Project name: 21complex5

Status: done

Started: 2026-04-08 15:26:51
Chain sequence(s) A: GSLSAAIAAEILNLIRQGKAAEAAQFAFDNGVTLDEFADLVSAEAAKFSPVAAPDTPQLVTSEGMAFVKNAIVAFGLYSALCEFCRYPAQWRPLESRGPV
C: GSLSAAIAAEILNLIRQGKAAEAAQFAFDNGVTLDEFADLVSAEAAKFSPVAAPDTPQLVTSEGMAFVKNAIVAFGLYSALCEFCRYPAQWRPLESRGPV
B: GSLSAAIAAEILNLIRQGKAAEAAQFAFDNGVTLDEFADLVSAEAAKFSPVAAPDTPQLVTSEGMAFVKNAIVAFGLYSALCEFCRYPAQWRPLESRGPV
E: GSLSAAIAAEILNLIRQGKAAEAAQFAFDNGVTLDEFADLVSAEAAKFSPVAAPDTPQLVTSEGMAFVKNAIVAFGLYSALCEFCRYPAQWRPLESRGPV
D: GSLSAAIAAEILNLIRQGKAAEAAQFAFDNGVTLDEFADLVSAEAAKFSPVAAPDTPQLVTSEGMAFVKNAIVAFGLYSALCEFCRYPAQWRPLESRGPV
input PDB
Selected Chain(s) A,B,C,D,E
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
alphaCutter usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       PDB-Info: The input structure is globular. Max score is recommended for pH analysis.  (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:01)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:07:44)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/5fe240d6f808bd7/tmp/folded.pdb                (00:07:44)
[INFO]       Main:     Simulation completed successfully.                                          (00:10:03)
Show buried residues

Minimal score value
-3.244
Maximal score value
1.6032
Average score
-0.5118
Total score value
-255.9137

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
1 G A -0.6564
2 S A -0.3889
3 L A -0.3755
4 S A -0.0383
5 A A 0.0030
6 A A -0.0450
7 I A -0.2147
8 A A -0.4862
9 A A -0.5896
10 E A -1.4146
11 I A 0.0000
12 L A -1.2864
13 N A -2.1215
14 L A -1.6716
15 I A 0.0000
16 R A -3.2440
17 Q A -2.6794
18 G A -1.7477
19 K A -1.0815
20 A A 0.0000
21 A A 0.0000
22 E A -0.7150
23 A A 0.0000
24 A A 0.0000
25 Q A 0.0000
26 F A -0.4084
27 A A 0.0000
28 F A 0.0000
29 D A -1.4716
30 N A -1.4376
31 G A -1.1961
32 V A 0.0000
33 T A -0.6977
34 L A 0.0000
35 D A -1.3266
36 E A -1.1790
37 F A 0.0000
38 A A 0.0000
39 D A -2.1047
40 L A 0.0000
41 V A 0.0000
42 S A 0.0000
43 A A -1.0187
44 E A -0.9975
45 A A -0.7197
46 A A -0.6384
47 K A -1.2943
48 F A 0.0089
49 S A 0.0000
50 P A 0.6025
51 V A 1.2295
52 A A 0.0791
53 A A -0.4898
54 P A -0.9238
55 D A -2.0702
56 T A -1.0788
57 P A -0.5249
58 Q A 0.1086
59 L A 1.4753
60 V A 1.3123
61 T A 0.5100
62 S A -0.2887
63 E A -1.5734
64 G A 0.0000
65 M A 0.1141
66 A A -1.1065
67 F A 0.0000
68 V A -0.6610
69 K A -1.2917
70 N A 0.0000
71 A A 0.0000
72 I A 0.0155
73 V A 0.1707
74 A A 0.0000
75 F A 0.0000
76 G A 0.0210
77 L A 0.0000
78 Y A 0.0000
79 S A 0.0000
80 A A -0.1983
81 L A 0.0000
82 C A 0.0000
83 E A -0.1033
84 F A 0.0000
85 C A -0.2936
86 R A 0.1505
87 Y A 0.2824
88 P A -0.3892
89 A A -0.7349
90 Q A -1.1586
91 W A -0.6473
92 R A -1.4980
93 P A -1.2243
94 L A -0.3539
95 E A -1.9782
96 S A -1.9417
97 R A -1.9974
98 G A -1.0325
99 P A -0.1573
100 V A 1.3140
1 G B -0.5672
2 S B -0.3712
3 L B -0.2991
4 S B -0.1311
5 A B 0.0114
6 A B -0.0315
7 I B -0.1990
8 A B -0.4606
9 A B -0.6695
10 E B -1.4976
11 I B 0.0000
12 L B -1.3798
13 N B -2.2986
14 L B -1.5803
15 I B 0.0000
16 R B -2.9123
17 Q B -1.7109
18 G B -1.3764
19 K B -0.9522
20 A B 0.0000
21 A B -0.4708
22 E B -0.8059
23 A B 0.0000
24 A B 0.0000
25 Q B -0.6849
26 F B -0.0993
27 A B 0.0000
28 F B -0.4243
29 D B -1.2020
30 N B -1.2273
31 G B -0.8499
32 V B 0.0000
33 T B -0.7899
34 L B 0.0000
35 D B -1.0350
36 E B -0.9389
37 F B 0.0000
38 A B 0.0000
39 D B -1.9607
40 L B 0.0000
41 V B 0.0000
42 S B -0.8642
43 A B -0.9722
44 E B -1.2257
45 A B 0.0000
46 A B -0.5439
47 K B -1.2366
48 F B 0.0820
49 S B 0.0000
50 P B 0.4484
51 V B 1.2263
52 A B 0.1013
53 A B -0.5753
54 P B -0.9944
55 D B -2.1661
56 T B -1.0521
57 P B -0.8154
58 Q B -0.3239
59 L B 1.3437
60 V B 1.4199
61 T B 0.8062
62 S B 0.2144
63 E B -0.6850
64 G B 0.0000
65 M B 0.3435
66 A B -0.7097
67 F B 0.0000
68 V B -0.6243
69 K B -1.5710
70 N B -1.0685
71 A B 0.0000
72 I B -0.1930
73 V B 0.0000
74 A B 0.0000
75 F B 0.0000
76 G B -0.1050
77 L B 0.0000
78 Y B 0.0000
79 S B 0.0000
80 A B -0.2080
81 L B 0.0000
82 C B 0.0000
83 E B -0.1657
84 F B 0.0000
85 C B -0.0908
86 R B 0.2672
87 Y B 0.8315
88 P B -0.1479
89 A B -0.9531
90 Q B -1.2255
91 W B -0.8491
92 R B -2.2536
93 P B -1.2725
94 L B -0.5557
95 E B -2.2066
96 S B -2.1450
97 R B -2.4023
98 G B -1.1229
99 P B -0.2060
100 V B 1.2886
1 G C -0.5803
2 S C -0.3296
3 L C -0.3040
4 S C -0.0302
5 A C -0.0228
6 A C -0.1019
7 I C -0.3426
8 A C -0.5871
9 A C -0.7855
10 E C -1.7474
11 I C 0.0000
12 L C -1.3837
13 N C -2.3093
14 L C -1.4119
15 I C 0.0000
16 R C -2.9135
17 Q C -1.5912
18 G C -1.1915
19 K C 0.0000
20 A C 0.0000
21 A C 0.0000
22 E C 0.0000
23 A C 0.0000
24 A C 0.0000
25 Q C 0.0000
26 F C -0.4330
27 A C 0.0000
28 F C 0.0000
29 D C -1.6020
30 N C -1.3579
31 G C -1.1067
32 V C 0.0000
33 T C -0.6771
34 L C 0.0000
35 D C -0.9349
36 E C -1.1255
37 F C 0.0000
38 A C 0.0000
39 D C -2.1060
40 L C 0.0000
41 V C 0.0000
42 S C 0.0000
43 A C -1.0222
44 E C -1.0989
45 A C -0.7399
46 A C -0.7481
47 K C -1.4297
48 F C -0.2357
49 S C -0.0449
50 P C 0.3138
51 V C 1.0752
52 A C -0.0509
53 A C -0.6282
54 P C -1.0368
55 D C -2.1812
56 T C -1.2670
57 P C -0.8984
58 Q C -0.6892
59 L C 0.8952
60 V C 0.5914
61 T C 0.1181
62 S C -0.3875
63 E C -1.7416
64 G C 0.0000
65 M C 0.0814
66 A C -0.9845
67 F C 0.0000
68 V C -0.3830
69 K C -1.3393
70 N C 0.0000
71 A C 0.0000
72 I C 0.2169
73 V C 0.2349
74 A C 0.0000
75 F C 0.0000
76 G C 0.0761
77 L C 0.0000
78 Y C 0.0000
79 S C 0.0000
80 A C -0.1384
81 L C 0.0000
82 C C 0.0000
83 E C 0.0000
84 F C 0.0000
85 C C -0.3174
86 R C 0.0000
87 Y C 0.0299
88 P C -0.5030
89 A C -1.0912
90 Q C -1.5289
91 W C -0.9219
92 R C -2.1730
93 P C 0.0000
94 L C -0.6065
95 E C -2.2078
96 S C -2.1743
97 R C -2.4158
98 G C -1.1198
99 P C -0.2003
100 V C 1.2870
1 G D -0.6305
2 S D -0.3689
3 L D -0.3057
4 S D -0.1570
5 A D -0.0198
6 A D -0.0881
7 I D -0.2196
8 A D -0.4650
9 A D -0.5786
10 E D -1.4558
11 I D 0.0000
12 L D -1.1907
13 N D -1.7867
14 L D -1.4978
15 I D 0.0000
16 R D -3.0506
17 Q D -2.2083
18 G D -1.8328
19 K D -1.4499
20 A D 0.0000
21 A D 0.0000
22 E D -1.0744
23 A D 0.0000
24 A D 0.0000
25 Q D -0.7916
26 F D -0.3417
27 A D 0.0000
28 F D 0.0000
29 D D -1.1161
30 N D -1.2444
31 G D -0.9692
32 V D 0.0000
33 T D -0.8590
34 L D 0.0000
35 D D -1.0972
36 E D -0.9617
37 F D 0.0000
38 A D 0.0000
39 D D -2.0124
40 L D 0.0000
41 V D 0.0000
42 S D 0.0000
43 A D -1.0556
44 E D -1.2147
45 A D -0.6116
46 A D -0.6641
47 K D -1.0165
48 F D 0.2878
49 S D 0.1680
50 P D 0.5062
51 V D 1.1974
52 A D 0.0995
53 A D -0.5815
54 P D -1.0272
55 D D -2.1616
56 T D -1.4423
57 P D -0.8811
58 Q D -0.3209
59 L D 0.8912
60 V D 1.6032
61 T D 0.5772
62 S D -0.1612
63 E D -1.5218
64 G D 0.0000
65 M D 0.5798
66 A D -0.8718
67 F D 0.0000
68 V D -0.3520
69 K D -1.2423
70 N D -0.9584
71 A D 0.0000
72 I D 0.1356
73 V D -0.0088
74 A D 0.0000
75 F D 0.0000
76 G D -0.0788
77 L D 0.0000
78 Y D 0.0000
79 S D 0.0000
80 A D -0.1688
81 L D 0.0000
82 C D 0.0000
83 E D -0.5057
84 F D 0.0000
85 C D -0.5935
86 R D -0.9687
87 Y D -0.3458
88 P D -0.6244
89 A D -0.8026
90 Q D -1.1417
91 W D -0.3627
92 R D -1.2061
93 P D -0.7586
94 L D -0.2352
95 E D -1.9232
96 S D -1.8100
97 R D -2.1330
98 G D -1.0877
99 P D -0.1849
100 V D 1.2977
1 G E -0.7000
2 S E -0.2131
3 L E -0.1130
4 S E -0.0211
5 A E 0.0057
6 A E -0.0627
7 I E -0.2080
8 A E -0.4566
9 A E -0.6334
10 E E -1.4087
11 I E 0.0000
12 L E 0.0000
13 N E -1.8567
14 L E -1.3801
15 I E 0.0000
16 R E -2.4774
17 Q E -1.6589
18 G E -1.3497
19 K E -0.8405
20 A E 0.0000
21 A E -0.2102
22 E E -0.6968
23 A E 0.0000
24 A E 0.0000
25 Q E -0.7106
26 F E -0.4463
27 A E 0.0000
28 F E -0.5021
29 D E -1.2352
30 N E -1.2581
31 G E -0.8592
32 V E 0.0000
33 T E -0.8077
34 L E 0.0000
35 D E -0.9475
36 E E -0.8716
37 F E 0.0000
38 A E 0.0000
39 D E -1.9940
40 L E 0.0000
41 V E 0.0000
42 S E -0.9282
43 A E -0.9365
44 E E -0.8754
45 A E -0.6129
46 A E -0.4896
47 K E -1.2666
48 F E 0.0627
49 S E 0.0000
50 P E 0.5161
51 V E 1.3413
52 A E 0.1174
53 A E -0.5597
54 P E -0.9474
55 D E -2.1028
56 T E -1.1565
57 P E -0.6309
58 Q E -0.0835
59 L E 1.3255
60 V E 0.9732
61 T E 0.2743
62 S E -0.4900
63 E E -1.7468
64 G E 0.0000
65 M E -0.3107
66 A E -1.2228
67 F E 0.0000
68 V E -0.6344
69 K E -1.5181
70 N E -0.9352
71 A E 0.0000
72 I E 0.2154
73 V E 0.4055
74 A E 0.0000
75 F E 0.0000
76 G E 0.1580
77 L E 0.0000
78 Y E 0.0000
79 S E 0.0000
80 A E -0.2402
81 L E 0.0000
82 C E 0.0000
83 E E -0.3699
84 F E 0.0000
85 C E -0.4099
86 R E -0.1004
87 Y E -0.1142
88 P E -0.6031
89 A E -1.0741
90 Q E -1.6002
91 W E -0.9603
92 R E -2.1897
93 P E -1.5268
94 L E -0.5735
95 E E -2.1776
96 S E -2.0964
97 R E -2.4753
98 G E -1.0546
99 P E -0.2016
100 V E 1.2812
Download PDB file
View in 3Dmol

Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is globular. Max score is recommended for pH analysis.

pH
Average A4D Score
Max A4D Score
4.0 -0.0294 3.1568 View CSV PDB
4.5 -0.0834 3.1579 View CSV PDB
5.0 -0.1523 3.1612 View CSV PDB
5.5 -0.2254 3.171 View CSV PDB
6.0 -0.2903 3.1958 View CSV PDB
6.5 -0.3361 3.2453 View CSV PDB
7.0 -0.3589 3.3183 View CSV PDB
7.5 -0.3643 3.4048 View CSV PDB
8.0 -0.3599 3.4966 View CSV PDB
8.5 -0.3488 3.5901 View CSV PDB
9.0 -0.3303 3.6837 View CSV PDB