| Chain sequence(s) |
A: MKYFSRMTKETSNPEKNNIVLMGRKTWDSIPAKFRPLPNRVNVVLSSQAKSDSNKFTGSIACDTFDSAIQEALQREGKVETVWVIGGYSIYKAALESEYIHRLYITRVLREYDCDTFFPEFDHHKFKKLVDPSVPSELQEEDGVQYR
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | No |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:02)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:02)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:02)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:02)
[INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:03)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:00:03)
[INFO] Main: Simulation completed successfully. (00:00:05)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 1 | M | A | 0.4332 | |
| 2 | K | A | -1.0478 | |
| 3 | Y | A | -0.0681 | |
| 4 | F | A | 0.3452 | |
| 5 | S | A | -0.8445 | |
| 6 | R | A | -1.4303 | |
| 7 | M | A | 0.0000 | |
| 8 | T | A | 0.0000 | |
| 9 | K | A | -2.0384 | |
| 10 | E | A | -2.8775 | |
| 11 | T | A | -2.1594 | |
| 12 | S | A | -1.4446 | |
| 13 | N | A | -2.1178 | |
| 14 | P | A | -2.2344 | |
| 15 | E | A | -2.9942 | |
| 16 | K | A | -3.3259 | |
| 17 | N | A | -2.8002 | |
| 18 | N | A | 0.0000 | |
| 19 | I | A | 0.0000 | |
| 20 | V | A | 0.0000 | |
| 21 | L | A | 0.0000 | |
| 22 | M | A | 0.0000 | |
| 23 | G | A | 0.0000 | |
| 24 | R | A | -2.4954 | |
| 25 | K | A | -2.6031 | |
| 26 | T | A | -1.4860 | |
| 27 | W | A | 0.0000 | |
| 28 | D | A | -2.5900 | |
| 29 | S | A | -1.4620 | |
| 30 | I | A | -0.5372 | |
| 31 | P | A | -0.4732 | |
| 32 | A | A | -0.6157 | |
| 33 | K | A | -0.9174 | |
| 34 | F | A | 0.8664 | |
| 35 | R | A | -0.3819 | |
| 36 | P | A | -0.3619 | |
| 37 | L | A | -0.1382 | |
| 38 | P | A | -0.6169 | |
| 39 | N | A | -1.8436 | |
| 40 | R | A | 0.0000 | |
| 41 | V | A | -0.0595 | |
| 42 | N | A | 0.0000 | |
| 43 | V | A | 0.0000 | |
| 44 | V | A | 0.0000 | |
| 45 | L | A | 0.0000 | |
| 46 | S | A | 0.0000 | |
| 47 | S | A | -1.6691 | |
| 48 | Q | A | -2.3139 | |
| 49 | A | A | 0.0000 | |
| 50 | K | A | -2.6444 | |
| 51 | S | A | -1.9364 | |
| 52 | D | A | 0.0000 | |
| 53 | S | A | -2.1349 | |
| 54 | N | A | -2.5141 | |
| 55 | K | A | -2.7341 | |
| 56 | F | A | 0.0000 | |
| 57 | T | A | -1.2619 | |
| 58 | G | A | -0.8736 | |
| 59 | S | A | -0.4306 | |
| 60 | I | A | 0.3067 | |
| 61 | A | A | -1.1849 | |
| 62 | C | A | 0.0000 | |
| 63 | D | A | -2.0772 | |
| 64 | T | A | -1.2454 | |
| 65 | F | A | -1.1080 | |
| 66 | D | A | -2.1957 | |
| 67 | S | A | -1.4539 | |
| 68 | A | A | 0.0000 | |
| 69 | I | A | 0.0000 | |
| 70 | Q | A | -1.7645 | |
| 71 | E | A | -1.3325 | |
| 72 | A | A | 0.0000 | |
| 73 | L | A | -0.8851 | |
| 74 | Q | A | -2.0643 | |
| 75 | R | A | -2.5693 | |
| 76 | E | A | -3.0237 | |
| 77 | G | A | -2.7615 | |
| 78 | K | A | -3.5896 | |
| 79 | V | A | -2.3302 | |
| 80 | E | A | -2.2310 | |
| 81 | T | A | -0.5868 | |
| 82 | V | A | 0.8158 | |
| 83 | W | A | 0.5011 | |
| 84 | V | A | 0.8919 | |
| 85 | I | A | 0.7321 | |
| 86 | G | A | 0.0000 | |
| 87 | G | A | 0.2490 | |
| 88 | Y | A | 1.2165 | |
| 89 | S | A | 0.1774 | |
| 90 | I | A | 0.0000 | |
| 91 | Y | A | 0.1441 | |
| 92 | K | A | -1.0061 | |
| 93 | A | A | -1.0413 | |
| 94 | A | A | 0.0000 | |
| 95 | L | A | -1.4238 | |
| 96 | E | A | -2.0305 | |
| 97 | S | A | -1.6275 | |
| 98 | E | A | -1.6957 | |
| 99 | Y | A | -0.2029 | |
| 100 | I | A | -0.4673 | |
| 101 | H | A | -1.2574 | |
| 102 | R | A | -1.3493 | |
| 103 | L | A | 0.1953 | |
| 104 | Y | A | 1.1025 | |
| 105 | I | A | 1.1860 | |
| 106 | T | A | 0.1387 | |
| 107 | R | A | -1.1747 | |
| 108 | V | A | -0.2290 | |
| 109 | L | A | -0.3388 | |
| 110 | R | A | -1.7539 | |
| 111 | E | A | -1.9274 | |
| 112 | Y | A | -0.6126 | |
| 113 | D | A | -1.5779 | |
| 114 | C | A | -0.4741 | |
| 115 | D | A | -1.2892 | |
| 116 | T | A | 0.4343 | |
| 117 | F | A | 2.1469 | |
| 118 | F | A | 1.7958 | |
| 119 | P | A | 0.0000 | |
| 120 | E | A | -1.5713 | |
| 121 | F | A | -1.8977 | |
| 122 | D | A | -2.5517 | |
| 123 | H | A | -3.0255 | |
| 124 | H | A | -2.9349 | |
| 125 | K | A | -2.8780 | |
| 126 | F | A | -2.4107 | |
| 127 | K | A | -2.5168 | |
| 128 | K | A | -1.6258 | |
| 129 | L | A | 1.0024 | |
| 130 | V | A | 1.7924 | |
| 131 | D | A | 0.7343 | |
| 132 | P | A | 0.2624 | |
| 133 | S | A | 0.0822 | |
| 134 | V | A | 0.3085 | |
| 135 | P | A | -0.6042 | |
| 136 | S | A | -0.9673 | |
| 137 | E | A | -1.9445 | |
| 138 | L | A | -1.0129 | |
| 139 | Q | A | -1.9596 | |
| 140 | E | A | -3.2857 | |
| 141 | E | A | -3.5737 | |
| 142 | D | A | -3.2043 | |
| 143 | G | A | -2.3448 | |
| 144 | V | A | -1.8067 | |
| 145 | Q | A | -1.9456 | |
| 146 | Y | A | -1.5900 | |
| 147 | R | A | -2.0758 |