Project name: mi2699_6T13_monomer_conf2

Status: done

Started: 2026-05-29 17:06:22
Chain sequence(s) A: ARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLWHRQ
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
alphaCutter usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       PDB-Info: The input structure is globular. Max score is recommended for pH analysis.  (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:02)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:05:06)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/55d3780f3038141/tmp/folded.pdb                (00:05:06)
[INFO]       Main:     Simulation completed successfully.                                          (00:08:51)
Show buried residues

Minimal score value
-3.1221
Maximal score value
2.4297
Average score
-0.5261
Total score value
-261.4755

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
1 A A -1.7710
2 R A -1.9362
3 P A -1.2497
4 C A -0.5060
5 I A 0.2288
6 P A -0.4560
7 K A -0.7416
8 S A -0.1525
9 F A 0.5801
10 G A 0.0600
11 Y A 0.4446
12 S A -0.2921
13 S A 0.0000
14 V A -0.1400
15 V A 0.0000
16 C A 0.0000
17 V A 0.2009
18 C A 0.0000
19 N A -0.6266
20 A A -0.3702
21 T A -0.0076
22 Y A 0.1176
23 C A 0.0000
24 D A 0.0000
25 S A -1.3676
26 F A -1.8774
27 D A -2.5674
28 P A -1.7555
29 P A -0.7070
30 T A 0.5093
31 F A 1.8364
32 P A 0.0000
33 A A 1.1516
34 L A 1.2125
35 G A 0.4662
36 T A 0.3934
37 F A 0.0000
38 S A 0.0000
39 R A -0.0482
40 Y A 0.0000
41 E A -0.9634
42 S A -1.4126
43 T A -1.6855
44 R A -1.8203
45 S A -1.3495
46 G A -1.2721
47 R A -2.5858
48 R A 0.0000
49 M A -1.3233
50 E A -1.8482
51 L A 0.0150
52 S A 0.1038
53 M A 0.6381
54 G A -0.0991
55 P A -0.1590
56 I A -0.0338
57 Q A -1.0247
58 A A -0.7287
59 N A -1.6363
60 H A -1.2179
61 T A -0.6365
62 G A -0.8434
63 T A -0.3749
64 G A -0.4535
65 L A 0.0000
66 L A -0.2257
67 L A 0.0000
68 T A 0.2220
69 L A 0.0000
70 Q A -1.3499
71 P A -1.9216
72 E A -2.9779
73 Q A -2.8862
74 K A -2.8173
75 F A -0.8568
76 Q A -1.1031
77 K A -2.3040
78 V A 0.0000
79 K A -1.1799
80 G A 0.0000
81 F A 0.0000
82 G A 0.0000
83 G A 0.0000
84 A A 0.0000
85 M A 0.0000
86 T A 0.0000
87 D A 0.0000
88 A A 0.0000
89 A A 0.0000
90 A A 0.0000
91 L A 0.4926
92 N A 0.0000
93 I A 0.0000
94 L A 0.4469
95 A A 0.1522
96 L A 0.0000
97 S A -0.5036
98 P A -0.4147
99 P A -0.4708
100 A A 0.0000
101 Q A -0.5861
102 N A -0.6885
103 L A -0.3445
104 L A 0.0000
105 L A 0.0000
106 K A -1.2506
107 S A 0.0000
108 Y A 0.0000
109 F A 0.0000
110 S A 0.0000
111 E A -2.2601
112 E A -2.3307
113 G A 0.0000
114 I A 0.0000
115 G A 0.0000
116 Y A 0.0000
117 N A -0.6566
118 I A 0.0000
119 I A 0.0000
120 R A 0.0000
121 V A 0.0000
122 P A 0.0000
123 M A 0.0000
124 A A 0.0207
125 S A -0.4058
126 C A 0.0000
127 D A -0.9306
128 F A 0.0000
129 S A 0.0000
130 I A -0.0876
131 R A -1.4969
132 T A -0.7557
133 Y A -0.4874
134 T A -0.2527
135 Y A 0.0000
136 A A -1.3824
137 D A -2.3708
138 T A -1.6848
139 P A -1.5213
140 D A -2.0040
141 D A -1.5078
142 F A -0.1857
143 Q A -1.4603
144 L A 0.0000
145 H A -1.7250
146 N A -1.8205
147 F A -1.0687
148 S A -0.6223
149 L A -0.3074
150 P A -1.2090
151 E A -2.4689
152 E A -1.6491
153 D A 0.0000
154 T A -1.5246
155 K A -2.1934
156 L A -0.8876
157 K A 0.0000
158 I A 0.0000
159 P A -0.7591
160 L A 0.0000
161 I A 0.0000
162 H A -1.0568
163 R A -1.0972
164 A A 0.0000
165 L A -0.7255
166 Q A -1.4579
167 L A -1.1677
168 A A -1.3402
169 Q A -1.8096
170 R A -2.3660
171 P A -1.2648
172 V A -0.4751
173 S A -0.2711
174 L A 0.0000
175 L A 0.0000
176 A A 0.0000
177 S A 0.0000
178 P A 0.0000
179 W A -0.0278
180 T A -0.0053
181 S A 0.0000
182 P A 0.0000
183 T A -0.6003
184 W A -0.7722
185 L A 0.0000
186 K A 0.0000
187 T A -1.3343
188 N A -1.9100
189 G A -1.1128
190 A A -0.8606
191 V A -0.3191
192 N A -0.9288
193 G A -0.7552
194 K A -1.4949
195 G A -1.2637
196 S A -1.0025
197 L A 0.0000
198 K A -1.4495
199 G A -1.3882
200 Q A -1.9310
201 P A 0.0000
202 G A -1.6917
203 D A -1.4103
204 I A 0.3105
205 Y A -0.3095
206 H A 0.0000
207 Q A -0.6939
208 T A 0.0000
209 W A 0.0000
210 A A 0.0000
211 R A -1.2678
212 Y A 0.0000
213 F A 0.0000
214 V A -0.9827
215 K A -1.4257
216 F A 0.0000
217 L A 0.0000
218 D A -2.8175
219 A A -2.0249
220 Y A 0.0000
221 A A -2.6702
222 E A -3.1221
223 H A -2.4222
224 K A -2.9301
225 L A 0.0000
226 Q A -2.1615
227 F A 0.0000
228 W A -0.7205
229 A A 0.0000
230 V A 0.0000
231 T A 0.0000
232 A A 0.0000
233 E A 0.0000
234 N A -0.3060
235 E A -0.4904
236 P A 0.0000
237 S A 0.0280
238 A A 0.2767
239 G A 0.0000
240 L A 0.3889
241 L A 0.9172
242 S A -0.0092
243 G A 0.0001
244 Y A 0.8309
245 P A 0.2561
246 F A 0.7988
247 Q A -0.3615
248 C A 0.0000
249 L A 0.0000
250 G A 0.0000
251 F A 0.0000
252 T A -0.4195
253 P A 0.0000
254 E A -1.5670
255 H A -1.1894
256 Q A 0.0000
257 R A -1.5933
258 D A -1.8986
259 F A 0.0000
260 I A 0.0000
261 A A -1.9513
262 R A -2.6480
263 D A 0.0000
264 L A 0.0000
265 G A 0.0000
266 P A -0.8611
267 T A -1.0055
268 L A 0.0000
269 A A -1.1094
270 N A -1.5214
271 S A -1.3530
272 T A -1.0675
273 H A 0.0000
274 H A -1.9903
275 N A -2.0723
276 V A 0.0000
277 R A -1.4546
278 L A 0.0000
279 L A 0.0000
280 M A 0.0000
281 L A 0.0000
282 D A 0.0000
283 D A 0.0000
284 Q A 0.0000
285 R A 0.0000
286 L A 1.5225
287 L A 0.4779
288 L A 0.0000
289 P A -0.5821
290 H A -0.9250
291 W A -0.4523
292 A A 0.0000
293 K A -0.8836
294 V A -0.6170
295 V A 0.0000
296 L A -0.8529
297 T A -0.7326
298 D A -1.7843
299 P A -1.8113
300 E A -2.7927
301 A A 0.0000
302 A A -1.7377
303 K A -2.3180
304 Y A -1.2153
305 V A 0.0000
306 H A -1.2282
307 G A 0.0000
308 I A 0.0000
309 A A 0.0000
310 V A 0.0000
311 H A 0.0000
312 W A 0.4646
313 Y A 0.7447
314 L A 1.4716
315 D A 0.8817
316 F A 2.4297
317 L A 2.3583
318 A A 0.0000
319 P A -0.0414
320 A A -0.8460
321 K A -1.9463
322 A A -1.1033
323 T A 0.0000
324 L A 0.0000
325 G A -1.6412
326 E A -2.0308
327 T A 0.0000
328 H A -1.6639
329 R A -2.2429
330 L A -0.8710
331 F A -0.8705
332 P A -1.2027
333 N A -1.5592
334 T A 0.0000
335 M A -0.5656
336 L A 0.0000
337 F A 0.0000
338 A A 0.0000
339 S A 0.0000
340 E A 0.0000
341 A A 0.0000
342 C A 0.0000
343 V A 0.0000
344 G A 0.0000
345 S A -0.2601
346 K A 0.1061
347 F A 1.5117
348 W A 1.3520
349 E A -0.2852
350 Q A -1.1090
351 S A -1.2443
352 V A -0.8876
353 R A -0.9511
354 L A 0.0362
355 G A 0.0000
356 S A 0.0000
357 W A 0.0000
358 D A -1.9361
359 R A 0.0000
360 G A 0.0000
361 M A 0.0000
362 Q A -1.3285
363 Y A 0.0000
364 S A 0.0000
365 H A -1.1232
366 S A -0.6085
367 I A 0.0000
368 I A 0.0000
369 T A -0.2387
370 N A -0.0705
371 L A 0.0000
372 L A 0.0806
373 Y A -0.1634
374 H A -0.1438
375 V A 0.0000
376 V A 0.0000
377 G A 0.0000
378 W A 0.0000
379 T A 0.0000
380 D A 0.0000
381 W A 0.0000
382 N A 0.0000
383 L A 0.0000
384 A A 0.0000
385 L A 0.0000
386 N A -0.5880
387 P A -1.0011
388 E A -1.9745
389 G A 0.0000
390 G A 0.0000
391 P A -0.4486
392 N A 0.0000
393 W A -0.1533
394 V A -0.4335
395 R A -2.0920
396 N A -1.8627
397 F A -1.3883
398 V A 0.0000
399 D A 0.0000
400 S A 0.0000
401 P A 0.0000
402 I A 0.0000
403 I A 0.0000
404 V A 0.0000
405 D A -0.7284
406 I A 0.0753
407 T A -0.7319
408 K A -1.9707
409 D A -1.5998
410 T A 0.0000
411 F A 0.0000
412 Y A 0.0000
413 K A 0.0000
414 Q A 0.0000
415 P A 0.0000
416 M A 0.0000
417 F A 0.0000
418 Y A 0.0000
419 H A 0.0000
420 L A 0.0000
421 G A 0.0000
422 H A 0.0000
423 F A 0.0000
424 S A 0.0000
425 K A -0.4892
426 F A 0.0000
427 I A 0.0000
428 P A -1.2347
429 E A -1.9028
430 G A -1.5420
431 S A 0.0000
432 Q A -1.5702
433 R A -1.1721
434 V A 0.0000
435 G A 0.0000
436 L A 0.3805
437 V A 1.3898
438 A A -0.0377
439 S A -0.5410
440 Q A -1.6744
441 K A -2.6673
442 N A -2.3772
443 D A -2.6583
444 L A -1.7368
445 D A -1.6210
446 A A -0.1654
447 V A 0.0000
448 A A 0.0000
449 L A 0.0000
450 M A -0.8945
451 H A -1.2686
452 P A -1.6280
453 D A -2.2404
454 G A -1.4881
455 S A 0.0000
456 A A 0.0000
457 V A 0.0000
458 V A 0.0000
459 V A 0.0000
460 V A 0.0000
461 L A 0.0000
462 N A 0.0000
463 R A -1.9852
464 S A -1.7003
465 S A -1.5723
466 K A -2.7589
467 D A -2.5557
468 V A -1.1162
469 P A -0.6905
470 L A 0.0000
471 T A 0.0000
472 I A 0.0000
473 K A -0.7803
474 D A 0.0000
475 P A -0.3972
476 A A -0.2329
477 V A 0.1602
478 G A -0.4242
479 F A -0.6908
480 L A 0.0000
481 E A -1.2492
482 T A -0.1051
483 I A 0.1638
484 S A 0.0000
485 P A -1.0844
486 G A -1.2673
487 Y A -0.3717
488 S A -0.3558
489 I A 0.0000
490 H A 0.0000
491 T A 0.0000
492 Y A 0.0000
493 L A 0.3212
494 W A 0.0000
495 H A -0.2580
496 R A -0.9834
497 Q A -1.5270
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is globular. Max score is recommended for pH analysis.

pH
Average A4D Score
Max A4D Score
4.0 -0.276 5.8012 View CSV PDB
4.5 -0.3156 5.6938 View CSV PDB
5.0 -0.3631 5.5799 View CSV PDB
5.5 -0.4099 5.4636 View CSV PDB
6.0 -0.4474 5.3468 View CSV PDB
6.5 -0.4684 5.2301 View CSV PDB
7.0 -0.4728 5.1147 View CSV PDB
7.5 -0.4663 5.003 View CSV PDB
8.0 -0.4539 4.9019 View CSV PDB
8.5 -0.4366 4.8838 View CSV PDB
9.0 -0.4132 4.9625 View CSV PDB