| Chain sequence(s) |
A: FSQQIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTMKFFLYVLESLPSPTLTCALTNGSIEVQCMIPEHYNSHRGLIMYSWDCPMEQCKRNSTSIYFKMENDLPQKIQCTLSNPLFNTTSSIILTTCIPSSGHSRHR
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | FA1A |
| Energy difference between WT (input) and mutated protein (by FoldX) | -0.0416507 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimization (00:00:01)
[INFO] FoldX: Building mutant model (00:00:49)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:00:52)
[INFO] Main: Simulation completed successfully. (00:00:53)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 1 | A | A | -0.7564 | mutated: FA1A |
| 2 | S | A | -1.2605 | |
| 3 | Q | A | -1.7881 | |
| 4 | Q | A | -1.3343 | |
| 5 | I | A | -0.3299 | |
| 6 | Y | A | 0.2964 | |
| 7 | G | A | 0.0000 | |
| 8 | V | A | 0.2236 | |
| 9 | V | A | 0.3180 | |
| 10 | Y | A | 0.6852 | |
| 11 | G | A | -0.2076 | |
| 12 | N | A | -0.9457 | |
| 13 | V | A | 0.0000 | |
| 14 | T | A | -0.2534 | |
| 15 | F | A | 0.0000 | |
| 16 | H | A | -1.1038 | |
| 17 | V | A | 0.0000 | |
| 18 | P | A | -0.5992 | |
| 19 | S | A | -0.2191 | |
| 20 | N | A | -0.4395 | |
| 21 | V | A | 0.8149 | |
| 22 | P | A | 0.1843 | |
| 23 | L | A | 0.0000 | |
| 24 | K | A | -2.3863 | |
| 25 | E | A | -2.6363 | |
| 26 | V | A | 0.0000 | |
| 27 | L | A | -0.6639 | |
| 28 | W | A | 0.0000 | |
| 29 | K | A | -2.2870 | |
| 30 | K | A | -2.6598 | |
| 31 | Q | A | -3.1008 | |
| 32 | K | A | -3.5449 | |
| 33 | D | A | -3.4262 | |
| 34 | K | A | -2.3243 | |
| 35 | V | A | 0.0000 | |
| 36 | A | A | 0.0000 | |
| 37 | E | A | 0.0000 | |
| 38 | L | A | 0.0000 | |
| 39 | E | A | -3.2120 | |
| 40 | N | A | -2.9744 | |
| 41 | S | A | -2.5125 | |
| 42 | E | A | -2.6111 | |
| 43 | F | A | -0.8686 | |
| 44 | R | A | -1.4172 | |
| 45 | A | A | -1.0157 | |
| 46 | F | A | -1.2568 | |
| 47 | S | A | -0.9598 | |
| 48 | S | A | -0.9663 | |
| 49 | F | A | 0.0000 | |
| 50 | K | A | -2.4178 | |
| 51 | N | A | -2.0179 | |
| 52 | R | A | -1.2727 | |
| 53 | V | A | -0.1945 | |
| 54 | Y | A | 0.8514 | |
| 55 | L | A | 0.0000 | |
| 56 | D | A | 0.3530 | |
| 57 | T | A | 0.2114 | |
| 58 | V | A | 1.1935 | |
| 59 | S | A | 0.2398 | |
| 60 | G | A | 0.0000 | |
| 61 | S | A | -0.1489 | |
| 62 | L | A | 0.0000 | |
| 63 | T | A | 0.0916 | |
| 64 | I | A | 0.0000 | |
| 65 | Y | A | -0.2458 | |
| 66 | N | A | -0.7910 | |
| 67 | L | A | 0.0000 | |
| 68 | T | A | -0.2675 | |
| 69 | S | A | -0.4235 | |
| 70 | S | A | -0.5087 | |
| 71 | D | A | 0.0000 | |
| 72 | E | A | -0.8341 | |
| 73 | D | A | -1.1406 | |
| 74 | E | A | -1.9320 | |
| 75 | Y | A | 0.0000 | |
| 76 | E | A | -1.6485 | |
| 77 | M | A | 0.0000 | |
| 78 | E | A | -1.3391 | |
| 79 | S | A | -1.4371 | |
| 80 | P | A | -1.2214 | |
| 81 | N | A | -1.1801 | |
| 82 | I | A | -0.4444 | |
| 83 | T | A | -0.9821 | |
| 84 | D | A | -1.9849 | |
| 85 | T | A | -1.2561 | |
| 86 | M | A | -1.1387 | |
| 87 | K | A | -1.7018 | |
| 88 | F | A | 0.0000 | |
| 89 | F | A | -0.8793 | |
| 90 | L | A | 0.0000 | |
| 91 | Y | A | -0.2043 | |
| 92 | V | A | 0.0000 | |
| 93 | L | A | 0.0000 | |
| 94 | E | A | -1.4443 | |
| 95 | S | A | -0.8218 | |
| 96 | L | A | 0.0000 | |
| 97 | P | A | -0.5164 | |
| 98 | S | A | -0.3847 | |
| 99 | P | A | 0.0000 | |
| 100 | T | A | -0.0721 | |
| 101 | L | A | 0.1679 | |
| 102 | T | A | 0.0573 | |
| 103 | C | A | 0.3529 | |
| 104 | A | A | 0.2307 | |
| 105 | L | A | 0.2041 | |
| 106 | T | A | -0.6025 | |
| 107 | N | A | -1.5304 | |
| 108 | G | A | -1.4945 | |
| 109 | S | A | 0.0000 | |
| 110 | I | A | 0.0000 | |
| 111 | E | A | -0.3084 | |
| 112 | V | A | 0.0000 | |
| 113 | Q | A | -0.1998 | |
| 114 | C | A | 0.0000 | |
| 115 | M | A | 0.1317 | |
| 116 | I | A | -0.5692 | |
| 117 | P | A | -1.2221 | |
| 118 | E | A | -2.4571 | |
| 119 | H | A | -2.1747 | |
| 120 | Y | A | 0.0000 | |
| 121 | N | A | -2.4332 | |
| 122 | S | A | -1.6398 | |
| 123 | H | A | -1.2179 | |
| 124 | R | A | -1.2611 | |
| 125 | G | A | -0.7880 | |
| 126 | L | A | -0.0551 | |
| 127 | I | A | 0.0000 | |
| 128 | M | A | 0.2999 | |
| 129 | Y | A | -0.1621 | |
| 130 | S | A | -1.2784 | |
| 131 | W | A | 0.0000 | |
| 132 | D | A | -2.5678 | |
| 133 | C | A | -1.8757 | |
| 134 | P | A | -1.2378 | |
| 135 | M | A | -1.4146 | |
| 136 | E | A | -2.6319 | |
| 137 | Q | A | -2.0896 | |
| 138 | C | A | 0.0000 | |
| 139 | K | A | -3.4906 | |
| 140 | R | A | -3.1293 | |
| 141 | N | A | -2.0615 | |
| 142 | S | A | -1.1958 | |
| 143 | T | A | -0.3525 | |
| 144 | S | A | -0.3678 | |
| 145 | I | A | 0.0000 | |
| 146 | Y | A | 0.4128 | |
| 147 | F | A | 0.0000 | |
| 148 | K | A | -2.4459 | |
| 149 | M | A | -1.8762 | |
| 150 | E | A | -3.1073 | |
| 151 | N | A | -3.2078 | |
| 152 | D | A | -2.8938 | |
| 153 | L | A | -1.6918 | |
| 154 | P | A | -1.3324 | |
| 155 | Q | A | -1.7853 | |
| 156 | K | A | -1.9643 | |
| 157 | I | A | 0.0000 | |
| 158 | Q | A | -1.2827 | |
| 159 | C | A | 0.0000 | |
| 160 | T | A | -0.7937 | |
| 161 | L | A | 0.0000 | |
| 162 | S | A | -0.0154 | |
| 163 | N | A | 0.0000 | |
| 164 | P | A | 0.4580 | |
| 165 | L | A | 0.6634 | |
| 166 | F | A | 0.1149 | |
| 167 | N | A | -0.8243 | |
| 168 | T | A | -0.6500 | |
| 169 | T | A | -0.7311 | |
| 170 | S | A | -0.2095 | |
| 171 | S | A | -0.5989 | |
| 172 | I | A | -0.1666 | |
| 173 | I | A | -0.2168 | |
| 174 | L | A | 0.0000 | |
| 175 | T | A | -0.1504 | |
| 176 | T | A | 0.1841 | |
| 177 | C | A | 0.0000 | |
| 178 | I | A | 0.6539 | |
| 179 | P | A | -0.0980 | |
| 180 | S | A | -0.5538 | |
| 181 | S | A | -0.8125 | |
| 182 | G | A | -1.4609 | |
| 183 | H | A | -2.1160 | |
| 184 | S | A | -2.2853 | |
| 185 | R | A | -3.3486 | |
| 186 | H | A | -3.0060 | |
| 187 | R | A | -2.8971 |