Chain sequence(s) |
A: MVLSHAVSESDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELDELPSRVIHKISLGQEKSESNSDNLMVTVKKSDIDKQRDIITGWKKFVADRKKTSGIC
input PDB |
Selected Chain(s) | A |
Distance of aggregation | 10 Å |
FoldX usage | Yes |
pH calculations | Yes |
alphaCutter usage | No |
Dynamic mode | No |
Automated mutations | No |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] PDB-Info: The input structure is globular. Max score is recommended for pH analysis. (00:00:02) [INFO] FoldX: Starting FoldX energy minimization (00:00:02) [INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:07:51) [INFO] agg3D: Running pKa-ANI on /STORAGE/DATA/lcbio/aggreskan/4aadd0762b81aef/tmp/folded.pdb (00:07:51) [INFO] Main: Simulation completed successfully. (00:10:07) |
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan4D score | mutation |
---|---|---|---|---|
1 | M | A | 2.2851 | |
2 | V | A | 2.8532 | |
3 | L | A | 2.3040 | |
4 | S | A | 0.9311 | |
5 | H | A | 0.0498 | |
6 | A | A | 0.3025 | |
7 | V | A | 0.6799 | |
8 | S | A | -0.7158 | |
9 | E | A | -1.8376 | |
10 | S | A | -1.3105 | |
11 | D | A | -1.3852 | |
12 | V | A | 0.1436 | |
13 | S | A | 0.0556 | |
14 | V | A | 1.2218 | |
15 | H | A | -0.0307 | |
16 | S | A | -0.1359 | |
17 | T | A | 0.1029 | |
18 | F | A | 1.3116 | |
19 | A | A | 0.2892 | |
20 | S | A | -0.5827 | |
21 | R | A | -2.0264 | |
22 | Y | A | -0.5655 | |
23 | V | A | -0.4003 | |
24 | R | A | -1.9405 | |
25 | T | A | -1.1398 | |
26 | S | A | -0.6667 | |
27 | L | A | -0.1119 | |
28 | P | A | -0.6918 | |
29 | R | A | -1.2265 | |
30 | F | A | 0.4200 | |
31 | K | A | -1.0515 | |
32 | M | A | -0.3371 | |
33 | P | A | -1.2468 | |
34 | E | A | -2.4307 | |
35 | N | A | -1.9699 | |
36 | S | A | -1.1062 | |
37 | I | A | -0.5018 | |
38 | P | A | -0.9453 | |
39 | K | A | -2.1227 | |
40 | E | A | -2.1643 | |
41 | A | A | 0.0000 | |
42 | A | A | -0.0290 | |
43 | Y | A | 0.2827 | |
44 | Q | A | -0.1304 | |
45 | I | A | 0.4329 | |
46 | I | A | 0.9807 | |
47 | N | A | 0.3214 | |
48 | D | A | -0.3947 | |
49 | E | A | -0.8690 | |
50 | L | A | 0.6030 | |
51 | M | A | 0.7429 | |
52 | L | A | 0.6518 | |
53 | D | A | -1.0951 | |
54 | G | A | -1.3141 | |
55 | N | A | -1.7455 | |
56 | P | A | -1.3567 | |
57 | R | A | -1.0548 | |
58 | L | A | -0.7628 | |
59 | N | A | -0.8269 | |
60 | L | A | 0.0000 | |
61 | A | A | -0.0250 | |
62 | S | A | -0.0745 | |
63 | F | A | 0.0000 | |
64 | V | A | 0.3736 | |
65 | T | A | 0.0000 | |
66 | T | A | -0.1054 | |
67 | W | A | 0.1513 | |
68 | M | A | 0.0000 | |
69 | E | A | -1.3338 | |
70 | P | A | -1.8771 | |
71 | E | A | -2.7208 | |
72 | C | A | 0.0000 | |
73 | D | A | -1.8276 | |
74 | K | A | -2.2332 | |
75 | L | A | -0.4821 | |
76 | I | A | 0.0667 | |
77 | M | A | 0.8264 | |
78 | S | A | 0.1991 | |
79 | S | A | 0.0000 | |
80 | I | A | 1.4244 | |
81 | N | A | -0.5969 | |
82 | K | A | -1.0548 | |
83 | N | A | -0.9163 | |
84 | Y | A | 0.0000 | |
85 | V | A | 0.0000 | |
86 | D | A | -0.9716 | |
87 | M | A | -1.1799 | |
88 | D | A | -1.8645 | |
89 | E | A | -2.1233 | |
90 | Y | A | -0.8749 | |
91 | P | A | -0.4788 | |
92 | V | A | 0.7883 | |
93 | T | A | 0.0000 | |
94 | T | A | -0.9517 | |
95 | E | A | -1.7474 | |
96 | L | A | -0.9846 | |
97 | Q | A | 0.0000 | |
98 | N | A | -1.8157 | |
99 | R | A | -2.5117 | |
100 | C | A | 0.0000 | |
101 | V | A | 0.0000 | |
102 | N | A | -1.2042 | |
103 | M | A | -0.4046 | |
104 | I | A | 0.0000 | |
105 | A | A | 0.0000 | |
106 | H | A | -0.8655 | |
107 | L | A | -0.4794 | |
108 | F | A | 0.0000 | |
109 | N | A | -1.7513 | |
110 | A | A | -1.2754 | |
111 | P | A | -1.2967 | |
112 | L | A | -1.9895 | |
113 | E | A | -3.1353 | |
114 | E | A | -3.1201 | |
115 | A | A | -2.3246 | |
116 | E | A | -2.7810 | |
117 | T | A | -1.6505 | |
118 | A | A | 0.0000 | |
119 | V | A | -0.6979 | |
120 | G | A | -0.2128 | |
121 | V | A | 0.1415 | |
122 | G | A | 0.0000 | |
123 | T | A | 0.0000 | |
124 | V | A | 0.4554 | |
125 | G | A | 0.0000 | |
126 | S | A | 0.0000 | |
127 | S | A | 0.0857 | |
128 | E | A | 0.0000 | |
129 | A | A | 0.0000 | |
130 | I | A | 0.0000 | |
131 | M | A | 0.4087 | |
132 | L | A | 0.0000 | |
133 | A | A | 0.0000 | |
134 | G | A | 0.0000 | |
135 | L | A | 0.0372 | |
136 | A | A | 0.0000 | |
137 | F | A | 0.0000 | |
138 | K | A | -0.8414 | |
139 | R | A | -1.5701 | |
140 | K | A | -2.1595 | |
141 | W | A | 0.0000 | |
142 | Q | A | -2.2020 | |
143 | N | A | -2.2629 | |
144 | K | A | -2.6989 | |
145 | R | A | -3.0110 | |
146 | K | A | -3.3209 | |
147 | A | A | -2.4503 | |
148 | E | A | -3.3440 | |
149 | G | A | -2.7761 | |
150 | K | A | -3.1384 | |
151 | P | A | -2.2999 | |
152 | V | A | -2.1666 | |
153 | D | A | -2.9396 | |
154 | K | A | -3.2908 | |
155 | P | A | 0.0000 | |
156 | N | A | 0.0000 | |
157 | I | A | 0.0000 | |
158 | V | A | 0.0000 | |
159 | T | A | 0.0000 | |
160 | G | A | 0.0000 | |
161 | A | A | -1.0950 | |
162 | N | A | 0.0000 | |
163 | V | A | -0.0306 | |
164 | Q | A | -0.0761 | |
165 | V | A | 0.5811 | |
166 | C | A | 0.0000 | |
167 | W | A | 0.0000 | |
168 | E | A | -1.1800 | |
169 | K | A | -1.1279 | |
170 | F | A | 0.0000 | |
171 | A | A | 0.0000 | |
172 | R | A | -2.3873 | |
173 | Y | A | -0.1936 | |
174 | F | A | -0.7565 | |
175 | E | A | -2.8097 | |
176 | V | A | 0.0000 | |
177 | E | A | -3.0461 | |
178 | L | A | -1.7033 | |
179 | K | A | -1.2718 | |
180 | E | A | -1.8083 | |
181 | V | A | 0.0000 | |
182 | K | A | -2.2948 | |
183 | L | A | 0.0000 | |
184 | S | A | -1.8280 | |
185 | E | A | -2.3604 | |
186 | G | A | -0.9538 | |
187 | Y | A | -0.2835 | |
188 | Y | A | 0.0000 | |
189 | V | A | 0.0000 | |
190 | M | A | 0.0000 | |
191 | D | A | -1.1776 | |
192 | P | A | 0.0000 | |
193 | Q | A | -1.7279 | |
194 | Q | A | -2.4410 | |
195 | A | A | 0.0000 | |
196 | V | A | 0.0000 | |
197 | D | A | -2.3162 | |
198 | M | A | -1.2345 | |
199 | V | A | 0.0000 | |
200 | D | A | -1.0515 | |
201 | E | A | -1.6437 | |
202 | N | A | -1.7160 | |
203 | T | A | 0.0000 | |
204 | I | A | 0.0000 | |
205 | C | A | 0.0000 | |
206 | V | A | 0.0000 | |
207 | A | A | 0.0000 | |
208 | A | A | 0.0000 | |
209 | I | A | 0.0000 | |
210 | L | A | 0.0000 | |
211 | G | A | 0.0075 | |
212 | S | A | 0.0000 | |
213 | T | A | -0.0668 | |
214 | L | A | 0.0755 | |
215 | N | A | 0.0000 | |
216 | G | A | 0.0000 | |
217 | E | A | -1.1519 | |
218 | F | A | -0.6174 | |
219 | E | A | 0.0000 | |
220 | D | A | -1.6021 | |
221 | V | A | 0.0000 | |
222 | K | A | -1.4342 | |
223 | L | A | -0.5469 | |
224 | L | A | 0.0000 | |
225 | N | A | 0.0000 | |
226 | D | A | -0.8604 | |
227 | L | A | -0.9087 | |
228 | L | A | 0.0000 | |
229 | V | A | -1.6575 | |
230 | E | A | -2.9153 | |
231 | K | A | -2.7756 | |
232 | N | A | -2.7463 | |
233 | K | A | -3.6131 | |
234 | E | A | -3.2395 | |
235 | T | A | -2.3018 | |
236 | G | A | -2.1908 | |
237 | W | A | -1.7871 | |
238 | D | A | -2.2022 | |
239 | T | A | 0.0000 | |
240 | P | A | -0.5012 | |
241 | I | A | 0.0000 | |
242 | H | A | 0.0000 | |
243 | V | A | 0.0000 | |
244 | D | A | 0.0000 | |
245 | A | A | 0.0000 | |
246 | A | A | -0.1390 | |
247 | S | A | 0.0000 | |
248 | G | A | 0.0000 | |
249 | G | A | 0.0000 | |
250 | F | A | 0.0000 | |
251 | I | A | 0.0000 | |
252 | A | A | 0.0000 | |
253 | P | A | 0.0000 | |
254 | F | A | 0.0000 | |
255 | L | A | -0.9032 | |
256 | Y | A | -0.6432 | |
257 | P | A | -0.8797 | |
258 | E | A | -1.8512 | |
259 | L | A | -1.2704 | |
260 | E | A | -1.9519 | |
261 | W | A | 0.0000 | |
262 | D | A | 0.0000 | |
263 | F | A | 0.0000 | |
264 | R | A | -1.6495 | |
265 | L | A | 0.0000 | |
266 | P | A | -0.6147 | |
267 | L | A | -0.5962 | |
268 | V | A | 0.0000 | |
269 | K | A | -0.7431 | |
270 | S | A | 0.0000 | |
271 | I | A | 0.0000 | |
272 | N | A | 0.0000 | |
273 | V | A | 0.0000 | |
274 | S | A | 0.0000 | |
275 | G | A | 0.0000 | |
276 | H | A | 0.0484 | |
277 | K | A | -0.1207 | |
278 | Y | A | 0.0000 | |
279 | G | A | 0.0000 | |
280 | L | A | 0.0000 | |
281 | V | A | 0.0000 | |
282 | Y | A | 0.3148 | |
283 | A | A | 0.2230 | |
284 | G | A | -0.0034 | |
285 | I | A | 0.0000 | |
286 | G | A | 0.0000 | |
287 | W | A | 0.0000 | |
288 | V | A | 0.0000 | |
289 | I | A | 0.0000 | |
290 | W | A | 0.0000 | |
291 | R | A | -1.4194 | |
292 | N | A | -1.8879 | |
293 | K | A | -2.8912 | |
294 | E | A | -2.9539 | |
295 | D | A | -2.1336 | |
296 | L | A | 0.0000 | |
297 | P | A | 0.0000 | |
298 | E | A | -2.7154 | |
299 | E | A | -1.8800 | |
300 | L | A | -0.5004 | |
301 | I | A | 0.2630 | |
302 | F | A | 0.8721 | |
303 | H | A | -0.5673 | |
304 | I | A | 0.0000 | |
305 | N | A | -1.5010 | |
306 | Y | A | 0.2778 | |
307 | L | A | -0.3788 | |
308 | G | A | -1.1480 | |
309 | A | A | -1.6874 | |
310 | D | A | -2.3026 | |
311 | Q | A | 0.0000 | |
312 | P | A | -0.5799 | |
313 | T | A | 0.6171 | |
314 | F | A | 0.0000 | |
315 | T | A | 0.9973 | |
316 | L | A | 1.0737 | |
317 | N | A | 0.5330 | |
318 | F | A | 0.9794 | |
319 | S | A | -0.1371 | |
320 | K | A | -0.4413 | |
321 | G | A | -0.5370 | |
322 | S | A | 0.0000 | |
323 | S | A | 0.0000 | |
324 | Q | A | 0.1885 | |
325 | V | A | 0.0000 | |
326 | I | A | 0.5728 | |
327 | A | A | 0.0000 | |
328 | Q | A | 0.0000 | |
329 | Y | A | 0.3431 | |
330 | Y | A | 0.3945 | |
331 | Q | A | 0.0000 | |
332 | L | A | 0.5796 | |
333 | I | A | 1.4261 | |
334 | R | A | -0.5980 | |
335 | L | A | -0.8228 | |
336 | G | A | -0.8211 | |
337 | H | A | -1.9852 | |
338 | E | A | -3.0066 | |
339 | G | A | -2.0006 | |
340 | Y | A | 0.0000 | |
341 | R | A | -2.9240 | |
342 | N | A | -3.1950 | |
343 | V | A | -2.2584 | |
344 | M | A | 0.0000 | |
345 | E | A | -3.6169 | |
346 | N | A | -3.4560 | |
347 | C | A | 0.0000 | |
348 | R | A | -2.8731 | |
349 | E | A | -2.8865 | |
350 | N | A | 0.0000 | |
351 | M | A | 0.0000 | |
352 | I | A | -1.0761 | |
353 | V | A | -0.9128 | |
354 | L | A | 0.0000 | |
355 | R | A | 0.0000 | |
356 | E | A | -1.9346 | |
357 | G | A | -1.7545 | |
358 | L | A | 0.0000 | |
359 | E | A | -3.7446 | |
360 | K | A | -3.5323 | |
361 | T | A | -2.7286 | |
362 | E | A | -3.7290 | |
363 | R | A | -3.2806 | |
364 | F | A | 0.0000 | |
365 | N | A | -2.4614 | |
366 | I | A | -1.3499 | |
367 | V | A | -0.5477 | |
368 | S | A | 0.0000 | |
369 | K | A | -2.8428 | |
370 | D | A | -3.1408 | |
371 | E | A | -2.5605 | |
372 | G | A | 0.0000 | |
373 | V | A | 0.0000 | |
374 | P | A | 0.0000 | |
375 | L | A | 0.0000 | |
376 | V | A | 0.0000 | |
377 | A | A | 0.0000 | |
378 | F | A | 0.0000 | |
379 | S | A | -1.0447 | |
380 | L | A | -2.0592 | |
381 | K | A | -3.4111 | |
382 | D | A | -2.9650 | |
383 | S | A | -1.4531 | |
384 | S | A | -1.0591 | |
385 | C | A | -0.5679 | |
386 | H | A | -0.7391 | |
387 | T | A | -0.2556 | |
388 | E | A | 0.0000 | |
389 | F | A | 0.4891 | |
390 | E | A | -0.4402 | |
391 | I | A | 0.0000 | |
392 | S | A | -0.9425 | |
393 | D | A | -2.1598 | |
394 | M | A | -1.6387 | |
395 | L | A | 0.0000 | |
396 | R | A | -2.3126 | |
397 | R | A | -2.4838 | |
398 | Y | A | -1.0984 | |
399 | G | A | -1.2625 | |
400 | W | A | 0.0000 | |
401 | I | A | -0.8755 | |
402 | V | A | 0.0000 | |
403 | P | A | -0.0582 | |
404 | A | A | 0.1487 | |
405 | Y | A | 0.2661 | |
406 | T | A | -0.4816 | |
407 | M | A | 0.0000 | |
408 | P | A | -1.0792 | |
409 | P | A | -1.7814 | |
410 | N | A | -2.5741 | |
411 | A | A | 0.0000 | |
412 | Q | A | -2.2213 | |
413 | H | A | -1.9049 | |
414 | I | A | -1.0830 | |
415 | T | A | -0.1676 | |
416 | V | A | 0.0000 | |
417 | L | A | 0.0000 | |
418 | R | A | -0.0884 | |
419 | V | A | 0.0000 | |
420 | V | A | 0.0000 | |
421 | I | A | 0.0000 | |
422 | R | A | 0.0000 | |
423 | E | A | -0.9642 | |
424 | D | A | 0.0000 | |
425 | F | A | 0.0000 | |
426 | S | A | -1.0386 | |
427 | R | A | -1.5545 | |
428 | T | A | -0.9635 | |
429 | L | A | -0.5462 | |
430 | A | A | 0.0000 | |
431 | E | A | -1.4105 | |
432 | R | A | -0.8681 | |
433 | L | A | 0.0000 | |
434 | V | A | -0.1194 | |
435 | I | A | 0.6439 | |
436 | D | A | 0.0000 | |
437 | I | A | 0.0000 | |
438 | E | A | -1.1476 | |
439 | K | A | -1.7527 | |
440 | V | A | 0.0000 | |
441 | M | A | 0.0000 | |
442 | R | A | -3.5384 | |
443 | E | A | -2.6841 | |
444 | L | A | 0.0000 | |
445 | D | A | -3.3942 | |
446 | E | A | -3.0291 | |
447 | L | A | -1.3534 | |
448 | P | A | -0.3573 | |
449 | S | A | -0.5805 | |
450 | R | A | -0.8448 | |
451 | V | A | 0.8239 | |
452 | I | A | 1.8543 | |
453 | H | A | 0.0187 | |
454 | K | A | -0.6204 | |
455 | I | A | 1.4155 | |
456 | S | A | 0.2570 | |
457 | L | A | -0.4266 | |
458 | G | A | -1.5276 | |
459 | Q | A | -2.6790 | |
460 | E | A | -3.6640 | |
461 | K | A | -3.6895 | |
462 | S | A | -2.8719 | |
463 | E | A | -3.1578 | |
464 | S | A | -2.2344 | |
465 | N | A | -2.5381 | |
466 | S | A | -2.0665 | |
467 | D | A | -2.3798 | |
468 | N | A | -1.1667 | |
469 | L | A | 1.4675 | |
470 | M | A | 2.3230 | |
471 | V | A | 2.7767 | |
472 | T | A | 1.4570 | |
473 | V | A | 1.0659 | |
474 | K | A | -1.8086 | |
475 | K | A | -2.6462 | |
476 | S | A | -2.1175 | |
477 | D | A | -2.6863 | |
478 | I | A | -0.7673 | |
479 | D | A | -2.6659 | |
480 | K | A | -2.8786 | |
481 | Q | A | -2.1854 | |
482 | R | A | -2.8075 | |
483 | D | A | -2.9560 | |
484 | I | A | -1.3088 | |
485 | I | A | -0.8901 | |
486 | T | A | -1.6292 | |
487 | G | A | -1.4225 | |
488 | W | A | -0.7054 | |
489 | K | A | -1.9948 | |
490 | K | A | -2.6074 | |
491 | F | A | -1.3454 | |
492 | V | A | -1.5638 | |
493 | A | A | -2.7329 | |
494 | D | A | -3.8722 | |
495 | R | A | -3.7929 | |
496 | K | A | -3.9141 | |
497 | K | A | -3.5286 | |
498 | T | A | -2.2470 | |
499 | S | A | -1.4830 | |
500 | G | A | -0.3656 | |
501 | I | A | 1.8911 | |
502 | C | A | 1.5743 |
Calculations for various pH values
This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is globular. Max score is recommended for pH analysis.
pH |
Average A4D Score |
Max A4D Score |
|||
4.0 | -0.6466 | 3.5814 | View | CSV | PDB |
4.5 | -0.7391 | 3.456 | View | CSV | PDB |
5.0 | -0.8532 | 3.3144 | View | CSV | PDB |
5.5 | -0.9676 | 3.2003 | View | CSV | PDB |
6.0 | -1.0608 | 3.1366 | View | CSV | PDB |
6.5 | -1.1173 | 3.1565 | View | CSV | PDB |
7.0 | -1.1351 | 3.1979 | View | CSV | PDB |
7.5 | -1.1253 | 3.2478 | View | CSV | PDB |
8.0 | -1.1002 | 3.3014 | View | CSV | PDB |
8.5 | -1.0642 | 3.3561 | View | CSV | PDB |
9.0 | -1.0166 | 3.411 | View | CSV | PDB |