Project name: 4e02d73e8e9490f

Status: done

Started: 2026-05-13 10:36:25
Chain sequence(s) A: FDIDMVFSWVDIDELKYALRSVNMFAPWIRRIFIATDSTPPPWLAEHPKITIVRAEDHFSDRSALPTYNSHAVESQLHHIPGLSEHFLYSNDDMFFGRPLKASMFFSPGGVTRFIELEHTAVPLRKSVLIEMEREFPEEFARTAASPFRSDTDISVTNSFYHYYALMTGRAVPQEKAKVLYVDTTSYAGLRLLPKLRKHRGYDFFCLNDGFPEVPAAQRAERVVSFLERYFPIPAPWEK
B: FDIDMVFSWVDIDELKYALRSVNMFAPWIRRIFIATDSTPPPWLAEHPKITIVRAEDHFSDRSALPTYNSHAVESQLHHIPGLSEHFLYSNDDMFFGRPLKASMFFSPGGVTRFIEAENAARVNRQLLFDRFGQVITRHLEHTAVPLRKSVLIEMEREFPEEFARTAASPFRSDTDISVTNSFYHYYALMTGRAVPQEKAKVLYVDTTSYAGLRLLPKLRKHRGYDFFCLNDGSFPEVPAAQRAERVVSFLERYFPIPAPWEK
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
alphaCutter usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       PDB-Info: The input structure is globular. Max score is recommended for pH analysis.  (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:02)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:04:53)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/4e02d73e8e9490f/tmp/folded.pdb                (00:04:53)
[INFO]       Main:     Simulation completed successfully.                                          (00:07:41)
Show buried residues

Minimal score value
-3.7378
Maximal score value
1.5813
Average score
-0.6627
Total score value
-332.6925

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
201 F A 1.0614
202 D A -0.9559
203 I A 0.0000
204 D A 0.0000
205 M A 0.0000
206 V A 0.0000
207 F A 0.0000
208 S A 0.0000
209 W A 0.0418
210 V A 0.6316
211 D A -1.3373
243 I A -0.4149
244 D A -1.4527
245 E A -0.9805
246 L A 0.0000
247 K A -0.7715
248 Y A 0.0000
249 A A 0.0000
250 L A 0.0000
251 R A 0.0000
252 S A 0.0000
253 V A 0.0000
254 N A -0.2198
255 M A -0.0714
256 F A 0.0000
257 A A 0.0000
258 P A -0.5582
259 W A -0.6496
260 I A 0.0000
261 R A -1.4833
262 R A -1.2708
263 I A 0.0000
264 F A 0.0000
265 I A 0.0000
266 A A 0.0000
267 T A 0.0000
268 D A -1.9340
269 S A -0.9759
270 T A -0.6236
271 P A -0.6023
272 P A 0.0000
273 P A -0.5174
274 W A -0.8079
275 L A 0.0000
276 A A -1.6839
277 E A -2.2602
278 H A -1.5419
279 P A -0.9596
280 K A -1.1137
281 I A 0.0000
282 T A -0.3841
283 I A -0.3291
284 V A 0.0000
285 R A -2.2442
286 A A 0.0000
287 E A -3.7378
288 D A -3.0827
289 H A 0.0000
290 F A -2.0064
291 S A -1.9562
292 D A -2.9140
293 R A -3.3387
294 S A -1.6302
295 A A 0.0000
296 L A -1.0705
297 P A -0.6859
298 T A 0.0000
299 Y A 1.5264
300 N A 0.0000
301 S A 0.2530
302 H A -0.3414
303 A A 0.0000
304 V A 0.1610
305 E A -0.2710
306 S A 0.0000
307 Q A 0.0000
308 L A 0.0000
309 H A 0.0000
310 H A -0.7356
311 I A 0.0000
312 P A -0.9151
313 G A -0.7897
314 L A 0.0000
315 S A -0.8786
316 E A -0.8721
317 H A 0.0000
318 F A 0.0000
319 L A 0.0000
320 Y A 0.0000
321 S A 0.0000
322 N A -0.5274
323 D A -0.6564
324 D A -1.0804
325 M A 0.0000
326 F A 0.0000
327 F A 0.0000
328 G A 0.0000
329 R A -1.7844
330 P A -1.3141
331 L A 0.0000
332 K A -1.9149
333 A A -0.8684
334 S A -0.7211
335 M A 0.0000
336 F A 0.0000
337 F A 0.0000
338 S A 0.0000
339 P A 0.0763
340 G A 0.0160
341 G A 0.0000
342 V A 0.0000
343 T A 0.0000
344 R A 0.0000
345 F A 0.0000
346 I A 0.0000
347 E A -1.7259
387 L A -0.5855
388 E A -0.8912
389 H A -0.5718
390 T A 0.0000
391 A A 0.0000
392 V A 0.0000
393 P A 0.0000
394 L A 0.0000
395 R A -0.5926
396 K A -0.5791
397 S A -0.2535
398 V A 0.0000
399 L A 0.0000
400 I A -0.2397
401 E A -1.1783
402 M A 0.0000
403 E A -1.8189
404 R A -2.8722
405 E A -2.9148
406 F A -1.9075
407 P A -2.4844
408 E A -2.8545
409 E A -2.3627
410 F A 0.0000
411 A A -1.9522
412 R A -2.5746
413 T A 0.0000
414 A A 0.0000
415 A A -1.0800
416 S A -0.2234
417 P A 0.6359
418 F A 1.1429
419 R A -1.2096
420 S A -1.4356
421 D A -2.0821
422 T A -1.7018
423 D A -1.4354
424 I A -0.7281
425 S A -0.5128
426 V A 0.0000
427 T A 0.0000
428 N A -0.6784
429 S A -0.1443
430 F A 0.5363
431 Y A 0.0000
432 H A 0.0000
433 Y A 1.4330
434 Y A 0.0000
435 A A 0.0000
436 L A 0.7414
437 M A 0.7640
438 T A 0.2672
439 G A -0.1991
440 R A -0.2477
441 A A 0.0000
442 V A 0.0000
443 P A -0.6613
444 Q A 0.0000
445 E A -2.1695
446 K A -2.3414
447 A A -1.6822
448 K A -1.8524
449 V A -0.3841
450 L A 0.1247
451 Y A 0.5438
452 V A 0.0000
453 D A -1.4459
454 T A 0.0000
455 T A 0.0000
456 S A -1.0976
457 Y A -0.5315
458 A A -0.4244
459 G A 0.0000
460 L A 0.0000
461 R A -2.0941
462 L A -1.0618
463 L A 0.0000
464 P A -2.2609
465 K A -3.0172
466 L A 0.0000
467 R A -2.6071
468 K A -3.1803
469 H A -2.7666
470 R A -2.3385
471 G A -1.5992
472 Y A -1.0487
473 D A -1.2651
474 F A 0.0000
475 F A 0.0000
476 C A 0.0000
477 L A 0.0000
478 N A -1.6703
479 D A -2.2665
480 G A -1.3423
482 F A 0.9783
483 P A -0.7975
484 E A -1.5692
485 V A 0.0000
486 P A -0.8425
487 A A -0.7203
488 A A -0.8227
489 Q A -1.3578
490 R A -1.6191
491 A A -1.2997
492 E A -2.3479
493 R A -2.3521
494 V A 0.0000
495 V A -1.1778
496 S A -1.5456
497 F A 0.0000
498 L A 0.0000
499 E A -1.7254
500 R A -2.2695
501 Y A 0.0000
502 F A 0.0000
503 P A -0.4652
504 I A 0.9413
505 P A -0.0417
506 A A 0.0000
507 P A -0.7828
508 W A 0.0000
509 E A -1.4861
510 K A -2.1504
201 F B 0.9955
202 D B -0.8662
203 I B 0.0000
204 D B 0.0000
205 M B 0.0000
206 V B 0.0000
207 F B 0.0000
208 S B 0.0347
209 W B 0.0037
210 V B 0.6290
211 D B -1.3370
243 I B -0.3615
244 D B -1.4106
245 E B -1.0283
246 L B 0.0000
247 K B -0.8890
248 Y B 0.0000
249 A B 0.0000
250 L B 0.0000
251 R B 0.0000
252 S B 0.0000
253 V B 0.0000
254 N B -0.1709
255 M B 0.0165
256 F B 0.0000
257 A B 0.0000
258 P B -0.5109
259 W B -0.5247
260 I B 0.0000
261 R B -1.2023
262 R B -1.3623
263 I B 0.0000
264 F B 0.0000
265 I B 0.0000
266 A B 0.0000
267 T B 0.0000
268 D B -1.8494
269 S B -0.9829
270 T B -0.6286
271 P B -0.3793
272 P B 0.0000
273 P B -0.4674
274 W B -0.7346
275 L B -0.9417
276 A B -1.5808
277 E B -2.2438
278 H B -1.6100
279 P B -1.1657
280 K B -1.4354
281 I B 0.0000
282 T B -0.4538
283 I B -0.2757
284 V B 0.0000
285 R B -1.9323
286 A B 0.0000
287 E B -3.1705
288 D B -2.8131
289 H B 0.0000
290 F B 0.0000
291 S B -1.8136
292 D B -2.5303
293 R B -3.1801
294 S B -1.6799
295 A B -1.3515
296 L B -0.8387
297 P B -0.5859
298 T B 0.0000
299 Y B 1.5813
300 N B 0.0000
301 S B 0.1167
302 H B -0.3192
303 A B 0.0000
304 V B 0.1962
305 E B -0.2853
306 S B 0.0000
307 Q B 0.0000
308 L B 0.0000
309 H B 0.0000
310 H B -0.6377
311 I B 0.0000
312 P B -0.8712
313 G B -0.7585
314 L B 0.0000
315 S B -0.8757
316 E B -0.8817
317 H B -0.5679
318 F B 0.0000
319 L B 0.0000
320 Y B 0.0000
321 S B 0.0000
322 N B -0.5141
323 D B -0.7873
324 D B -1.3910
325 M B 0.0000
326 F B 0.0000
327 F B 0.0000
328 G B 0.0000
329 R B -1.5796
330 P B -1.1727
331 L B 0.0000
332 K B -1.8761
333 A B -0.8486
334 S B -0.7508
335 M B -0.8184
336 F B 0.0000
337 F B 0.0000
338 S B 0.0000
339 P B 0.2747
340 G B 0.2847
341 G B 0.0000
342 V B 0.0000
343 T B 0.0000
344 R B 0.0000
345 F B 0.0000
346 I B -1.0421
347 E B -1.7205
348 A B -1.0936
365 E B -2.7790
366 N B -2.3234
367 A B -2.3833
368 A B -2.1265
369 R B -3.0139
370 V B 0.0000
371 N B 0.0000
372 R B -1.2051
373 Q B -1.8560
374 L B -1.1520
375 L B 0.0000
376 F B -0.9148
377 D B -2.3700
378 R B -2.2589
379 F B -0.9433
380 G B -0.9470
381 Q B -1.0202
382 V B 0.0000
383 I B 1.1905
384 T B 0.0000
385 R B -2.3036
386 H B -2.5757
387 L B 0.0000
388 E B -0.9880
389 H B -0.6754
390 T B 0.0000
391 A B 0.0000
392 V B 0.0000
393 P B 0.0000
394 L B 0.0000
395 R B -0.5957
396 K B -0.5250
397 S B -0.2071
398 V B 0.0000
399 L B 0.0000
400 I B -0.0187
401 E B -1.0631
402 M B 0.0000
403 E B -1.8173
404 R B -2.8097
405 E B -2.6463
406 F B 0.0000
407 P B -2.2275
408 E B -2.6982
409 E B -1.6630
410 F B 0.0000
411 A B -1.4349
412 R B -1.4757
413 T B 0.0000
414 A B 0.0000
415 A B -0.5726
416 S B 0.0855
417 P B 0.8165
418 F B 1.1599
419 R B -1.1800
420 S B -1.4448
421 D B -2.3249
422 T B -1.4720
423 D B 0.0000
424 I B 0.0000
425 S B -1.0057
426 V B 0.0000
427 T B 0.0000
428 N B -1.9410
429 S B 0.0000
430 F B 0.0000
431 Y B 0.0000
432 H B 0.0000
433 Y B 0.0000
434 Y B 0.0000
435 A B 0.0000
436 L B 0.0000
437 M B -0.1261
438 T B -0.0765
439 G B -0.3516
440 R B -0.5094
441 A B 0.0000
442 V B 0.0000
443 P B -0.6222
444 Q B 0.0000
445 E B -2.4640
446 K B -2.8417
447 A B -1.8278
448 K B -1.9695
449 V B -0.3938
450 L B 0.3831
451 Y B 0.9323
452 V B 0.0000
453 D B -1.1881
454 T B 0.0000
455 T B -1.1588
456 S B -0.9781
457 Y B -0.1262
458 A B -0.4237
459 G B -0.5403
460 L B 0.0000
461 R B -1.8778
462 L B -1.0605
463 L B 0.0000
464 P B -2.0284
465 K B -2.8963
466 L B 0.0000
467 R B -2.7448
468 K B -3.2205
469 H B -2.7761
470 R B -2.3797
471 G B -1.6869
472 Y B -0.9714
473 D B 0.0000
474 F B 0.0000
475 F B 0.0000
476 C B 0.0000
477 L B 0.0000
478 N B -1.7408
479 D B -2.2600
480 G B -1.1258
481 S B 0.0246
482 F B 1.0616
483 P B -0.5074
484 E B -1.3628
485 V B 0.0000
486 P B -0.5761
487 A B -0.7675
488 A B -0.7883
489 Q B -1.4564
490 R B 0.0000
491 A B -1.1272
492 E B -2.1229
493 R B -1.5424
494 V B 0.0000
495 V B -1.1749
496 S B -1.3997
497 F B 0.0000
498 L B 0.0000
499 E B -1.9747
500 R B -2.3983
501 Y B 0.0000
502 F B 0.0000
503 P B -0.5772
504 I B 0.9819
505 P B -0.0399
506 A B 0.0000
507 P B -0.8144
508 W B 0.0000
509 E B -1.4308
510 K B -2.0934
Download PDB file
View in 3Dmol

Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is globular. Max score is recommended for pH analysis.

pH
Average A4D Score
Max A4D Score
4.0 -0.3823 4.8935 View CSV PDB
4.5 -0.45 4.7983 View CSV PDB
5.0 -0.5316 4.6609 View CSV PDB
5.5 -0.6143 4.4992 View CSV PDB
6.0 -0.6857 4.3325 View CSV PDB
6.5 -0.7374 4.1779 View CSV PDB
7.0 -0.7687 4.0509 View CSV PDB
7.5 -0.785 3.9548 View CSV PDB
8.0 -0.7919 3.8794 View CSV PDB
8.5 -0.7905 3.8167 View CSV PDB
9.0 -0.7793 3.7675 View CSV PDB