Project name: 4a38df316d7a62b

Status: done

Started: 2025-04-01 13:04:27
Chain sequence(s) A: MSSFSYEPYYSTSYKRRYVETPRVHISSVRSGYSTARSAYSSYSAPVSSSLSVRRSYSSSSGSLMPSLENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQKHSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDAEGRLMEARKGADEAALARAELEKRIDSLMDEISFLKKVHEEEIAELQAQIQYAQISVEMDVTKPDLSAALKDIRAQYEKLAAKNMQNAEEWFKSRFTVLTESAAKNTDAVRAAKDEVSESRRLLKAKTLEIEACRGMNEALEKQLQELEDKQNADISAMQDTINKLENELRTTKSEMARYLKEYQDLLNVKMALDIEIAAYRKLLEGEETRLSFTSVGSITSGYSQSSQVFGRSAYGGLQTSSYLMSTRSFPSYYTSHVQEEQIEVEETIEAAKAEEAKDEPPSEGEAEEEEKDKEEAEEEEAAEEEEAAKEESEEAKEEEEGGEGEEGEETKEAEEEEKKVEGAGEEQAAKKKD
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
alphaCutter usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:03)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:13:23)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/4a38df316d7a62b/tmp/folded.pdb                (00:13:23)
[INFO]       Main:     Simulation completed successfully.                                          (00:17:53)
Show buried residues

Aggrescan4D profile | 4a38df316d7a62b | Chain AM1L51F101E151E201K251A301I351S401Q451E501-4-2024ResidueScore
Minimal score value
-6.1824
Maximal score value
2.5614
Average score
-1.7242
Total score value
-936.2215

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

Show chain Show residues from to
residue index residue name chain Aggrescan4D score mutation
residue index
residue name
chain
Aggrescan4D score
mutation
1 M A 1.1174
2 S A 0.6726
3 S A 1.0015
4 F A 1.9315
5 S A 0.7891
6 Y A 0.8986
7 E A -0.6756
8 P A 0.1164
9 Y A 1.4729
10 Y A 1.5376
11 S A 0.7647
12 T A 0.3336
13 S A -0.1279
14 Y A -0.2749
15 K A -2.4537
16 R A -2.9385
17 R A -1.9506
18 Y A 0.4252
19 V A 1.0810
20 E A -0.7395
21 T A -0.8675
22 P A -1.1575
23 R A -1.1570
24 V A 0.8176
25 H A 0.3353
26 I A 1.8074
27 S A 0.6565
28 S A 0.4334
29 V A 0.8828
30 R A -1.2656
31 S A -0.6590
32 G A -0.4209
33 Y A 0.9251
34 S A 0.1037
35 T A -0.3588
36 A A -0.8299
37 R A -1.8030
38 S A -0.7636
39 A A 0.0660
40 Y A 1.0831
41 S A 0.6036
42 S A 0.6103
43 Y A 1.1900
44 S A 0.5348
45 A A 0.5386
46 P A 0.6596
47 V A 1.4644
48 S A 0.6131
49 S A 0.2924
50 S A 0.7120
51 L A 1.5091
52 S A 0.6002
53 V A 0.6941
54 R A -1.6723
55 R A -2.1405
56 S A -0.8120
57 Y A 0.3489
58 S A -0.0309
59 S A -0.1930
60 S A -0.4632
61 S A -0.6746
62 G A -0.3204
63 S A 0.4155
64 L A 1.8048
65 M A 1.7497
66 P A 0.7546
67 S A -0.0036
68 L A 0.5459
69 E A -1.7325
70 N A -1.5721
71 L A -0.3422
72 D A -1.3175
73 L A 0.6877
74 S A 0.0145
75 Q A -0.3350
76 V A 0.2844
77 A A -0.1371
78 A A -0.4538
79 I A 0.0180
80 S A -0.8531
81 N A -2.1837
82 D A -1.9234
83 L A -1.0415
84 K A -2.6699
85 S A -1.9647
86 I A -1.0041
87 R A -3.1267
88 T A -2.5827
89 Q A -2.8510
90 E A -3.6758
91 K A -3.4566
92 A A -2.7023
93 Q A -3.1278
94 L A -2.3232
95 Q A -3.1497
96 D A -2.8202
97 L A -1.6014
98 N A -2.1125
99 D A -2.7067
100 R A -1.8179
101 F A 0.4366
102 A A -0.3792
103 S A -0.6668
104 F A 0.7805
105 I A 0.3977
106 E A -2.2403
107 R A -2.3516
108 V A -1.5851
109 H A -3.2636
110 E A -4.1407
111 L A -2.8874
112 E A -3.9314
113 Q A -3.8520
114 Q A -2.9498
115 N A -3.3295
116 K A -3.1252
117 V A -0.4631
118 L A -0.4215
119 E A -1.4957
120 A A -0.3355
121 E A -0.6130
122 L A 0.0995
123 L A 0.8017
124 V A 0.5511
125 L A -0.8039
126 R A -2.2760
127 Q A -2.3829
128 K A -2.7788
129 H A -3.0910
130 S A -2.7272
131 E A -2.9734
132 P A -1.6523
133 S A -1.4745
134 R A -1.8689
135 F A 0.1401
136 R A -1.7461
137 A A -1.1799
138 L A -0.0322
139 Y A -0.4664
140 E A -2.4550
141 Q A -2.5360
142 E A -2.3295
143 I A -1.6365
144 R A -2.9436
145 D A -2.1377
146 L A -1.0442
147 R A -2.5548
148 L A -1.6380
149 A A -1.3710
150 A A -2.0774
151 E A -3.5304
152 D A -3.8544
153 A A -3.1777
154 T A -3.2264
155 N A -4.2016
156 E A -4.3144
157 K A -4.2250
158 Q A -3.7991
159 A A -2.9521
160 L A -2.7500
161 Q A -3.4235
162 G A -3.2618
163 E A -3.7657
164 R A -3.9820
165 E A -3.9664
166 G A -2.8385
167 L A -1.7791
168 E A -3.3345
169 E A -3.5916
170 T A -1.5444
171 L A -0.9221
172 R A -2.7499
173 N A -2.3516
174 L A -1.4037
175 Q A -2.4837
176 A A -2.4243
177 R A -2.7291
178 Y A -1.3150
179 E A -2.5077
180 E A -3.0181
181 E A -2.5894
182 V A -0.6419
183 L A -1.0345
184 S A -2.2469
185 R A -3.7490
186 E A -3.7907
187 D A -3.6363
188 A A -3.0391
189 E A -3.7299
190 G A -3.4526
191 R A -3.7089
192 L A -1.8620
193 M A -2.1525
194 E A -3.5377
195 A A -2.8634
196 R A -3.7935
197 K A -4.3031
198 G A -2.9630
199 A A -2.6727
200 D A -3.7468
201 E A -3.1635
202 A A -2.0949
203 A A -1.3745
204 L A -0.5773
205 A A -1.4669
206 R A -2.7291
207 A A -2.1045
208 E A -2.8871
209 L A -1.7764
210 E A -3.4092
211 K A -3.9743
212 R A -3.3328
213 I A -1.6030
214 D A -3.0118
215 S A -2.1648
216 L A -0.8829
217 M A -0.3142
218 D A -1.6631
219 E A -1.0115
220 I A 0.3428
221 S A -0.0802
222 F A 0.6937
223 L A -0.3886
224 K A -2.7393
225 K A -2.8130
226 V A -1.7465
227 H A -3.0932
228 E A -3.8630
229 E A -3.9551
230 E A -3.1279
231 I A -0.7946
232 A A -1.4707
233 E A -2.3572
234 L A -0.0570
235 Q A -0.4173
236 A A -0.5333
237 Q A -0.2194
238 I A 0.7980
239 Q A 0.1307
240 Y A 1.4504
241 A A 0.8098
242 Q A 0.1900
243 I A 1.6415
244 S A 1.2368
245 V A 1.2131
246 E A -0.5690
247 M A 0.4178
248 D A -0.9268
249 V A 0.4194
250 T A -0.6195
251 K A -1.8057
252 P A -1.2099
253 D A -1.6895
254 L A -0.2562
255 S A -0.5357
256 A A -1.1780
257 A A -0.9242
258 L A -0.9099
259 K A -2.3734
260 D A -2.5507
261 I A -1.3463
262 R A -2.8000
263 A A -2.4968
264 Q A -1.9910
265 Y A -1.0813
266 E A -2.7870
267 K A -2.5095
268 L A -1.0818
269 A A -1.2523
270 A A -1.7930
271 K A -2.8985
272 N A -2.8561
273 M A -1.6298
274 Q A -2.9347
275 N A -3.2933
276 A A -2.1280
277 E A -3.3132
278 E A -3.1122
279 W A -0.8386
280 F A -0.1202
281 K A -1.3028
282 S A -0.1542
283 R A 0.3454
284 F A 1.8729
285 T A 1.1253
286 V A 1.9255
287 L A 1.7686
288 T A 0.3241
289 E A -1.2695
290 S A -0.8294
291 A A -1.1025
292 A A -1.6760
293 K A -3.1223
294 N A -2.6128
295 T A -1.9141
296 D A -2.7044
297 A A -1.6880
298 V A -0.9782
299 R A -2.9443
300 A A -2.2065
301 A A -1.8769
302 K A -3.1349
303 D A -3.8251
304 E A -3.5762
305 V A -2.0036
306 S A -2.6893
307 E A -3.3443
308 S A -2.2341
309 R A -3.1433
310 R A -3.2085
311 L A -1.0517
312 L A -0.8989
313 K A -2.1937
314 A A -1.5189
315 K A -1.8227
316 T A -0.8385
317 L A -0.4694
318 E A -1.7739
319 I A -0.5530
320 E A -1.9168
321 A A -1.2942
322 C A -0.9577
323 R A -2.5577
324 G A -2.0456
325 M A -0.9737
326 N A -2.9607
327 E A -3.3974
328 A A -2.1267
329 L A -1.9516
330 E A -3.3947
331 K A -3.8056
332 Q A -2.9117
333 L A -1.9757
334 Q A -3.7885
335 E A -4.2591
336 L A -2.7729
337 E A -4.4944
338 D A -4.8059
339 K A -4.3800
340 Q A -3.9558
341 N A -3.4144
342 A A -2.5218
343 D A -2.8567
344 I A -0.7522
345 S A -1.1356
346 A A -1.0690
347 M A -0.5278
348 Q A -1.5131
349 D A -2.6659
350 T A -1.3815
351 I A -1.3477
352 N A -3.0144
353 K A -3.3046
354 L A -1.8224
355 E A -3.1107
356 N A -3.3314
357 E A -3.3660
358 L A -2.7330
359 R A -3.5794
360 T A -2.4774
361 T A -2.3372
362 K A -2.7782
363 S A -1.8365
364 E A -1.4862
365 M A -0.5741
366 A A -0.5507
367 R A -1.1485
368 Y A -0.0242
369 L A 0.6143
370 K A -1.6465
371 E A -1.2243
372 Y A 0.5231
373 Q A -1.2142
374 D A -1.6218
375 L A 0.3491
376 L A 0.1226
377 N A -0.3958
378 V A 1.2492
379 K A -0.5209
380 M A 0.3565
381 A A 0.9087
382 L A 0.9659
383 D A -0.2478
384 I A 1.1856
385 E A -0.5475
386 I A 0.4829
387 A A -0.0761
388 A A -0.0759
389 Y A 0.3039
390 R A -1.7512
391 K A -2.2963
392 L A -0.1827
393 L A -1.5855
394 E A -3.2383
395 G A -2.3911
396 E A -2.9588
397 E A -2.9658
398 T A -1.9383
399 R A -2.0540
400 L A -0.2865
401 S A 0.2489
402 F A 1.4833
403 T A 0.9440
404 S A 0.8318
405 V A 2.1434
406 G A 0.7188
407 S A 0.9123
408 I A 1.9066
409 T A 0.7237
410 S A 0.2044
411 G A -0.1291
412 Y A 0.5793
413 S A -0.3808
414 Q A -1.3103
415 S A -0.9341
416 S A -0.6080
417 Q A -0.2246
418 V A 1.7760
419 F A 1.8223
420 G A -0.2162
421 R A -1.3593
422 S A -0.7097
423 A A -0.1692
424 Y A 0.9087
425 G A 0.1452
426 G A 0.0852
427 L A 0.7428
428 Q A -0.7389
429 T A -0.3031
430 S A 0.0305
431 S A 0.7097
432 Y A 2.1316
433 L A 2.5614
434 M A 1.7405
435 S A 0.3210
436 T A -0.3946
437 R A -1.4712
438 S A -0.2989
439 F A 1.3753
440 P A 0.8386
441 S A 1.0947
442 Y A 1.9826
443 Y A 1.6433
444 T A 0.7246
445 S A 0.1269
446 H A -0.6770
447 V A -0.1051
448 Q A -2.2109
449 E A -2.9818
450 E A -3.0832
451 Q A -2.0301
452 I A 0.0186
453 E A -1.2730
454 V A -0.0281
455 E A -1.8694
456 E A -2.2517
457 T A -0.5560
458 I A 0.3801
459 E A -1.3680
460 A A -0.6908
461 A A -1.2128
462 K A -2.5800
463 A A -2.2186
464 E A -3.2516
465 E A -3.2905
466 A A -2.7384
467 K A -3.5793
468 D A -3.5816
469 E A -3.2475
470 P A -1.6933
471 P A -1.3638
472 S A -1.5692
473 E A -2.5910
474 G A -2.5213
475 E A -3.1056
476 A A -2.8203
477 E A -4.1739
478 E A -4.9190
479 E A -5.3154
480 E A -5.9174
481 K A -6.0032
482 D A -6.0126
483 K A -6.1179
484 E A -6.1824
485 E A -6.1636
486 A A -5.1480
487 E A -5.6434
488 E A -5.6126
489 E A -5.4687
490 E A -5.3845
491 A A -4.3586
492 A A -4.3647
493 E A -5.2775
494 E A -4.9822
495 E A -4.9234
496 E A -5.0268
497 A A -4.0414
498 A A -3.9940
499 K A -5.1322
500 E A -5.3312
501 E A -4.8236
502 S A -4.3371
503 E A -5.4925
504 E A -5.7936
505 A A -4.8500
506 K A -5.6003
507 E A -5.7702
508 E A -5.4961
509 E A -5.3403
510 E A -4.9728
511 G A -4.1471
512 G A -3.6489
513 E A -3.8679
514 G A -3.1899
515 E A -4.1611
516 E A -4.1966
517 G A -3.7881
518 E A -4.4993
519 E A -4.5804
520 T A -3.7227
521 K A -4.7537
522 E A -5.0127
523 A A -4.1993
524 E A -5.4542
525 E A -5.2890
526 E A -5.4219
527 E A -5.1367
528 K A -4.9157
529 K A -4.1066
530 V A -2.0171
531 E A -3.5237
532 G A -3.0476
533 A A -2.2886
534 G A -2.6862
535 E A -3.6617
536 E A -3.9938
537 Q A -3.7346
538 A A -3.0277
539 A A -3.3723
540 K A -4.3604
541 K A -4.2207
542 K A -3.9785
543 D A -3.4741
Download PDB file
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is partially or entirely disordered. Average score is recommended for pH analysis.

pH
Average A4D Score
Max A4D Score
4.0 -1.2634 3.8149 View CSV PDB
4.5 -1.4764 3.7503 View CSV PDB
5.0 -1.7699 3.6647 View CSV PDB
5.5 -2.0916 3.5891 View CSV PDB
6.0 -2.3808 3.5607 View CSV PDB
6.5 -2.5862 3.6015 View CSV PDB
7.0 -2.6836 3.7069 View CSV PDB
7.5 -2.6912 3.8548 View CSV PDB
8.0 -2.6477 4.0226 View CSV PDB
8.5 -2.5778 4.197 View CSV PDB
9.0 -2.4894 4.3716 View CSV PDB