| Chain sequence(s) |
A: QCIQPGTGYNNGYFYSYWNDGHGGVTYCNGPGGQFSVNWSNSGNFVGGKGWQPGTKNKVINFSGSYNPNGNSYLSVYGWTRNPLIEYYIVENFGTYNPSTGATKLGEVTSDGSVYDIYQTQRVNQPSIIGTATFYQYWSVRRNHRSSGTVNTANHFNAWAQLGLTLGTMDYQIVAVEGYFSSGSADITVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:02)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:02)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:02)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:02)
[INFO] FoldX: Starting FoldX energy minimization (00:00:03)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:02:25)
[INFO] Main: Simulation completed successfully. (00:02:27)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 1 | Q | A | -0.7281 | |
| 2 | C | A | 0.2231 | |
| 3 | I | A | 0.0021 | |
| 4 | Q | A | -0.8049 | |
| 5 | P | A | -0.6543 | |
| 6 | G | A | -0.4338 | |
| 7 | T | A | 0.0385 | |
| 8 | G | A | 0.4516 | |
| 9 | Y | A | 0.8478 | |
| 10 | N | A | -0.4715 | |
| 11 | N | A | -1.3975 | |
| 12 | G | A | -0.7405 | |
| 13 | Y | A | -0.1749 | |
| 14 | F | A | 0.0000 | |
| 15 | Y | A | 0.2604 | |
| 16 | S | A | 0.0000 | |
| 17 | Y | A | 0.0000 | |
| 18 | W | A | -0.1171 | |
| 19 | N | A | -0.9184 | |
| 20 | D | A | -1.4148 | |
| 21 | G | A | -1.5435 | |
| 22 | H | A | -1.7900 | |
| 23 | G | A | -1.6123 | |
| 24 | G | A | -1.1998 | |
| 25 | V | A | -1.0968 | |
| 26 | T | A | -0.4199 | |
| 27 | Y | A | 0.0000 | |
| 28 | C | A | -0.2471 | |
| 29 | N | A | 0.0000 | |
| 30 | G | A | -0.8627 | |
| 31 | P | A | -1.0301 | |
| 32 | G | A | -1.0588 | |
| 33 | G | A | 0.0000 | |
| 34 | Q | A | -0.9172 | |
| 35 | F | A | 0.0000 | |
| 36 | S | A | -0.8123 | |
| 37 | V | A | 0.0000 | |
| 38 | N | A | -1.5489 | |
| 39 | W | A | 0.0000 | |
| 40 | S | A | -1.1726 | |
| 41 | N | A | -1.1655 | |
| 42 | S | A | 0.0000 | |
| 43 | G | A | 0.0000 | |
| 44 | N | A | -0.1075 | |
| 45 | F | A | 0.0000 | |
| 46 | V | A | 0.2864 | |
| 47 | G | A | 0.0000 | |
| 48 | G | A | 0.0000 | |
| 49 | K | A | 0.0000 | |
| 50 | G | A | 0.0000 | |
| 51 | W | A | 0.0310 | |
| 52 | Q | A | -0.2803 | |
| 53 | P | A | -0.4510 | |
| 54 | G | A | 0.0000 | |
| 55 | T | A | -0.9242 | |
| 56 | K | A | -1.7584 | |
| 57 | N | A | -1.8633 | |
| 58 | K | A | -0.7335 | |
| 59 | V | A | 0.3830 | |
| 60 | I | A | 0.0000 | |
| 61 | N | A | -0.6797 | |
| 62 | F | A | 0.0000 | |
| 63 | S | A | -0.7815 | |
| 64 | G | A | -0.8202 | |
| 65 | S | A | -0.9826 | |
| 66 | Y | A | -1.0866 | |
| 67 | N | A | -1.8705 | |
| 68 | P | A | -1.5613 | |
| 69 | N | A | -1.7415 | |
| 70 | G | A | -0.5766 | |
| 71 | N | A | 0.1704 | |
| 72 | S | A | 0.0000 | |
| 73 | Y | A | 0.1575 | |
| 74 | L | A | 0.0000 | |
| 75 | S | A | 0.0000 | |
| 76 | V | A | 0.0000 | |
| 77 | Y | A | 0.0000 | |
| 78 | G | A | 0.0000 | |
| 79 | W | A | 0.0000 | |
| 80 | T | A | 0.0000 | |
| 81 | R | A | -1.6797 | |
| 82 | N | A | -1.9923 | |
| 83 | P | A | -1.2295 | |
| 84 | L | A | -0.3929 | |
| 85 | I | A | 0.0000 | |
| 86 | E | A | 0.0000 | |
| 87 | Y | A | 0.0000 | |
| 88 | Y | A | 0.0000 | |
| 89 | I | A | 0.0000 | |
| 90 | V | A | 0.0000 | |
| 91 | E | A | 0.0000 | |
| 92 | N | A | -1.0436 | |
| 93 | F | A | -0.3372 | |
| 94 | G | A | -0.6695 | |
| 95 | T | A | -0.2692 | |
| 96 | Y | A | 0.3349 | |
| 97 | N | A | -0.2900 | |
| 98 | P | A | -0.1658 | |
| 99 | S | A | 0.0000 | |
| 100 | T | A | -0.5190 | |
| 101 | G | A | -0.8045 | |
| 102 | A | A | -0.8225 | |
| 103 | T | A | -1.0096 | |
| 104 | K | A | -1.8582 | |
| 105 | L | A | -0.6336 | |
| 106 | G | A | -1.1653 | |
| 107 | E | A | -1.7989 | |
| 108 | V | A | -0.9371 | |
| 109 | T | A | -0.5089 | |
| 110 | S | A | 0.0000 | |
| 111 | D | A | -0.8728 | |
| 112 | G | A | -0.8674 | |
| 113 | S | A | 0.0000 | |
| 114 | V | A | -0.9003 | |
| 115 | Y | A | 0.0000 | |
| 116 | D | A | -1.3470 | |
| 117 | I | A | 0.0000 | |
| 118 | Y | A | -0.8537 | |
| 119 | Q | A | -0.5815 | |
| 120 | T | A | -0.5740 | |
| 121 | Q | A | -0.6527 | |
| 122 | R | A | -0.3445 | |
| 123 | V | A | 0.6000 | |
| 124 | N | A | -0.9445 | |
| 125 | Q | A | -0.8903 | |
| 126 | P | A | -0.2340 | |
| 127 | S | A | 0.4059 | |
| 128 | I | A | 1.2862 | |
| 129 | I | A | 1.9446 | |
| 130 | G | A | 0.4964 | |
| 131 | T | A | -0.0805 | |
| 132 | A | A | 0.0991 | |
| 133 | T | A | -0.1085 | |
| 134 | F | A | 0.0000 | |
| 135 | Y | A | 0.3489 | |
| 136 | Q | A | 0.0000 | |
| 137 | Y | A | 0.0000 | |
| 138 | W | A | 0.0000 | |
| 139 | S | A | 0.0000 | |
| 140 | V | A | 0.0000 | |
| 141 | R | A | 0.0000 | |
| 142 | R | A | -2.5143 | |
| 143 | N | A | -2.5691 | |
| 144 | H | A | -2.0687 | |
| 145 | R | A | -1.3279 | |
| 146 | S | A | -0.8018 | |
| 147 | S | A | -0.6912 | |
| 148 | G | A | -0.6769 | |
| 149 | T | A | -0.4067 | |
| 150 | V | A | 0.0000 | |
| 151 | N | A | -0.6019 | |
| 152 | T | A | 0.0000 | |
| 153 | A | A | -1.3713 | |
| 154 | N | A | -1.2920 | |
| 155 | H | A | 0.0000 | |
| 156 | F | A | 0.0000 | |
| 157 | N | A | -1.9352 | |
| 158 | A | A | -1.3423 | |
| 159 | W | A | 0.0000 | |
| 160 | A | A | -0.9298 | |
| 161 | Q | A | -1.3602 | |
| 162 | L | A | -0.4075 | |
| 163 | G | A | -0.5896 | |
| 164 | L | A | 0.0000 | |
| 165 | T | A | -0.5121 | |
| 166 | L | A | -0.6490 | |
| 167 | G | A | -1.0753 | |
| 168 | T | A | -0.9845 | |
| 169 | M | A | -0.7383 | |
| 170 | D | A | 0.0000 | |
| 171 | Y | A | 0.0000 | |
| 172 | Q | A | 0.0000 | |
| 173 | I | A | 0.0000 | |
| 174 | V | A | 0.0000 | |
| 175 | A | A | 0.0000 | |
| 176 | V | A | 0.0000 | |
| 177 | E | A | 0.0000 | |
| 178 | G | A | 0.0000 | |
| 179 | Y | A | 1.5150 | |
| 180 | F | A | 1.5512 | |
| 181 | S | A | 0.0000 | |
| 182 | S | A | -1.0276 | |
| 183 | G | A | -1.5745 | |
| 184 | S | A | -1.4321 | |
| 185 | A | A | 0.0000 | |
| 186 | D | A | -1.3825 | |
| 187 | I | A | 0.0000 | |
| 188 | T | A | -0.7738 | |
| 189 | V | A | 0.0000 | |
| 190 | S | A | -0.3557 |