| Chain sequence(s) |
A: MIVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASNLE
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:03)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:03)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:03)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:03)
[INFO] FoldX: Starting FoldX energy minimization (00:00:04)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:04:28)
[INFO] Main: Simulation completed successfully. (00:04:31)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 1 | M | A | 0.0000 | |
| 2 | I | A | 0.0000 | |
| 3 | V | A | -0.7754 | |
| 4 | G | A | -1.0699 | |
| 5 | G | A | -0.4674 | |
| 6 | Y | A | 0.6014 | |
| 7 | T | A | 0.3547 | |
| 8 | C | A | 0.0000 | |
| 9 | G | A | -0.1911 | |
| 10 | A | A | -0.4469 | |
| 11 | N | A | -0.8700 | |
| 12 | T | A | -0.5093 | |
| 13 | V | A | 0.0000 | |
| 14 | P | A | -0.5506 | |
| 15 | Y | A | 0.0000 | |
| 16 | Q | A | 0.0000 | |
| 17 | V | A | 0.0000 | |
| 18 | S | A | 0.0000 | |
| 19 | L | A | 0.0000 | |
| 20 | N | A | 0.0000 | |
| 21 | S | A | -0.3490 | |
| 22 | G | A | 0.0145 | |
| 23 | Y | A | 0.8992 | |
| 24 | H | A | 0.3147 | |
| 25 | F | A | 0.1089 | |
| 26 | C | A | 0.0000 | |
| 27 | G | A | 0.0000 | |
| 28 | G | A | 0.0000 | |
| 29 | S | A | 0.0000 | |
| 30 | L | A | 0.0000 | |
| 31 | I | A | -0.1129 | |
| 32 | N | A | -0.3589 | |
| 33 | S | A | -0.2177 | |
| 34 | Q | A | -0.6653 | |
| 35 | W | A | 0.0000 | |
| 36 | V | A | 0.0000 | |
| 37 | V | A | 0.0000 | |
| 38 | S | A | 0.0000 | |
| 39 | A | A | 0.0000 | |
| 40 | A | A | 0.0000 | |
| 41 | H | A | -0.2077 | |
| 42 | C | A | 0.0000 | |
| 43 | Y | A | 0.2928 | |
| 44 | K | A | -1.1969 | |
| 45 | S | A | -1.1023 | |
| 46 | G | A | -1.1341 | |
| 47 | I | A | 0.0000 | |
| 48 | Q | A | -0.6381 | |
| 49 | V | A | 0.0000 | |
| 50 | R | A | -0.1414 | |
| 51 | L | A | 0.0000 | |
| 52 | G | A | -0.9572 | |
| 53 | E | A | 0.0000 | |
| 54 | D | A | -0.6369 | |
| 55 | N | A | -0.3492 | |
| 56 | I | A | -0.1021 | |
| 57 | N | A | -0.3782 | |
| 58 | V | A | 1.3005 | |
| 59 | V | A | 1.2566 | |
| 60 | E | A | -0.8901 | |
| 61 | G | A | -0.8644 | |
| 62 | N | A | -1.4039 | |
| 63 | E | A | -0.6862 | |
| 64 | Q | A | -0.1671 | |
| 65 | F | A | 0.6985 | |
| 66 | I | A | -0.1161 | |
| 67 | S | A | -0.7837 | |
| 68 | A | A | -1.1525 | |
| 69 | S | A | -1.5413 | |
| 70 | K | A | -1.5219 | |
| 71 | S | A | -0.4602 | |
| 72 | I | A | 0.3574 | |
| 73 | V | A | 0.4955 | |
| 74 | H | A | -0.0608 | |
| 75 | P | A | -0.2928 | |
| 76 | S | A | -0.4902 | |
| 77 | Y | A | -0.5867 | |
| 78 | N | A | -1.3129 | |
| 79 | S | A | -1.2104 | |
| 80 | N | A | -1.5574 | |
| 81 | T | A | -1.0929 | |
| 82 | L | A | -0.7136 | |
| 83 | N | A | -0.8551 | |
| 84 | N | A | -0.6087 | |
| 85 | D | A | 0.0000 | |
| 86 | I | A | 0.0000 | |
| 87 | M | A | 0.0000 | |
| 88 | L | A | 0.0000 | |
| 89 | I | A | 0.0000 | |
| 90 | K | A | 0.0000 | |
| 91 | L | A | 0.0000 | |
| 92 | K | A | -2.1097 | |
| 93 | S | A | -1.1092 | |
| 94 | A | A | -0.4935 | |
| 95 | A | A | 0.0000 | |
| 96 | S | A | -0.0649 | |
| 97 | L | A | 0.3034 | |
| 98 | N | A | -1.0162 | |
| 99 | S | A | -0.9327 | |
| 100 | R | A | -1.2193 | |
| 101 | V | A | 0.0000 | |
| 102 | A | A | -0.3257 | |
| 103 | S | A | -0.1640 | |
| 104 | I | A | 0.0000 | |
| 105 | S | A | -0.3763 | |
| 106 | L | A | -0.2334 | |
| 107 | P | A | 0.0000 | |
| 108 | T | A | -0.0204 | |
| 109 | S | A | -0.0313 | |
| 110 | C | A | 0.2696 | |
| 111 | A | A | -0.1563 | |
| 112 | S | A | -0.4757 | |
| 113 | A | A | -0.6323 | |
| 114 | G | A | -0.7442 | |
| 115 | T | A | -0.8619 | |
| 116 | Q | A | -1.7269 | |
| 117 | C | A | 0.0000 | |
| 118 | L | A | -0.7738 | |
| 119 | I | A | 0.0000 | |
| 120 | S | A | 0.0000 | |
| 121 | G | A | 0.0000 | |
| 122 | W | A | 0.0000 | |
| 123 | G | A | 0.0000 | |
| 124 | N | A | 0.0000 | |
| 125 | T | A | -0.7043 | |
| 126 | K | A | -1.6510 | |
| 127 | S | A | -1.4803 | |
| 128 | S | A | -1.0680 | |
| 129 | G | A | -1.0458 | |
| 130 | T | A | -0.6341 | |
| 131 | S | A | -0.1853 | |
| 132 | Y | A | 0.5797 | |
| 133 | P | A | -0.1588 | |
| 134 | D | A | -0.9862 | |
| 135 | V | A | -0.2500 | |
| 136 | L | A | 0.0000 | |
| 137 | K | A | -0.1318 | |
| 138 | C | A | 0.0000 | |
| 139 | L | A | 0.0000 | |
| 140 | K | A | -1.9762 | |
| 141 | A | A | 0.0000 | |
| 142 | P | A | -0.9539 | |
| 143 | I | A | 0.0000 | |
| 144 | L | A | -0.6040 | |
| 145 | S | A | -1.2490 | |
| 146 | D | A | -2.3213 | |
| 147 | S | A | -1.6339 | |
| 148 | S | A | -1.2920 | |
| 149 | C | A | 0.0000 | |
| 150 | K | A | -2.4521 | |
| 151 | S | A | -1.7196 | |
| 152 | A | A | 0.0000 | |
| 153 | Y | A | 0.0000 | |
| 154 | P | A | -1.3299 | |
| 155 | G | A | -1.4165 | |
| 156 | Q | A | -1.6738 | |
| 157 | I | A | -1.2729 | |
| 158 | T | A | -0.8891 | |
| 159 | S | A | -0.6958 | |
| 160 | N | A | -0.6164 | |
| 161 | M | A | 0.0000 | |
| 162 | F | A | 0.0000 | |
| 163 | C | A | 0.0000 | |
| 164 | A | A | 0.0000 | |
| 165 | G | A | 0.0000 | |
| 166 | Y | A | -1.0091 | |
| 167 | L | A | -1.6970 | |
| 168 | E | A | -2.9188 | |
| 169 | G | A | -2.6298 | |
| 170 | G | A | -1.9561 | |
| 171 | K | A | -1.9193 | |
| 172 | D | A | 0.0000 | |
| 173 | S | A | 0.0000 | |
| 174 | C | A | -0.8761 | |
| 175 | Q | A | -1.2000 | |
| 176 | G | A | 0.0000 | |
| 177 | D | A | 0.0000 | |
| 178 | S | A | -0.2844 | |
| 179 | G | A | 0.0000 | |
| 180 | G | A | 0.0000 | |
| 181 | P | A | 0.0000 | |
| 182 | V | A | 0.0000 | |
| 183 | V | A | 0.0000 | |
| 184 | C | A | 0.0000 | |
| 185 | S | A | -0.8038 | |
| 186 | G | A | -0.8363 | |
| 187 | K | A | -0.8398 | |
| 188 | L | A | 0.0000 | |
| 189 | Q | A | 0.0000 | |
| 190 | G | A | 0.0000 | |
| 191 | I | A | 0.0000 | |
| 192 | V | A | 0.0000 | |
| 193 | S | A | 0.0000 | |
| 194 | W | A | -0.1662 | |
| 195 | G | A | -0.6723 | |
| 196 | S | A | -0.9880 | |
| 197 | G | A | -1.2186 | |
| 198 | C | A | -1.4606 | |
| 199 | A | A | -2.0983 | |
| 200 | Q | A | -2.7610 | |
| 201 | K | A | -3.5662 | |
| 202 | N | A | -2.7583 | |
| 203 | K | A | -2.1905 | |
| 204 | P | A | 0.0000 | |
| 205 | G | A | 0.0000 | |
| 206 | V | A | 0.0000 | |
| 207 | Y | A | 0.0000 | |
| 208 | T | A | 0.0000 | |
| 209 | K | A | -0.4816 | |
| 210 | V | A | 0.0000 | |
| 211 | C | A | -0.1887 | |
| 212 | N | A | -0.7082 | |
| 213 | Y | A | 0.0000 | |
| 214 | V | A | -0.4362 | |
| 215 | S | A | -0.8922 | |
| 216 | W | A | -0.8046 | |
| 217 | I | A | 0.0000 | |
| 218 | K | A | -1.9736 | |
| 219 | Q | A | -1.8900 | |
| 220 | T | A | 0.0000 | |
| 221 | I | A | -0.6461 | |
| 222 | A | A | -0.5853 | |
| 223 | S | A | -0.5956 | |
| 224 | N | A | -0.3251 | |
| 225 | L | A | 0.5618 | |
| 226 | E | A | -1.1368 |