Chain sequence(s) |
A: MSSFSYEPYYSTSYKRRYVETPRVHISSVRSGYSTARSAYSSYSAPVSSSLSVRRSYSSSSGSLMPSLENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQKHSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDAEGRLMEARKGADEAALARAELEKRIDSLMDEISFLKKVHEEEIAELQAQIQYAQISVEMDVTKPDLSAALKDIRAQYEKLAAKNMQNAEEWFKSRFTVLTESAAKNTDAVRAAKDEVSESRRLLKAKTLEIEACRGMNEALEKQLQELEDKQNADISAMQDTINKLENELRTTKSEMARYLKEYQDLLNVKMALDIEIAAYRKLLEGEETRLSFTSVGSITSGYSQSSQVFGRSAYGGLQTSSYLMSTRSFPSYYTSHVQEEQIEVEETIEAAKAEEAKDEPPSEGEAEEEEKDKEEAEEEEAAEEEEAAKEESEEAKEEEEGGEGEEGEETKEAEEEEKKVEGAGEEQAAKKKD
input PDB |
Selected Chain(s) | A |
Distance of aggregation | 10 Å |
FoldX usage | Yes |
pH calculations | Yes |
alphaCutter usage | No |
Dynamic mode | No |
Automated mutations | No |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:01) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01) [INFO] runJob: Creating pdb object from: input.pdb (00:00:01) [INFO] PDB-Info: The input structure is partially or entirely disordered. Average score is recommended for pH analysis. (00:00:02) [INFO] FoldX: Starting FoldX energy minimization (00:00:03) [INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:13:23) [INFO] agg3D: Running pKa-ANI on /STORAGE/DATA/lcbio/aggreskan/4a38df316d7a62b/tmp/folded.pdb (00:13:23) [INFO] Main: Simulation completed successfully. (00:17:53) |
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
1 | M | A | 1.1174 | |
2 | S | A | 0.6726 | |
3 | S | A | 1.0015 | |
4 | F | A | 1.9315 | |
5 | S | A | 0.7891 | |
6 | Y | A | 0.8986 | |
7 | E | A | -0.6756 | |
8 | P | A | 0.1164 | |
9 | Y | A | 1.4729 | |
10 | Y | A | 1.5376 | |
11 | S | A | 0.7647 | |
12 | T | A | 0.3336 | |
13 | S | A | -0.1279 | |
14 | Y | A | -0.2749 | |
15 | K | A | -2.4537 | |
16 | R | A | -2.9385 | |
17 | R | A | -1.9506 | |
18 | Y | A | 0.4252 | |
19 | V | A | 1.0810 | |
20 | E | A | -0.7395 | |
21 | T | A | -0.8675 | |
22 | P | A | -1.1575 | |
23 | R | A | -1.1570 | |
24 | V | A | 0.8176 | |
25 | H | A | 0.3353 | |
26 | I | A | 1.8074 | |
27 | S | A | 0.6565 | |
28 | S | A | 0.4334 | |
29 | V | A | 0.8828 | |
30 | R | A | -1.2656 | |
31 | S | A | -0.6590 | |
32 | G | A | -0.4209 | |
33 | Y | A | 0.9251 | |
34 | S | A | 0.1037 | |
35 | T | A | -0.3588 | |
36 | A | A | -0.8299 | |
37 | R | A | -1.8030 | |
38 | S | A | -0.7636 | |
39 | A | A | 0.0660 | |
40 | Y | A | 1.0831 | |
41 | S | A | 0.6036 | |
42 | S | A | 0.6103 | |
43 | Y | A | 1.1900 | |
44 | S | A | 0.5348 | |
45 | A | A | 0.5386 | |
46 | P | A | 0.6596 | |
47 | V | A | 1.4644 | |
48 | S | A | 0.6131 | |
49 | S | A | 0.2924 | |
50 | S | A | 0.7120 | |
51 | L | A | 1.5091 | |
52 | S | A | 0.6002 | |
53 | V | A | 0.6941 | |
54 | R | A | -1.6723 | |
55 | R | A | -2.1405 | |
56 | S | A | -0.8120 | |
57 | Y | A | 0.3489 | |
58 | S | A | -0.0309 | |
59 | S | A | -0.1930 | |
60 | S | A | -0.4632 | |
61 | S | A | -0.6746 | |
62 | G | A | -0.3204 | |
63 | S | A | 0.4155 | |
64 | L | A | 1.8048 | |
65 | M | A | 1.7497 | |
66 | P | A | 0.7546 | |
67 | S | A | -0.0036 | |
68 | L | A | 0.5459 | |
69 | E | A | -1.7325 | |
70 | N | A | -1.5721 | |
71 | L | A | -0.3422 | |
72 | D | A | -1.3175 | |
73 | L | A | 0.6877 | |
74 | S | A | 0.0145 | |
75 | Q | A | -0.3350 | |
76 | V | A | 0.2844 | |
77 | A | A | -0.1371 | |
78 | A | A | -0.4538 | |
79 | I | A | 0.0180 | |
80 | S | A | -0.8531 | |
81 | N | A | -2.1837 | |
82 | D | A | -1.9234 | |
83 | L | A | -1.0415 | |
84 | K | A | -2.6699 | |
85 | S | A | -1.9647 | |
86 | I | A | -1.0041 | |
87 | R | A | -3.1267 | |
88 | T | A | -2.5827 | |
89 | Q | A | -2.8510 | |
90 | E | A | -3.6758 | |
91 | K | A | -3.4566 | |
92 | A | A | -2.7023 | |
93 | Q | A | -3.1278 | |
94 | L | A | -2.3232 | |
95 | Q | A | -3.1497 | |
96 | D | A | -2.8202 | |
97 | L | A | -1.6014 | |
98 | N | A | -2.1125 | |
99 | D | A | -2.7067 | |
100 | R | A | -1.8179 | |
101 | F | A | 0.4366 | |
102 | A | A | -0.3792 | |
103 | S | A | -0.6668 | |
104 | F | A | 0.7805 | |
105 | I | A | 0.3977 | |
106 | E | A | -2.2403 | |
107 | R | A | -2.3516 | |
108 | V | A | -1.5851 | |
109 | H | A | -3.2636 | |
110 | E | A | -4.1407 | |
111 | L | A | -2.8874 | |
112 | E | A | -3.9314 | |
113 | Q | A | -3.8520 | |
114 | Q | A | -2.9498 | |
115 | N | A | -3.3295 | |
116 | K | A | -3.1252 | |
117 | V | A | -0.4631 | |
118 | L | A | -0.4215 | |
119 | E | A | -1.4957 | |
120 | A | A | -0.3355 | |
121 | E | A | -0.6130 | |
122 | L | A | 0.0995 | |
123 | L | A | 0.8017 | |
124 | V | A | 0.5511 | |
125 | L | A | -0.8039 | |
126 | R | A | -2.2760 | |
127 | Q | A | -2.3829 | |
128 | K | A | -2.7788 | |
129 | H | A | -3.0910 | |
130 | S | A | -2.7272 | |
131 | E | A | -2.9734 | |
132 | P | A | -1.6523 | |
133 | S | A | -1.4745 | |
134 | R | A | -1.8689 | |
135 | F | A | 0.1401 | |
136 | R | A | -1.7461 | |
137 | A | A | -1.1799 | |
138 | L | A | -0.0322 | |
139 | Y | A | -0.4664 | |
140 | E | A | -2.4550 | |
141 | Q | A | -2.5360 | |
142 | E | A | -2.3295 | |
143 | I | A | -1.6365 | |
144 | R | A | -2.9436 | |
145 | D | A | -2.1377 | |
146 | L | A | -1.0442 | |
147 | R | A | -2.5548 | |
148 | L | A | -1.6380 | |
149 | A | A | -1.3710 | |
150 | A | A | -2.0774 | |
151 | E | A | -3.5304 | |
152 | D | A | -3.8544 | |
153 | A | A | -3.1777 | |
154 | T | A | -3.2264 | |
155 | N | A | -4.2016 | |
156 | E | A | -4.3144 | |
157 | K | A | -4.2250 | |
158 | Q | A | -3.7991 | |
159 | A | A | -2.9521 | |
160 | L | A | -2.7500 | |
161 | Q | A | -3.4235 | |
162 | G | A | -3.2618 | |
163 | E | A | -3.7657 | |
164 | R | A | -3.9820 | |
165 | E | A | -3.9664 | |
166 | G | A | -2.8385 | |
167 | L | A | -1.7791 | |
168 | E | A | -3.3345 | |
169 | E | A | -3.5916 | |
170 | T | A | -1.5444 | |
171 | L | A | -0.9221 | |
172 | R | A | -2.7499 | |
173 | N | A | -2.3516 | |
174 | L | A | -1.4037 | |
175 | Q | A | -2.4837 | |
176 | A | A | -2.4243 | |
177 | R | A | -2.7291 | |
178 | Y | A | -1.3150 | |
179 | E | A | -2.5077 | |
180 | E | A | -3.0181 | |
181 | E | A | -2.5894 | |
182 | V | A | -0.6419 | |
183 | L | A | -1.0345 | |
184 | S | A | -2.2469 | |
185 | R | A | -3.7490 | |
186 | E | A | -3.7907 | |
187 | D | A | -3.6363 | |
188 | A | A | -3.0391 | |
189 | E | A | -3.7299 | |
190 | G | A | -3.4526 | |
191 | R | A | -3.7089 | |
192 | L | A | -1.8620 | |
193 | M | A | -2.1525 | |
194 | E | A | -3.5377 | |
195 | A | A | -2.8634 | |
196 | R | A | -3.7935 | |
197 | K | A | -4.3031 | |
198 | G | A | -2.9630 | |
199 | A | A | -2.6727 | |
200 | D | A | -3.7468 | |
201 | E | A | -3.1635 | |
202 | A | A | -2.0949 | |
203 | A | A | -1.3745 | |
204 | L | A | -0.5773 | |
205 | A | A | -1.4669 | |
206 | R | A | -2.7291 | |
207 | A | A | -2.1045 | |
208 | E | A | -2.8871 | |
209 | L | A | -1.7764 | |
210 | E | A | -3.4092 | |
211 | K | A | -3.9743 | |
212 | R | A | -3.3328 | |
213 | I | A | -1.6030 | |
214 | D | A | -3.0118 | |
215 | S | A | -2.1648 | |
216 | L | A | -0.8829 | |
217 | M | A | -0.3142 | |
218 | D | A | -1.6631 | |
219 | E | A | -1.0115 | |
220 | I | A | 0.3428 | |
221 | S | A | -0.0802 | |
222 | F | A | 0.6937 | |
223 | L | A | -0.3886 | |
224 | K | A | -2.7393 | |
225 | K | A | -2.8130 | |
226 | V | A | -1.7465 | |
227 | H | A | -3.0932 | |
228 | E | A | -3.8630 | |
229 | E | A | -3.9551 | |
230 | E | A | -3.1279 | |
231 | I | A | -0.7946 | |
232 | A | A | -1.4707 | |
233 | E | A | -2.3572 | |
234 | L | A | -0.0570 | |
235 | Q | A | -0.4173 | |
236 | A | A | -0.5333 | |
237 | Q | A | -0.2194 | |
238 | I | A | 0.7980 | |
239 | Q | A | 0.1307 | |
240 | Y | A | 1.4504 | |
241 | A | A | 0.8098 | |
242 | Q | A | 0.1900 | |
243 | I | A | 1.6415 | |
244 | S | A | 1.2368 | |
245 | V | A | 1.2131 | |
246 | E | A | -0.5690 | |
247 | M | A | 0.4178 | |
248 | D | A | -0.9268 | |
249 | V | A | 0.4194 | |
250 | T | A | -0.6195 | |
251 | K | A | -1.8057 | |
252 | P | A | -1.2099 | |
253 | D | A | -1.6895 | |
254 | L | A | -0.2562 | |
255 | S | A | -0.5357 | |
256 | A | A | -1.1780 | |
257 | A | A | -0.9242 | |
258 | L | A | -0.9099 | |
259 | K | A | -2.3734 | |
260 | D | A | -2.5507 | |
261 | I | A | -1.3463 | |
262 | R | A | -2.8000 | |
263 | A | A | -2.4968 | |
264 | Q | A | -1.9910 | |
265 | Y | A | -1.0813 | |
266 | E | A | -2.7870 | |
267 | K | A | -2.5095 | |
268 | L | A | -1.0818 | |
269 | A | A | -1.2523 | |
270 | A | A | -1.7930 | |
271 | K | A | -2.8985 | |
272 | N | A | -2.8561 | |
273 | M | A | -1.6298 | |
274 | Q | A | -2.9347 | |
275 | N | A | -3.2933 | |
276 | A | A | -2.1280 | |
277 | E | A | -3.3132 | |
278 | E | A | -3.1122 | |
279 | W | A | -0.8386 | |
280 | F | A | -0.1202 | |
281 | K | A | -1.3028 | |
282 | S | A | -0.1542 | |
283 | R | A | 0.3454 | |
284 | F | A | 1.8729 | |
285 | T | A | 1.1253 | |
286 | V | A | 1.9255 | |
287 | L | A | 1.7686 | |
288 | T | A | 0.3241 | |
289 | E | A | -1.2695 | |
290 | S | A | -0.8294 | |
291 | A | A | -1.1025 | |
292 | A | A | -1.6760 | |
293 | K | A | -3.1223 | |
294 | N | A | -2.6128 | |
295 | T | A | -1.9141 | |
296 | D | A | -2.7044 | |
297 | A | A | -1.6880 | |
298 | V | A | -0.9782 | |
299 | R | A | -2.9443 | |
300 | A | A | -2.2065 | |
301 | A | A | -1.8769 | |
302 | K | A | -3.1349 | |
303 | D | A | -3.8251 | |
304 | E | A | -3.5762 | |
305 | V | A | -2.0036 | |
306 | S | A | -2.6893 | |
307 | E | A | -3.3443 | |
308 | S | A | -2.2341 | |
309 | R | A | -3.1433 | |
310 | R | A | -3.2085 | |
311 | L | A | -1.0517 | |
312 | L | A | -0.8989 | |
313 | K | A | -2.1937 | |
314 | A | A | -1.5189 | |
315 | K | A | -1.8227 | |
316 | T | A | -0.8385 | |
317 | L | A | -0.4694 | |
318 | E | A | -1.7739 | |
319 | I | A | -0.5530 | |
320 | E | A | -1.9168 | |
321 | A | A | -1.2942 | |
322 | C | A | -0.9577 | |
323 | R | A | -2.5577 | |
324 | G | A | -2.0456 | |
325 | M | A | -0.9737 | |
326 | N | A | -2.9607 | |
327 | E | A | -3.3974 | |
328 | A | A | -2.1267 | |
329 | L | A | -1.9516 | |
330 | E | A | -3.3947 | |
331 | K | A | -3.8056 | |
332 | Q | A | -2.9117 | |
333 | L | A | -1.9757 | |
334 | Q | A | -3.7885 | |
335 | E | A | -4.2591 | |
336 | L | A | -2.7729 | |
337 | E | A | -4.4944 | |
338 | D | A | -4.8059 | |
339 | K | A | -4.3800 | |
340 | Q | A | -3.9558 | |
341 | N | A | -3.4144 | |
342 | A | A | -2.5218 | |
343 | D | A | -2.8567 | |
344 | I | A | -0.7522 | |
345 | S | A | -1.1356 | |
346 | A | A | -1.0690 | |
347 | M | A | -0.5278 | |
348 | Q | A | -1.5131 | |
349 | D | A | -2.6659 | |
350 | T | A | -1.3815 | |
351 | I | A | -1.3477 | |
352 | N | A | -3.0144 | |
353 | K | A | -3.3046 | |
354 | L | A | -1.8224 | |
355 | E | A | -3.1107 | |
356 | N | A | -3.3314 | |
357 | E | A | -3.3660 | |
358 | L | A | -2.7330 | |
359 | R | A | -3.5794 | |
360 | T | A | -2.4774 | |
361 | T | A | -2.3372 | |
362 | K | A | -2.7782 | |
363 | S | A | -1.8365 | |
364 | E | A | -1.4862 | |
365 | M | A | -0.5741 | |
366 | A | A | -0.5507 | |
367 | R | A | -1.1485 | |
368 | Y | A | -0.0242 | |
369 | L | A | 0.6143 | |
370 | K | A | -1.6465 | |
371 | E | A | -1.2243 | |
372 | Y | A | 0.5231 | |
373 | Q | A | -1.2142 | |
374 | D | A | -1.6218 | |
375 | L | A | 0.3491 | |
376 | L | A | 0.1226 | |
377 | N | A | -0.3958 | |
378 | V | A | 1.2492 | |
379 | K | A | -0.5209 | |
380 | M | A | 0.3565 | |
381 | A | A | 0.9087 | |
382 | L | A | 0.9659 | |
383 | D | A | -0.2478 | |
384 | I | A | 1.1856 | |
385 | E | A | -0.5475 | |
386 | I | A | 0.4829 | |
387 | A | A | -0.0761 | |
388 | A | A | -0.0759 | |
389 | Y | A | 0.3039 | |
390 | R | A | -1.7512 | |
391 | K | A | -2.2963 | |
392 | L | A | -0.1827 | |
393 | L | A | -1.5855 | |
394 | E | A | -3.2383 | |
395 | G | A | -2.3911 | |
396 | E | A | -2.9588 | |
397 | E | A | -2.9658 | |
398 | T | A | -1.9383 | |
399 | R | A | -2.0540 | |
400 | L | A | -0.2865 | |
401 | S | A | 0.2489 | |
402 | F | A | 1.4833 | |
403 | T | A | 0.9440 | |
404 | S | A | 0.8318 | |
405 | V | A | 2.1434 | |
406 | G | A | 0.7188 | |
407 | S | A | 0.9123 | |
408 | I | A | 1.9066 | |
409 | T | A | 0.7237 | |
410 | S | A | 0.2044 | |
411 | G | A | -0.1291 | |
412 | Y | A | 0.5793 | |
413 | S | A | -0.3808 | |
414 | Q | A | -1.3103 | |
415 | S | A | -0.9341 | |
416 | S | A | -0.6080 | |
417 | Q | A | -0.2246 | |
418 | V | A | 1.7760 | |
419 | F | A | 1.8223 | |
420 | G | A | -0.2162 | |
421 | R | A | -1.3593 | |
422 | S | A | -0.7097 | |
423 | A | A | -0.1692 | |
424 | Y | A | 0.9087 | |
425 | G | A | 0.1452 | |
426 | G | A | 0.0852 | |
427 | L | A | 0.7428 | |
428 | Q | A | -0.7389 | |
429 | T | A | -0.3031 | |
430 | S | A | 0.0305 | |
431 | S | A | 0.7097 | |
432 | Y | A | 2.1316 | |
433 | L | A | 2.5614 | |
434 | M | A | 1.7405 | |
435 | S | A | 0.3210 | |
436 | T | A | -0.3946 | |
437 | R | A | -1.4712 | |
438 | S | A | -0.2989 | |
439 | F | A | 1.3753 | |
440 | P | A | 0.8386 | |
441 | S | A | 1.0947 | |
442 | Y | A | 1.9826 | |
443 | Y | A | 1.6433 | |
444 | T | A | 0.7246 | |
445 | S | A | 0.1269 | |
446 | H | A | -0.6770 | |
447 | V | A | -0.1051 | |
448 | Q | A | -2.2109 | |
449 | E | A | -2.9818 | |
450 | E | A | -3.0832 | |
451 | Q | A | -2.0301 | |
452 | I | A | 0.0186 | |
453 | E | A | -1.2730 | |
454 | V | A | -0.0281 | |
455 | E | A | -1.8694 | |
456 | E | A | -2.2517 | |
457 | T | A | -0.5560 | |
458 | I | A | 0.3801 | |
459 | E | A | -1.3680 | |
460 | A | A | -0.6908 | |
461 | A | A | -1.2128 | |
462 | K | A | -2.5800 | |
463 | A | A | -2.2186 | |
464 | E | A | -3.2516 | |
465 | E | A | -3.2905 | |
466 | A | A | -2.7384 | |
467 | K | A | -3.5793 | |
468 | D | A | -3.5816 | |
469 | E | A | -3.2475 | |
470 | P | A | -1.6933 | |
471 | P | A | -1.3638 | |
472 | S | A | -1.5692 | |
473 | E | A | -2.5910 | |
474 | G | A | -2.5213 | |
475 | E | A | -3.1056 | |
476 | A | A | -2.8203 | |
477 | E | A | -4.1739 | |
478 | E | A | -4.9190 | |
479 | E | A | -5.3154 | |
480 | E | A | -5.9174 | |
481 | K | A | -6.0032 | |
482 | D | A | -6.0126 | |
483 | K | A | -6.1179 | |
484 | E | A | -6.1824 | |
485 | E | A | -6.1636 | |
486 | A | A | -5.1480 | |
487 | E | A | -5.6434 | |
488 | E | A | -5.6126 | |
489 | E | A | -5.4687 | |
490 | E | A | -5.3845 | |
491 | A | A | -4.3586 | |
492 | A | A | -4.3647 | |
493 | E | A | -5.2775 | |
494 | E | A | -4.9822 | |
495 | E | A | -4.9234 | |
496 | E | A | -5.0268 | |
497 | A | A | -4.0414 | |
498 | A | A | -3.9940 | |
499 | K | A | -5.1322 | |
500 | E | A | -5.3312 | |
501 | E | A | -4.8236 | |
502 | S | A | -4.3371 | |
503 | E | A | -5.4925 | |
504 | E | A | -5.7936 | |
505 | A | A | -4.8500 | |
506 | K | A | -5.6003 | |
507 | E | A | -5.7702 | |
508 | E | A | -5.4961 | |
509 | E | A | -5.3403 | |
510 | E | A | -4.9728 | |
511 | G | A | -4.1471 | |
512 | G | A | -3.6489 | |
513 | E | A | -3.8679 | |
514 | G | A | -3.1899 | |
515 | E | A | -4.1611 | |
516 | E | A | -4.1966 | |
517 | G | A | -3.7881 | |
518 | E | A | -4.4993 | |
519 | E | A | -4.5804 | |
520 | T | A | -3.7227 | |
521 | K | A | -4.7537 | |
522 | E | A | -5.0127 | |
523 | A | A | -4.1993 | |
524 | E | A | -5.4542 | |
525 | E | A | -5.2890 | |
526 | E | A | -5.4219 | |
527 | E | A | -5.1367 | |
528 | K | A | -4.9157 | |
529 | K | A | -4.1066 | |
530 | V | A | -2.0171 | |
531 | E | A | -3.5237 | |
532 | G | A | -3.0476 | |
533 | A | A | -2.2886 | |
534 | G | A | -2.6862 | |
535 | E | A | -3.6617 | |
536 | E | A | -3.9938 | |
537 | Q | A | -3.7346 | |
538 | A | A | -3.0277 | |
539 | A | A | -3.3723 | |
540 | K | A | -4.3604 | |
541 | K | A | -4.2207 | |
542 | K | A | -3.9785 | |
543 | D | A | -3.4741 |
This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is partially or entirely disordered. Average score is recommended for pH analysis.
pH |
Average A4D Score |
Max A4D Score |
|||
4.0 | -1.2634 | 3.8149 | View | CSV | PDB |
4.5 | -1.4764 | 3.7503 | View | CSV | PDB |
5.0 | -1.7699 | 3.6647 | View | CSV | PDB |
5.5 | -2.0916 | 3.5891 | View | CSV | PDB |
6.0 | -2.3808 | 3.5607 | View | CSV | PDB |
6.5 | -2.5862 | 3.6015 | View | CSV | PDB |
7.0 | -2.6836 | 3.7069 | View | CSV | PDB |
7.5 | -2.6912 | 3.8548 | View | CSV | PDB |
8.0 | -2.6477 | 4.0226 | View | CSV | PDB |
8.5 | -2.5778 | 4.197 | View | CSV | PDB |
9.0 | -2.4894 | 4.3716 | View | CSV | PDB |