Project name: test_01

Chain sequence(s)	A: RIESAGGVVMWAGTWRVGGVLAMSR
Selected Chain(s)	A
Distance of aggregation	10 Å
FoldX usage	Yes
pH calculations	Yes
alphaCutter usage	No
Dynamic mode	No
Automated mutations	No

Simulation log

[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[WARNING]    PDB-Info: The input structure is likely a peptide. Results may be inaccurate.         (00:00:01)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:01)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:00:14)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/4deb12e8edeefff/tmp/folded.pdb                (00:00:14)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:33)

• Minimal score value: -2.4477
• Maximal score value: 2.1019
• Average score: 0.3421
• Total score value: 8.5531

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index	residue name	chain	Aggrescan4D score	mutation
1	R	A	-2.4477
2	I	A	-0.7750
3	E	A	-1.8747
4	S	A	-1.6848
5	A	A	-0.6359
6	G	A	-0.6226
7	G	A	0.4180
8	V	A	1.7490
9	V	A	2.1019
10	M	A	1.8075
11	W	A	1.5703
12	A	A	0.4901
13	G	A	-0.1082
14	T	A	0.3412
15	W	A	1.2028
16	R	A	0.2053
17	V	A	1.6004
18	G	A	1.0066
19	G	A	0.9825
20	V	A	2.0994
21	L	A	1.5041
22	A	A	0.8941
23	M	A	0.8248
24	S	A	-0.4688
25	R	A	-1.6272

Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is likely a peptide. Results may be inaccurate. The input structure is partially or entirely disordered. Average score is recommended for pH analysis.

pH	Average A4D Score	Max A4D Score
4.0	0.4204	4.5605
4.5	0.3726	4.5605
5.0	0.3155	4.5605
5.5	0.2582	4.5605
6.0	0.2096	4.5605
6.5	0.1777	4.5605
7.0	0.1623	4.5605
7.5	0.1564	4.5605
8.0	0.1544	4.5605
8.5	0.1538	4.5605
9.0	0.1536	4.5605