFO] agg3D: Running pKa-ANI on /STORAGE/DATA/lcbio/aggreskan/432e2dc2258ca95/tmp/folded.pdb (00:07:34) [INFO] Main: Simulation completed successfully. (00:09:41) |
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan4D score | mutation |
---|---|---|---|---|
1 | M | A | 0.6169 | |
2 | E | A | -0.0586 | |
3 | I | A | 1.5929 | |
4 | L | A | 1.0242 | |
5 | D | A | -0.8726 | |
6 | S | A | -0.8476 | |
7 | G | A | -0.8014 | |
8 | G | A | 0.1060 | |
9 | V | A | 1.6144 | |
10 | T | A | 1.1400 | |
11 | M | A | 1.2000 | |
12 | P | A | -0.0551 | |
13 | T | A | -1.1246 | |
14 | E | A | -2.6373 | |
15 | N | A | -2.5304 | |
16 | G | A | -1.7236 | |
17 | G | A | -1.1254 | |
18 | A | A | -1.1090 | |
19 | D | A | -1.5858 | |
20 | L | A | -0.0602 | |
21 | D | A | -1.2009 | |
22 | T | A | -0.4184 | |
23 | L | A | -0.0528 | |
24 | R | A | -2.0616 | |
25 | H | A | -3.0340 | |
26 | R | A | -3.7160 | |
27 | K | A | -3.3425 | |
28 | P | A | -2.5720 | |
29 | R | A | -3.0238 | |
30 | S | A | -2.0769 | |
31 | D | A | -2.4419 | |
32 | S | A | -1.5051 | |
33 | S | A | -1.3784 | |
34 | N | A | -1.3340 | |
35 | G | A | -0.0716 | |
36 | L | A | 1.7779 | |
37 | L | A | 1.6730 | |
38 | P | A | 0.0800 | |
39 | D | A | -1.2697 | |
40 | S | A | -0.0792 | |
41 | V | A | 1.6740 | |
42 | T | A | 1.1113 | |
43 | V | A | 1.6169 | |
44 | S | A | -0.3470 | |
45 | D | A | -2.1552 | |
46 | A | A | -2.1768 | |
47 | D | A | -2.3356 | |
48 | V | A | -1.4386 | |
49 | R | A | -3.1770 | |
50 | D | A | -3.4962 | |
51 | R | A | -2.4730 | |
52 | V | A | -0.6882 | |
53 | D | A | -1.6959 | |
54 | S | A | -2.0779 | |
55 | A | A | -1.3278 | |
56 | V | A | -1.2764 | |
57 | E | A | -2.9140 | |
58 | D | A | -3.3481 | |
59 | T | A | -2.3612 | |
60 | Q | A | -2.5998 | |
61 | G | A | -2.5310 | |
62 | K | A | -2.6249 | |
63 | A | A | -1.5728 | |
64 | N | A | -1.5814 | |
65 | L | A | -0.0709 | |
66 | A | A | -0.8658 | |
67 | G | A | -1.3805 | |
68 | E | A | -2.6543 | |
69 | N | A | -2.9546 | |
70 | E | A | -2.5804 | |
71 | I | A | -0.7357 | |
72 | R | A | -2.5463 | |
73 | E | A | -2.6617 | |
74 | S | A | -1.6785 | |
75 | G | A | -1.7767 | |
76 | G | A | -1.6677 | |
77 | E | A | -2.2665 | |
78 | A | A | -1.4641 | |
79 | G | A | -1.2378 | |
80 | G | A | -1.0728 | |
81 | N | A | -0.7327 | |
82 | V | A | 1.1672 | |
83 | D | A | 0.4880 | |
84 | V | A | 1.7023 | |
85 | R | A | 0.5066 | |
86 | Y | A | 1.6242 | |
87 | T | A | 1.3013 | |
88 | Y | A | 0.7266 | |
89 | R | A | 0.1893 | |
90 | P | A | 0.0717 | |
91 | S | A | 0.2444 | |
92 | V | A | 0.2377 | |
93 | P | A | -0.4345 | |
94 | A | A | 0.0000 | |
95 | H | A | 0.0000 | |
96 | R | A | -2.1504 | |
97 | R | A | -2.3190 | |
98 | V | A | -0.5124 | |
99 | R | A | -1.4253 | |
100 | E | A | -2.0099 | |
101 | S | A | 0.0000 | |
102 | P | A | -0.9151 | |
103 | L | A | -0.1816 | |
104 | S | A | -0.7088 | |
105 | S | A | -0.7765 | |
106 | D | A | -1.2756 | |
107 | A | A | -0.1406 | |
108 | I | A | 0.8794 | |
109 | F | A | 0.8977 | |
110 | K | A | -1.4479 | |
111 | Q | A | -1.7580 | |
112 | S | A | -1.0819 | |
113 | H | A | -0.9720 | |
114 | A | A | 0.0741 | |
115 | G | A | 0.6179 | |
116 | L | A | 2.3975 | |
117 | F | A | 2.6566 | |
118 | N | A | 1.8104 | |
119 | L | A | 3.9200 | |
120 | C | A | 3.9247 | |
121 | V | A | 4.1584 | |
122 | V | A | 4.9630 | |
123 | V | A | 4.9373 | |
124 | L | A | 4.2797 | |
125 | V | A | 4.2462 | |
126 | A | A | 2.9375 | |
127 | V | A | 2.9444 | |
128 | N | A | 1.9177 | |
129 | S | A | 1.1307 | |
130 | R | A | -0.3055 | |
131 | L | A | 1.1472 | |
132 | I | A | 1.1823 | |
133 | I | A | 0.8381 | |
134 | E | A | -1.0038 | |
135 | N | A | -0.0436 | |
136 | L | A | 0.7648 | |
137 | M | A | 0.5651 | |
138 | K | A | -1.0845 | |
139 | Y | A | 0.1004 | |
140 | G | A | 0.7558 | |
141 | W | A | 1.4786 | |
142 | L | A | 1.0344 | |
143 | I | A | 0.7320 | |
144 | R | A | -1.2249 | |
145 | T | A | -0.6327 | |
146 | D | A | -1.3547 | |
147 | F | A | 0.1453 | |
148 | W | A | 1.0228 | |
149 | F | A | 1.3382 | |
150 | S | A | 0.0047 | |
151 | S | A | -0.1262 | |
152 | T | A | -0.3964 | |
153 | S | A | 0.5793 | |
154 | L | A | 1.0297 | |
155 | R | A | -1.0619 | |
156 | D | A | 0.1512 | |
157 | W | A | 1.7692 | |
158 | P | A | 0.8816 | |
159 | L | A | 0.0000 | |
160 | F | A | 2.7495 | |
161 | M | A | 2.0551 | |
162 | C | A | 0.0000 | |
163 | C | A | 1.6905 | |
164 | L | A | 2.0028 | |
165 | S | A | 1.5037 | |
166 | L | A | 0.0000 | |
167 | S | A | 1.2930 | |
168 | I | A | 2.4218 | |
169 | F | A | 1.4020 | |
170 | P | A | 0.0000 | |
171 | L | A | 1.5700 | |
172 | A | A | 1.0050 | |
173 | A | A | 0.0000 | |
174 | F | A | 0.7321 | |
175 | T | A | 0.3516 | |
176 | V | A | 0.0000 | |
177 | E | A | 0.0000 | |
178 | K | A | -0.1759 | |
179 | L | A | -0.0348 | |
180 | V | A | -0.3459 | |
181 | L | A | -0.1574 | |
182 | Q | A | -1.3727 | |
183 | K | A | -1.6976 | |
184 | C | A | -0.0581 | |
185 | I | A | 0.1736 | |
186 | S | A | -0.2922 | |
187 | E | A | -0.6985 | |
188 | P | A | 0.5436 | |
189 | V | A | 2.0561 | |
190 | V | A | 0.0000 | |
191 | I | A | 2.6138 | |
192 | I | A | 3.9230 | |
193 | L | A | 3.2875 | |
194 | H | A | 0.0000 | |
195 | I | A | 4.1469 | |
196 | I | A | 3.7322 | |
197 | I | A | 2.6096 | |
198 | T | A | 1.8431 | |
199 | M | A | 2.1614 | |
200 | T | A | 1.4855 | |
201 | E | A | 0.0000 | |
202 | V | A | 0.0000 | |
203 | L | A | 1.1655 | |
204 | Y | A | 1.1121 | |
205 | P | A | 0.0000 | |
206 | V | A | 0.0000 | |
207 | Y | A | 0.9913 | |
208 | V | A | 0.2543 | |
209 | T | A | 0.0000 | |
210 | L | A | -0.3860 | |
211 | R | A | -1.5714 | |
212 | C | A | -1.3739 | |
213 | D | A | -2.2335 | |
214 | S | A | -0.8836 | |
215 | A | A | -0.0211 | |
216 | F | A | 0.8360 | |
217 | L | A | 1.6914 | |
218 | S | A | 1.2936 | |
219 | G | A | 0.0000 | |
220 | V | A | 1.5052 | |
221 | T | A | 1.3099 | |
222 | L | A | 0.0000 | |
223 | M | A | 0.0000 | |
224 | L | A | 1.5670 | |
225 | L | A | 1.2788 | |
226 | T | A | 0.0000 | |
227 | C | A | 0.0000 | |
228 | I | A | 0.9895 | |
229 | V | A | 0.0000 | |
230 | W | A | 0.6970 | |
231 | L | A | 0.0000 | |
232 | K | A | 0.0000 | |
233 | L | A | 0.0000 | |
234 | V | A | 0.4133 | |
235 | S | A | 0.0000 | |
236 | Y | A | 0.0000 | |
237 | A | A | 0.3958 | |
238 | H | A | -0.0963 | |
239 | T | A | 0.0000 | |
240 | N | A | 0.0000 | |
241 | Y | A | 0.4340 | |
242 | D | A | 0.0000 | |
243 | I | A | 0.6114 | |
244 | R | A | 0.0000 | |
245 | T | A | -0.2080 | |
246 | L | A | 0.0641 | |
247 | A | A | -1.0291 | |
248 | N | A | -1.7736 | |
249 | S | A | -1.6164 | |
250 | S | A | -2.1502 | |
251 | D | A | -3.0830 | |
252 | K | A | -2.9804 | |
253 | A | A | -1.9685 | |
254 | N | A | -2.1628 | |
255 | P | A | -1.8304 | |
256 | E | A | -1.7034 | |
257 | V | A | -0.0573 | |
258 | S | A | 0.1910 | |
259 | Y | A | 0.8173 | |
260 | Y | A | 1.4872 | |
261 | V | A | 0.0000 | |
262 | S | A | 0.0330 | |
263 | L | A | 0.0370 | |
264 | K | A | -1.2781 | |
265 | S | A | -0.5908 | |
266 | L | A | 0.0000 | |
267 | A | A | 0.2225 | |
268 | Y | A | 0.3768 | |
269 | F | A | 0.0000 | |
270 | M | A | 0.8116 | |
271 | L | A | 1.6809 | |
272 | A | A | 0.0000 | |
273 | P | A | 0.0000 | |
274 | T | A | 0.0000 | |
275 | L | A | 0.0000 | |
276 | C | A | 0.0000 | |
277 | Y | A | 0.0000 | |
278 | Q | A | 0.0000 | |
279 | P | A | -0.0504 | |
280 | S | A | -0.6988 | |
281 | Y | A | 0.0000 | |
282 | P | A | -1.3533 | |
283 | R | A | -1.4835 | |
284 | S | A | -0.2987 | |
285 | P | A | -0.2948 | |
286 | C | A | 0.3854 | |
287 | I | A | 0.2612 | |
288 | R | A | -1.5883 | |
289 | K | A | -2.2370 | |
290 | G | A | -1.6776 | |
291 | W | A | -1.2787 | |
292 | V | A | 0.0000 | |
293 | A | A | -1.2690 | |
294 | R | A | -1.9183 | |
295 | Q | A | 0.0000 | |
296 | F | A | 0.9726 | |
297 | A | A | 0.8099 | |
298 | K | A | 0.7191 | |
299 | L | A | 2.0848 | |
300 | I | A | 3.4124 | |
301 | I | A | 3.5625 | |
302 | F | A | 2.8151 | |
303 | T | A | 2.1820 | |
304 | G | A | 2.0423 | |
305 | F | A | 2.7094 | |
306 | M | A | 1.8199 | |
307 | G | A | 0.0000 | |
308 | F | A | 1.4243 | |
309 | I | A | 0.0000 | |
310 | I | A | 0.8416 | |
311 | E | A | 0.3998 | |
312 | Q | A | 0.0000 | |
313 | Y | A | 0.5256 | |
314 | I | A | 0.0000 | |
315 | N | A | -0.5978 | |
316 | P | A | -0.7534 | |
317 | I | A | -1.0886 | |
318 | V | A | 0.0000 | |
319 | R | A | -2.7793 | |
320 | N | A | -2.4439 | |
321 | S | A | 0.0000 | |
322 | K | A | -2.5717 | |
323 | H | A | -1.5897 | |
324 | P | A | 0.0000 | |
325 | L | A | 0.2753 | |
326 | K | A | -1.7026 | |
327 | G | A | -1.0878 | |
328 | D | A | -0.5513 | |
329 | L | A | 1.4417 | |
330 | L | A | 1.7103 | |
331 | Y | A | 0.4043 | |
332 | G | A | 0.2582 | |
333 | V | A | 0.9715 | |
334 | E | A | -0.8837 | |
335 | R | A | -0.8291 | |
336 | V | A | 0.3842 | |
337 | L | A | 0.0855 | |
338 | K | A | -1.3821 | |
339 | L | A | 0.0000 | |
340 | S | A | 0.0000 | |
341 | V | A | 1.2549 | |
342 | P | A | 0.7067 | |
343 | N | A | 0.7141 | |
344 | L | A | 1.1542 | |
345 | Y | A | 1.3202 | |
346 | V | A | 1.3765 | |
347 | W | A | 1.0775 | |
348 | L | A | 1.0872 | |
349 | C | A | 0.0000 | |
350 | M | A | 1.0264 | |
351 | F | A | 0.0000 | |
352 | Y | A | 0.9852 | |
353 | C | A | 0.0000 | |
354 | F | A | 0.9246 | |
355 | F | A | 0.0000 | |
356 | H | A | 0.0000 | |
357 | L | A | 0.0000 | |
358 | W | A | 0.9690 | |
359 | L | A | 0.0000 | |
360 | N | A | 0.0000 | |
361 | I | A | 0.0000 | |
362 | L | A | 0.9125 | |
363 | A | A | 0.0000 | |
364 | E | A | 0.0000 | |
365 | L | A | 0.9031 | |
366 | L | A | 0.9795 | |
367 | C | A | 0.1362 | |
368 | F | A | 0.0000 | |
369 | G | A | 0.0000 | |
370 | D | A | 0.0000 | |
371 | R | A | 0.0000 | |
372 | E | A | -1.1033 | |
373 | F | A | 0.0000 | |
374 | Y | A | 0.0000 | |
375 | K | A | -1.2417 | |
376 | D | A | -1.1581 | |
377 | W | A | 0.0000 | |
378 | W | A | -0.6260 | |
379 | N | A | -1.3256 | |
380 | A | A | 0.0000 | |
381 | K | A | -1.3790 | |
382 | S | A | 0.0000 | |
383 | V | A | 0.0000 | |
384 | G | A | -0.2251 | |
385 | D | A | -1.0592 | |
386 | Y | A | -0.5885 | |
387 | W | A | -0.0766 | |
388 | R | A | -0.7043 | |
389 | M | A | -0.7150 | |
390 | W | A | -0.2615 | |
391 | N | A | -0.3173 | |
392 | M | A | 0.0000 | |
393 | P | A | -0.1235 | |
394 | V | A | 0.2115 | |
395 | H | A | -0.1566 | |
396 | K | A | -0.2297 | |
397 | W | A | 0.0000 | |
398 | M | A | 0.0000 | |
399 | V | A | 0.4527 | |
400 | R | A | 0.0000 | |
401 | H | A | 0.0000 | |
402 | V | A | 0.6537 | |
403 | Y | A | 0.6358 | |
404 | F | A | 0.1432 | |
405 | P | A | -0.4409 | |
406 | C | A | 0.0000 | |
407 | L | A | -0.8117 | |
408 | R | A | -1.1001 | |
409 | R | A | -2.3614 | |
410 | N | A | -2.0651 | |
411 | I | A | -0.7107 | |
412 | P | A | -0.7003 | |
413 | K | A | -0.5824 | |
414 | V | A | 1.3672 | |
415 | P | A | 0.9331 | |
416 | A | A | 0.0000 | |
417 | I | A | 1.3863 | |
418 | I | A | 1.6315 | |
419 | L | A | 1.5212 | |
420 | A | A | 0.0000 | |
421 | F | A | 0.0000 | |
422 | L | A | 1.7729 | |
423 | V | A | 1.4327 | |
424 | S | A | 0.0000 | |
425 | A | A | 0.0000 | |
426 | V | A | 2.2120 | |
427 | F | A | 1.2543 | |
428 | H | A | 0.7282 | |
429 | E | A | 0.0000 | |
430 | L | A | 1.2117 | |
431 | C | A | 0.8915 | |
432 | I | A | 0.9719 | |
433 | A | A | 0.0000 | |
434 | V | A | 0.0000 | |
435 | P | A | 0.3044 | |
436 | C | A | 0.0000 | |
437 | R | A | -0.1797 | |
438 | L | A | 0.7219 | |
439 | F | A | 1.8544 | |
440 | K | A | 0.7001 | |
441 | L | A | 1.7298 | |
442 | W | A | 1.1169 | |
443 | A | A | 0.0000 | |
444 | F | A | 1.9863 | |
445 | L | A | 1.9206 | |
446 | G | A | 1.4825 | |
447 | I | A | 0.0000 | |
448 | M | A | 1.7692 | |
449 | F | A | 2.1983 | |
450 | Q | A | 1.3589 | |
451 | V | A | 0.0000 | |
452 | P | A | 1.4314 | |
453 | L | A | 1.7729 | |
454 | V | A | 1.7110 | |
455 | F | A | 2.5024 | |
456 | I | A | 2.4659 | |
457 | T | A | 0.0000 | |
458 | N | A | 0.0806 | |
459 | Y | A | 1.2049 | |
460 | L | A | 0.6353 | |
461 | Q | A | -0.5317 | |
462 | E | A | -1.8458 | |
463 | R | A | -1.5573 | |
464 | F | A | 0.8585 | |
465 | G | A | -0.1550 | |
466 | S | A | -0.3935 | |
467 | M | A | 1.1520 | |
468 | V | A | 0.9393 | |
469 | G | A | 0.0000 | |
470 | N | A | 0.2092 | |
471 | M | A | 1.4972 | |
472 | I | A | 1.3883 | |
473 | F | A | 0.0000 | |
474 | W | A | 1.4561 | |
475 | F | A | 2.1044 | |
476 | T | A | 1.6547 | |
477 | F | A | 0.0000 | |
478 | C | A | 1.6891 | |
479 | I | A | 1.9496 | |
480 | F | A | 2.4342 | |
481 | G | A | 0.0000 | |
482 | Q | A | 0.6634 | |
483 | P | A | 0.5735 | |
484 | M | A | 0.0000 | |
485 | C | A | 0.9351 | |
486 | V | A | 0.5375 | |
487 | L | A | 0.0000 | |
488 | L | A | 0.5651 | |
489 | Y | A | 0.0000 | |
490 | Y | A | 0.2860 | |
491 | H | A | 0.0000 | |
492 | D | A | -0.6999 | |
493 | L | A | 0.0000 | |
494 | M | A | -1.3815 | |
495 | N | A | -2.0680 | |
496 | R | A | -1.8501 | |
497 | K | A | -2.1582 | |
498 | G | A | -2.0311 | |
499 | K | A | -2.0874 | |
500 | M | A | -0.5875 | |
501 | S | A | -0.7429 |
Calculations for various pH values
This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is partially or entirely disordered. Average score is recommended for pH analysis.
pH |
Average A4D Score |
Max A4D Score |
|||
4.0 | 0.3557 | 6.0319 | View | CSV | PDB |
4.5 | 0.3053 | 5.9995 | View | CSV | PDB |
5.0 | 0.2444 | 5.9583 | View | CSV | PDB |
5.5 | 0.1834 | 5.9153 | View | CSV | PDB |
6.0 | 0.1334 | 5.9291 | View | CSV | PDB |
6.5 | 0.1014 | 5.9955 | View | CSV | PDB |
7.0 | 0.0878 | 6.0696 | View | CSV | PDB |
7.5 | 0.0879 | 6.1465 | View | CSV | PDB |
8.0 | 0.0969 | 6.2241 | View | CSV | PDB |
8.5 | 0.1137 | 6.3012 | View | CSV | PDB |
9.0 | 0.1402 | 6.3762 | View | CSV | PDB |