| Chain sequence(s) |
A: EVQLVESGGALVKPGGSLRLSCAASGFTFTEAWMHWVRQAPGKQLEWVAQIKDRSQTYATYYAESVKGRFTISRDDSKNTLYLQMNSLKTEDTAVYYCRGVYYANAPFDYWGQGTLVTVSSGGGGSGGGGSGGGGSDIVMTQSPLSLPVTPGEPASISCRSSQSLVHNTGNTYLSWYLQKPGQSPQSLIYKVSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCGQGTQAPFTFGSGTKVEIK
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | LT11A |
| Energy difference between WT (input) and mutated protein (by FoldX) | 0.706288 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimization (00:00:01)
[INFO] FoldX: Building mutant model (00:01:07)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:01:10)
[INFO] Main: Simulation completed successfully. (00:01:11)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 1 | E | A | -2.1777 | |
| 2 | V | A | -1.3587 | |
| 3 | Q | A | -1.3970 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.9119 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.1533 | |
| 8 | G | A | -0.6399 | |
| 9 | G | A | 0.0197 | |
| 10 | A | A | 0.0752 | |
| 11 | T | A | -0.2091 | mutated: LT11A |
| 12 | V | A | -0.9953 | |
| 13 | K | A | -2.1651 | |
| 14 | P | A | -1.8564 | |
| 15 | G | A | -1.4039 | |
| 16 | G | A | -1.1925 | |
| 17 | S | A | -1.2496 | |
| 18 | L | A | -0.9568 | |
| 19 | R | A | -1.8345 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.3549 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.1859 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -1.1138 | |
| 26 | G | A | -1.2956 | |
| 27 | F | A | -0.6740 | |
| 28 | T | A | -0.5779 | |
| 29 | F | A | 0.0000 | |
| 30 | T | A | -1.3884 | |
| 31 | E | A | -1.8005 | |
| 32 | A | A | 0.0000 | |
| 33 | W | A | -0.1881 | |
| 34 | M | A | 0.0000 | |
| 35 | H | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | V | A | 0.0000 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -0.7004 | |
| 40 | A | A | -1.1232 | |
| 41 | P | A | -1.0746 | |
| 42 | G | A | -1.5371 | |
| 43 | K | A | -2.4281 | |
| 44 | Q | A | -1.7307 | |
| 45 | L | A | 0.0000 | |
| 46 | E | A | -1.0907 | |
| 47 | W | A | 0.0000 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | Q | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | K | A | -0.7481 | |
| 53 | D | A | 0.0000 | |
| 54 | R | A | -2.3720 | |
| 55 | S | A | -1.6535 | |
| 56 | Q | A | -1.5034 | |
| 57 | T | A | -1.0064 | |
| 58 | Y | A | -0.5312 | |
| 59 | A | A | -0.2520 | |
| 60 | T | A | 0.2126 | |
| 61 | Y | A | 0.1605 | |
| 62 | Y | A | -0.6000 | |
| 63 | A | A | -1.2894 | |
| 64 | E | A | -2.6671 | |
| 65 | S | A | -1.9839 | |
| 66 | V | A | 0.0000 | |
| 67 | K | A | -2.5130 | |
| 68 | G | A | -1.7342 | |
| 69 | R | A | -1.5285 | |
| 70 | F | A | 0.0000 | |
| 71 | T | A | -0.7657 | |
| 72 | I | A | 0.0000 | |
| 73 | S | A | -0.3192 | |
| 74 | R | A | -0.8550 | |
| 75 | D | A | -1.4850 | |
| 76 | D | A | -1.8081 | |
| 77 | S | A | -1.4922 | |
| 78 | K | A | -2.3384 | |
| 79 | N | A | -1.6903 | |
| 80 | T | A | -0.9817 | |
| 81 | L | A | 0.0000 | |
| 82 | Y | A | -0.5449 | |
| 83 | L | A | 0.0000 | |
| 84 | Q | A | -1.2275 | |
| 85 | M | A | 0.0000 | |
| 86 | N | A | -1.3480 | |
| 87 | S | A | -1.1691 | |
| 88 | L | A | 0.0000 | |
| 89 | K | A | -2.0709 | |
| 90 | T | A | -1.9360 | |
| 91 | E | A | -2.5032 | |
| 92 | D | A | 0.0000 | |
| 93 | T | A | -0.4797 | |
| 94 | A | A | 0.0000 | |
| 95 | V | A | 0.9011 | |
| 96 | Y | A | 0.0000 | |
| 97 | Y | A | 0.0000 | |
| 98 | C | A | 0.0000 | |
| 99 | R | A | 0.0000 | |
| 100 | G | A | 0.0000 | |
| 101 | V | A | 0.0000 | |
| 102 | Y | A | 0.0897 | |
| 103 | Y | A | 0.1007 | |
| 104 | A | A | -0.4796 | |
| 105 | N | A | -1.1084 | |
| 106 | A | A | -0.3810 | |
| 107 | P | A | -0.1144 | |
| 108 | F | A | 0.3906 | |
| 109 | D | A | 0.0000 | |
| 110 | Y | A | 0.1334 | |
| 111 | W | A | 0.0000 | |
| 112 | G | A | 0.0000 | |
| 113 | Q | A | -1.2737 | |
| 114 | G | A | 0.0000 | |
| 115 | T | A | 0.6855 | |
| 116 | L | A | 1.5988 | |
| 117 | V | A | 0.0000 | |
| 118 | T | A | -0.1781 | |
| 119 | V | A | 0.0000 | |
| 120 | S | A | -1.5178 | |
| 121 | S | A | -1.4238 | |
| 122 | G | A | -1.2720 | |
| 123 | G | A | -1.1358 | |
| 124 | G | A | -1.1706 | |
| 125 | G | A | -1.1868 | |
| 126 | S | A | -0.9873 | |
| 127 | G | A | -1.4089 | |
| 128 | G | A | -1.4951 | |
| 129 | G | A | -1.5099 | |
| 130 | G | A | -1.3978 | |
| 131 | S | A | -1.2154 | |
| 132 | G | A | -1.1683 | |
| 133 | G | A | -1.6836 | |
| 134 | G | A | -1.4912 | |
| 135 | G | A | -1.6233 | |
| 136 | S | A | -1.0542 | |
| 137 | D | A | -1.4009 | |
| 138 | I | A | 0.0000 | |
| 139 | V | A | 0.8358 | |
| 140 | M | A | 0.0000 | |
| 141 | T | A | -0.3539 | |
| 142 | Q | A | 0.0000 | |
| 143 | S | A | -0.1292 | |
| 144 | P | A | 0.3713 | |
| 145 | L | A | 1.2127 | |
| 146 | S | A | 0.1233 | |
| 147 | L | A | -0.2238 | |
| 148 | P | A | -0.9754 | |
| 149 | V | A | 0.0000 | |
| 150 | T | A | -1.4661 | |
| 151 | P | A | -1.7047 | |
| 152 | G | A | -1.9533 | |
| 153 | E | A | -2.3758 | |
| 154 | P | A | -2.1513 | |
| 155 | A | A | 0.0000 | |
| 156 | S | A | -0.7165 | |
| 157 | I | A | 0.0000 | |
| 158 | S | A | -0.8511 | |
| 159 | C | A | 0.0000 | |
| 160 | R | A | -2.3233 | |
| 161 | S | A | 0.0000 | |
| 162 | S | A | -0.9393 | |
| 163 | Q | A | -1.4229 | |
| 164 | S | A | -0.7794 | |
| 165 | L | A | 0.0000 | |
| 166 | V | A | 0.6461 | |
| 167 | H | A | -0.4969 | |
| 168 | N | A | -1.2513 | |
| 169 | T | A | -0.8110 | |
| 170 | G | A | -0.6696 | |
| 171 | N | A | -0.4723 | |
| 172 | T | A | -0.0296 | |
| 173 | Y | A | 0.0585 | |
| 174 | L | A | 0.0000 | |
| 175 | S | A | 0.0000 | |
| 176 | W | A | 0.0000 | |
| 177 | Y | A | 0.0000 | |
| 178 | L | A | 0.0000 | |
| 179 | Q | A | 0.0000 | |
| 180 | K | A | -1.6841 | |
| 181 | P | A | -1.1102 | |
| 182 | G | A | -1.5197 | |
| 183 | Q | A | -2.1633 | |
| 184 | S | A | -1.4263 | |
| 185 | P | A | 0.0000 | |
| 186 | Q | A | -0.9512 | |
| 187 | S | A | 0.0000 | |
| 188 | L | A | 0.0000 | |
| 189 | I | A | 0.0000 | |
| 190 | Y | A | -0.4640 | |
| 191 | K | A | -0.7589 | |
| 192 | V | A | -0.6109 | |
| 193 | S | A | -0.9571 | |
| 194 | N | A | -1.4390 | |
| 195 | R | A | -1.9255 | |
| 196 | A | A | -0.8817 | |
| 197 | S | A | -0.7182 | |
| 198 | G | A | -0.8917 | |
| 199 | V | A | -0.9828 | |
| 200 | P | A | -1.2799 | |
| 201 | D | A | -2.3967 | |
| 202 | R | A | -2.0782 | |
| 203 | F | A | 0.0000 | |
| 204 | S | A | -1.3013 | |
| 205 | G | A | 0.0000 | |
| 206 | S | A | -0.7700 | |
| 207 | G | A | -1.0284 | |
| 208 | S | A | -0.6717 | |
| 209 | G | A | -0.7118 | |
| 210 | T | A | -1.4932 | |
| 211 | D | A | -2.1442 | |
| 212 | F | A | 0.0000 | |
| 213 | T | A | -0.9812 | |
| 214 | L | A | 0.0000 | |
| 215 | K | A | -1.5147 | |
| 216 | I | A | 0.0000 | |
| 217 | S | A | -2.2841 | |
| 218 | R | A | -3.2963 | |
| 219 | V | A | 0.0000 | |
| 220 | E | A | -2.5962 | |
| 221 | A | A | -1.4398 | |
| 222 | E | A | -2.2306 | |
| 223 | D | A | 0.0000 | |
| 224 | V | A | -0.8647 | |
| 225 | G | A | 0.0000 | |
| 226 | V | A | -0.1060 | |
| 227 | Y | A | 0.0000 | |
| 228 | Y | A | 0.0000 | |
| 229 | C | A | 0.0000 | |
| 230 | G | A | 0.0000 | |
| 231 | Q | A | 0.0000 | |
| 232 | G | A | -0.4149 | |
| 233 | T | A | 0.0000 | |
| 234 | Q | A | -1.1328 | |
| 235 | A | A | -0.6029 | |
| 236 | P | A | -0.8645 | |
| 237 | F | A | 0.0000 | |
| 238 | T | A | -0.1367 | |
| 239 | F | A | 0.0000 | |
| 240 | G | A | 0.0000 | |
| 241 | S | A | -0.3562 | |
| 242 | G | A | 0.0000 | |
| 243 | T | A | 0.0000 | |
| 244 | K | A | -0.5010 | |
| 245 | V | A | 0.0000 | |
| 246 | E | A | -1.2316 | |
| 247 | I | A | -0.7756 | |
| 248 | K | A | -1.6930 |