Chain sequence(s) |
A: MMKKKIRVEPGEVYFELDELSEENIRETLEEGVRLMGEENPLRITVQAVIPSRTVNRKESFEVLVRTKEEQEESIEELVKKLMEVKEKWKDEPEIIVEIRIEKVE
input PDB |
Selected Chain(s) | A |
Distance of aggregation | 10 Å |
FoldX usage | Yes |
pH calculations | No |
alphaCutter usage | No |
Dynamic mode | No |
Automated mutations | No |
Mutated residues | MS1A,VK8A,IR6A |
Energy difference between WT (input) and mutated protein (by FoldX) | 0.620037 kcal/mol |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:01) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01) [INFO] runJob: Creating pdb object from: input.pdb (00:00:01) [INFO] FoldX: Starting FoldX energy minimization (00:00:01) [INFO] FoldX: Building mutant model (00:01:17) [INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:01:42) [INFO] Main: Simulation completed successfully. (00:01:43) |
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan4D score | mutation |
---|---|---|---|---|
1 | S | A | -0.3181 | mutated: MS1A |
2 | M | A | -0.5830 | |
3 | K | A | -1.8747 | |
4 | K | A | -3.2314 | |
5 | K | A | -3.4524 | |
6 | R | A | -4.0288 | mutated: IR6A |
7 | R | A | -4.4312 | |
8 | K | A | -4.0459 | mutated: VK8A |
9 | E | A | -3.5796 | |
10 | P | A | -1.9721 | |
11 | G | A | -2.0664 | |
12 | E | A | -3.0828 | |
13 | V | A | 0.0000 | |
14 | Y | A | 0.0000 | |
15 | F | A | 0.0000 | |
16 | E | A | -2.6734 | |
17 | L | A | 0.0000 | |
18 | D | A | -2.3169 | |
19 | E | A | -2.7836 | |
20 | L | A | 0.0000 | |
21 | S | A | -2.1445 | |
22 | E | A | -2.7465 | |
23 | E | A | -3.1898 | |
24 | N | A | -2.9499 | |
25 | I | A | 0.0000 | |
26 | R | A | -3.1887 | |
27 | E | A | -3.4693 | |
28 | T | A | 0.0000 | |
29 | L | A | 0.0000 | |
30 | E | A | -3.0580 | |
31 | E | A | -2.6020 | |
32 | G | A | 0.0000 | |
33 | V | A | 0.0000 | |
34 | R | A | -2.8546 | |
35 | L | A | -1.5229 | |
36 | M | A | 0.0000 | |
37 | G | A | -2.2787 | |
38 | E | A | -3.9237 | |
39 | E | A | -3.4730 | |
40 | N | A | -2.7416 | |
41 | P | A | -2.3648 | |
42 | L | A | 0.0000 | |
43 | R | A | -1.7703 | |
44 | I | A | 0.0000 | |
45 | T | A | -1.5269 | |
46 | V | A | 0.0000 | |
47 | Q | A | -1.3920 | |
48 | A | A | 0.0000 | |
49 | V | A | -1.6396 | |
50 | I | A | 0.0000 | |
51 | P | A | -1.3968 | |
52 | S | A | -1.6379 | |
53 | R | A | -2.0709 | |
54 | T | A | -1.2895 | |
55 | V | A | -1.4937 | |
56 | N | A | -2.7238 | |
57 | R | A | -3.3122 | |
58 | K | A | -3.2133 | |
59 | E | A | -2.1438 | |
60 | S | A | -1.4148 | |
61 | F | A | -0.9834 | |
62 | E | A | -1.7646 | |
63 | V | A | -0.4896 | |
64 | L | A | -0.1415 | |
65 | V | A | 0.0000 | |
66 | R | A | -2.9229 | |
67 | T | A | -3.2731 | |
68 | K | A | -4.0823 | |
69 | E | A | -4.0977 | |
70 | E | A | -3.2785 | |
71 | Q | A | 0.0000 | |
72 | E | A | -4.4389 | |
73 | E | A | -4.1486 | |
74 | S | A | 0.0000 | |
75 | I | A | 0.0000 | |
76 | E | A | -3.1612 | |
77 | E | A | -3.2318 | |
78 | L | A | 0.0000 | |
79 | V | A | 0.0000 | |
80 | K | A | -3.0810 | |
81 | K | A | -2.5201 | |
82 | L | A | 0.0000 | |
83 | M | A | -2.9001 | |
84 | E | A | -3.8169 | |
85 | V | A | 0.0000 | |
86 | K | A | -3.9601 | |
87 | E | A | -4.5113 | |
88 | K | A | -4.1157 | |
89 | W | A | 0.0000 | |
90 | K | A | -4.4400 | |
91 | D | A | -3.6239 | |
92 | E | A | -2.6599 | |
93 | P | A | -1.6534 | |
94 | E | A | -2.0114 | |
95 | I | A | 0.0000 | |
96 | I | A | 0.0000 | |
97 | V | A | 0.0000 | |
98 | E | A | -1.4275 | |
99 | I | A | 0.0000 | |
100 | R | A | -2.6443 | |
101 | I | A | 0.0000 | |
102 | E | A | -2.5290 | |
103 | K | A | -1.9543 | |
104 | V | A | -1.7026 | |
105 | E | A | -2.0602 |