| Chain sequence(s) |
A: VGSLNCIVAVSQNMGIGKNGDLPWPPLRNEGRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEKND
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | No |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:02)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:02)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:02)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:02)
[INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:02)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:00:02)
[INFO] Main: Simulation completed successfully. (00:00:04)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 1 | V | A | 0.4357 | |
| 2 | G | A | 0.3483 | |
| 3 | S | A | -0.0092 | |
| 4 | L | A | 0.0803 | |
| 5 | N | A | 0.0000 | |
| 6 | C | A | 0.0000 | |
| 7 | I | A | 0.0000 | |
| 8 | V | A | 0.0000 | |
| 9 | A | A | 0.1812 | |
| 10 | V | A | 0.0000 | |
| 11 | S | A | 0.0000 | |
| 12 | Q | A | -2.0761 | |
| 13 | N | A | -1.5989 | |
| 14 | M | A | -0.6108 | |
| 15 | G | A | 0.0000 | |
| 16 | I | A | 0.0657 | |
| 17 | G | A | 0.0000 | |
| 18 | K | A | -2.1326 | |
| 19 | N | A | -2.2979 | |
| 20 | G | A | -1.7816 | |
| 21 | D | A | -1.8868 | |
| 22 | L | A | 0.2774 | |
| 23 | P | A | -0.9551 | |
| 24 | W | A | 0.0000 | |
| 25 | P | A | -0.5807 | |
| 26 | P | A | -1.0795 | |
| 27 | L | A | 0.0000 | |
| 28 | R | A | -3.1114 | |
| 29 | N | A | -3.0059 | |
| 30 | E | A | -2.3422 | |
| 31 | G | A | -2.3920 | |
| 32 | R | A | -3.3525 | |
| 33 | Y | A | 0.0000 | |
| 34 | F | A | -1.4099 | |
| 35 | Q | A | -2.2940 | |
| 36 | R | A | -2.3467 | |
| 37 | M | A | -1.0989 | |
| 38 | T | A | 0.0000 | |
| 39 | T | A | -1.1630 | |
| 40 | T | A | -0.7356 | |
| 41 | S | A | -0.8408 | |
| 42 | S | A | -0.4468 | |
| 43 | V | A | -0.5843 | |
| 44 | E | A | -2.0392 | |
| 45 | G | A | -1.9660 | |
| 46 | K | A | -1.9042 | |
| 47 | Q | A | -1.6582 | |
| 48 | N | A | 0.0000 | |
| 49 | L | A | 0.0000 | |
| 50 | V | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | M | A | 0.0000 | |
| 53 | G | A | -0.9781 | |
| 54 | K | A | -1.3671 | |
| 55 | K | A | -1.6200 | |
| 56 | T | A | -0.7119 | |
| 57 | W | A | 0.0000 | |
| 58 | F | A | 0.3995 | |
| 59 | S | A | -0.5298 | |
| 60 | I | A | -0.8832 | |
| 61 | P | A | -1.7169 | |
| 62 | E | A | -2.9213 | |
| 63 | K | A | -3.0482 | |
| 64 | N | A | -2.5908 | |
| 65 | R | A | -2.1990 | |
| 66 | P | A | -1.8791 | |
| 67 | L | A | 0.0000 | |
| 68 | K | A | -2.1205 | |
| 69 | G | A | -1.3881 | |
| 70 | R | A | 0.0000 | |
| 71 | I | A | -0.5215 | |
| 72 | N | A | 0.0000 | |
| 73 | L | A | 0.0000 | |
| 74 | V | A | 0.0000 | |
| 75 | L | A | -1.3453 | |
| 76 | S | A | 0.0000 | |
| 77 | R | A | -3.5984 | |
| 78 | E | A | -3.5003 | |
| 79 | L | A | -2.7316 | |
| 80 | K | A | -3.3264 | |
| 81 | E | A | -2.8704 | |
| 82 | P | A | -1.5490 | |
| 83 | P | A | -1.1891 | |
| 84 | Q | A | -1.9053 | |
| 85 | G | A | -1.3254 | |
| 86 | A | A | -0.8788 | |
| 87 | H | A | -0.7296 | |
| 88 | F | A | 0.0762 | |
| 89 | L | A | -1.0664 | |
| 90 | S | A | 0.0000 | |
| 91 | R | A | -3.3527 | |
| 92 | S | A | -2.3191 | |
| 93 | L | A | 0.0000 | |
| 94 | D | A | -2.7769 | |
| 95 | D | A | -2.4921 | |
| 96 | A | A | 0.0000 | |
| 97 | L | A | -1.4515 | |
| 98 | K | A | -2.5321 | |
| 99 | L | A | -1.8420 | |
| 100 | T | A | 0.0000 | |
| 101 | E | A | -2.5762 | |
| 102 | Q | A | -2.3652 | |
| 103 | P | A | -2.1028 | |
| 104 | E | A | -2.5446 | |
| 105 | L | A | 0.0000 | |
| 106 | A | A | -2.0505 | |
| 107 | N | A | -2.4996 | |
| 108 | K | A | -2.4328 | |
| 109 | V | A | 0.0000 | |
| 110 | D | A | 0.0000 | |
| 111 | M | A | 0.0801 | |
| 112 | V | A | 0.0000 | |
| 113 | W | A | 0.0000 | |
| 114 | I | A | 0.0000 | |
| 115 | V | A | 0.1954 | |
| 116 | G | A | 0.0000 | |
| 117 | G | A | -0.6115 | |
| 118 | S | A | -0.4467 | |
| 119 | S | A | -0.9166 | |
| 120 | V | A | 0.0000 | |
| 121 | Y | A | 0.0000 | |
| 122 | K | A | -2.8172 | |
| 123 | E | A | -2.5402 | |
| 124 | A | A | 0.0000 | |
| 125 | M | A | 0.0000 | |
| 126 | N | A | -2.3985 | |
| 127 | H | A | -2.0353 | |
| 128 | P | A | -1.7823 | |
| 129 | G | A | -1.8460 | |
| 130 | H | A | -1.9425 | |
| 131 | L | A | 0.0000 | |
| 132 | K | A | -0.7267 | |
| 133 | L | A | 0.0000 | |
| 134 | F | A | 0.0000 | |
| 135 | V | A | 0.0000 | |
| 136 | T | A | 0.0000 | |
| 137 | R | A | -0.7789 | |
| 138 | I | A | 0.0000 | |
| 139 | M | A | -1.3422 | |
| 140 | Q | A | -1.9254 | |
| 141 | D | A | -2.8006 | |
| 142 | F | A | -1.9434 | |
| 143 | E | A | -2.6237 | |
| 144 | S | A | -2.0323 | |
| 145 | D | A | -2.3686 | |
| 146 | T | A | -0.5418 | |
| 147 | F | A | 0.5902 | |
| 148 | F | A | 0.0000 | |
| 149 | P | A | -1.1760 | |
| 150 | E | A | -1.7255 | |
| 151 | I | A | -1.3429 | |
| 152 | D | A | -1.4071 | |
| 153 | L | A | -0.4892 | |
| 154 | E | A | -2.1001 | |
| 155 | K | A | -2.6565 | |
| 156 | Y | A | 0.0000 | |
| 157 | K | A | -1.6296 | |
| 158 | L | A | 0.3352 | |
| 159 | L | A | -0.3372 | |
| 160 | P | A | -0.8739 | |
| 161 | E | A | -1.4160 | |
| 162 | Y | A | -0.5202 | |
| 163 | P | A | -0.4772 | |
| 164 | G | A | -0.5150 | |
| 165 | V | A | 0.0000 | |
| 166 | L | A | 0.6495 | |
| 167 | S | A | -0.6717 | |
| 168 | D | A | -0.9897 | |
| 169 | V | A | -0.3792 | |
| 170 | Q | A | -1.4299 | |
| 171 | E | A | -2.8483 | |
| 172 | E | A | -2.7666 | |
| 173 | K | A | -2.4661 | |
| 174 | G | A | -1.9722 | |
| 175 | I | A | 0.0000 | |
| 176 | K | A | -2.2609 | |
| 177 | Y | A | 0.0000 | |
| 178 | K | A | -0.9059 | |
| 179 | F | A | -0.2421 | |
| 180 | E | A | -0.2486 | |
| 181 | V | A | 0.0000 | |
| 182 | Y | A | 0.0000 | |
| 183 | E | A | -1.2237 | |
| 184 | K | A | 0.0000 | |
| 185 | N | A | -3.0388 | |
| 186 | D | A | -3.0529 |