Chain sequence(s) |
A: MEKEKKTESEQGKVNLEGLPTEDSPYVKYKDLEDYKQQGYGTQGHQEPKTGRGAGATEAPTLSGAAFSSKSQATATGATNHK
input PDB |
Selected Chain(s) | A |
Distance of aggregation | 10 Å |
FoldX usage | No |
pH calculations | No |
alphaCutter usage | No |
Dynamic mode | No |
Automated mutations | No |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:01) [INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:00:01) [INFO] Main: Simulation completed successfully. (00:00:01) |
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan4D score | mutation |
---|---|---|---|---|
1 | M | A | -0.4953 | |
2 | E | A | -2.7710 | |
3 | K | A | -3.8679 | |
4 | E | A | -4.2622 | |
5 | K | A | -4.3252 | |
6 | K | A | -3.8897 | |
7 | T | A | -2.7928 | |
8 | E | A | -3.4272 | |
9 | S | A | -2.6658 | |
10 | E | A | -3.4568 | |
11 | Q | A | -2.7475 | |
12 | G | A | -1.9511 | |
13 | K | A | -1.7012 | |
14 | V | A | 0.3469 | |
15 | N | A | -0.6180 | |
16 | L | A | 0.6292 | |
17 | E | A | -1.0599 | |
18 | G | A | -0.4318 | |
19 | L | A | 0.7032 | |
20 | P | A | -0.6653 | |
21 | T | A | -0.9100 | |
22 | E | A | -2.5396 | |
23 | D | A | -2.5871 | |
24 | S | A | -1.0238 | |
25 | P | A | -0.4867 | |
26 | Y | A | 0.8440 | |
27 | V | A | -0.2795 | |
28 | K | A | -1.9604 | |
29 | Y | A | -1.4213 | |
30 | K | A | -2.3690 | |
31 | D | A | -2.3143 | |
32 | L | A | -0.5606 | |
33 | E | A | -2.2156 | |
34 | D | A | -2.0522 | |
35 | Y | A | -1.0141 | |
36 | K | A | -1.2772 | |
37 | Q | A | -1.6337 | |
38 | Q | A | -1.7637 | |
39 | G | A | -0.7867 | |
40 | Y | A | 0.1873 | |
41 | G | A | -0.9764 | |
42 | T | A | -1.2961 | |
43 | Q | A | -2.0643 | |
44 | G | A | -2.1614 | |
45 | H | A | -2.7168 | |
46 | Q | A | -3.1569 | |
47 | E | A | -3.3072 | |
48 | P | A | -2.7533 | |
49 | K | A | -3.1036 | |
50 | T | A | -2.0881 | |
51 | G | A | -2.0334 | |
52 | R | A | -2.8344 | |
53 | G | A | -1.8450 | |
54 | A | A | -0.9424 | |
55 | G | A | -1.3410 | |
56 | A | A | -0.5023 | |
57 | T | A | -0.8851 | |
58 | E | A | -1.7572 | |
59 | A | A | -0.7219 | |
60 | P | A | -0.3747 | |
61 | T | A | 0.1957 | |
62 | L | A | 1.3667 | |
63 | S | A | 0.4872 | |
64 | G | A | 0.4049 | |
65 | A | A | 0.5665 | |
66 | A | A | 0.9314 | |
67 | F | A | 1.4687 | |
68 | S | A | -0.0531 | |
69 | S | A | -0.8154 | |
70 | K | A | -1.8201 | |
71 | S | A | -1.4311 | |
72 | Q | A | -1.8055 | |
73 | A | A | -0.8658 | |
74 | T | A | -0.4663 | |
75 | A | A | -0.2794 | |
76 | T | A | -0.2756 | |
77 | G | A | -0.6361 | |
78 | A | A | -0.6818 | |
79 | T | A | -1.2684 | |
80 | N | A | -2.2611 | |
81 | H | A | -2.4375 | |
82 | K | A | -2.5095 |