Project name: 6d6688d0a5fe10d [mutate: MS1A, IR6A, VK8A]

Status: done

Started: 2025-03-12 07:00:10
Chain sequence(s) A: MMKKKIRVEPGEVYFELDELSEENIRETLEEGVRLMGEENPLRITVQAVIPSRTVNRKESFEVLVRTKEEQEESIEELVKKLMEVKEKWKDEPEIIVEIRIEKVE
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations No
alphaCutter usage No
Dynamic mode No
Automated mutations No
Mutated residues MS1A,VK8A,IR6A
Energy difference between WT (input) and mutated protein (by FoldX) 0.620037 kcal/mol
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:01)
[INFO]       FoldX:    Building mutant model                                                       (00:01:17)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:01:42)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:43)
Show buried residues

Minimal score value
-4.5113
Maximal score value
0.0
Average score
-1.8819
Total score value
-197.5996

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
1 S A -0.3181 mutated: MS1A
2 M A -0.5830
3 K A -1.8747
4 K A -3.2314
5 K A -3.4524
6 R A -4.0288 mutated: IR6A
7 R A -4.4312
8 K A -4.0459 mutated: VK8A
9 E A -3.5796
10 P A -1.9721
11 G A -2.0664
12 E A -3.0828
13 V A 0.0000
14 Y A 0.0000
15 F A 0.0000
16 E A -2.6734
17 L A 0.0000
18 D A -2.3169
19 E A -2.7836
20 L A 0.0000
21 S A -2.1445
22 E A -2.7465
23 E A -3.1898
24 N A -2.9499
25 I A 0.0000
26 R A -3.1887
27 E A -3.4693
28 T A 0.0000
29 L A 0.0000
30 E A -3.0580
31 E A -2.6020
32 G A 0.0000
33 V A 0.0000
34 R A -2.8546
35 L A -1.5229
36 M A 0.0000
37 G A -2.2787
38 E A -3.9237
39 E A -3.4730
40 N A -2.7416
41 P A -2.3648
42 L A 0.0000
43 R A -1.7703
44 I A 0.0000
45 T A -1.5269
46 V A 0.0000
47 Q A -1.3920
48 A A 0.0000
49 V A -1.6396
50 I A 0.0000
51 P A -1.3968
52 S A -1.6379
53 R A -2.0709
54 T A -1.2895
55 V A -1.4937
56 N A -2.7238
57 R A -3.3122
58 K A -3.2133
59 E A -2.1438
60 S A -1.4148
61 F A -0.9834
62 E A -1.7646
63 V A -0.4896
64 L A -0.1415
65 V A 0.0000
66 R A -2.9229
67 T A -3.2731
68 K A -4.0823
69 E A -4.0977
70 E A -3.2785
71 Q A 0.0000
72 E A -4.4389
73 E A -4.1486
74 S A 0.0000
75 I A 0.0000
76 E A -3.1612
77 E A -3.2318
78 L A 0.0000
79 V A 0.0000
80 K A -3.0810
81 K A -2.5201
82 L A 0.0000
83 M A -2.9001
84 E A -3.8169
85 V A 0.0000
86 K A -3.9601
87 E A -4.5113
88 K A -4.1157
89 W A 0.0000
90 K A -4.4400
91 D A -3.6239
92 E A -2.6599
93 P A -1.6534
94 E A -2.0114
95 I A 0.0000
96 I A 0.0000
97 V A 0.0000
98 E A -1.4275
99 I A 0.0000
100 R A -2.6443
101 I A 0.0000
102 E A -2.5290
103 K A -1.9543
104 V A -1.7026
105 E A -2.0602
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