Project name: wtBLM

Status: done

Started: 2026-08-18 09:34:00
Chain sequence(s) A: LKHEERFQSLSFPHTKEMMMKIFHHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVDQVQKLTSLDIPATYLTGSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHMLRQKFPSVPVMALTATTANPRVQKDILTQLKILRPQVFSMSFNRRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYDSGIIYCLSRREECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGNHHTRETHFNNLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKKHPDVSCDNCCKKVSQREEMVKKCLGELTEVCKSLGKVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEEKYGAEVISVLQKYSEWTS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
alphaCutter usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       PDB-Info: The input structure is globular. Max score is recommended for pH analysis.  (00:00:03)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:03)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:14:30)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/6490b781f41ab55/tmp/folded.pdb                (00:14:30)
[INFO]       Main:     Simulation completed successfully.                                          (00:20:02)
Show buried residues

Minimal score value
-3.8984
Maximal score value
1.5776
Average score
-0.8422
Total score value
-415.2197

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
639 L A -0.2526
640 K A -1.9522
641 H A -2.2252
642 E A -3.1185
643 R A -3.0482
644 F A 0.0000
645 Q A -2.3600
646 S A -0.8658
647 L A 0.7206
648 S A -0.0586
649 F A -0.0156
650 P A -0.5339
651 H A -0.7145
652 T A 0.0000
653 K A -2.4936
654 E A -2.6987
655 M A 0.0000
656 M A -1.6574
657 K A -2.7943
658 I A -1.7489
659 F A 0.0000
660 H A -2.2762
661 K A -2.7415
662 K A -2.0463
663 F A 0.0000
664 G A 0.0000
665 L A -1.2581
666 H A -1.7019
667 N A -1.6768
668 F A -0.8599
669 R A -1.3573
670 T A -0.7474
671 N A -0.6675
672 Q A 0.0000
673 L A -0.3455
674 E A -1.4619
675 A A 0.0000
676 I A 0.0000
677 N A 0.0000
678 A A 0.0000
679 A A 0.0000
680 L A 0.2539
681 L A 0.2565
682 G A -0.3923
683 E A -0.7276
684 D A -0.7130
685 C A 0.0000
686 F A 0.0000
687 I A 0.0000
688 L A 0.0000
689 M A 0.0000
690 P A 0.0000
691 T A -0.5076
692 G A -0.9843
693 G A -0.7802
694 G A -0.5740
695 K A 0.0000
696 S A -0.1061
697 L A 0.0000
698 C A 0.0000
699 Y A 0.0000
700 Q A 0.0000
701 L A 0.0000
702 P A 0.0000
703 A A 0.0000
704 C A -0.0793
705 V A -0.3772
706 S A -0.1391
707 P A -0.3979
708 G A -0.3312
709 V A 0.0000
710 T A 0.0000
711 V A 0.0000
712 V A 0.0000
713 I A 0.1219
714 S A 0.0000
715 P A -0.8845
716 L A -0.7534
717 R A -1.6038
718 S A -0.8119
719 L A 0.0000
720 I A 0.0000
721 V A 0.0805
722 D A 0.0000
723 Q A 0.0000
724 V A 0.2524
725 Q A -0.2578
726 K A -0.6195
727 L A 0.0000
728 T A -0.6963
729 S A 0.0000
730 L A 0.0000
731 D A -2.0311
732 I A 0.0000
733 P A -0.1814
734 A A -0.0224
735 T A 0.3112
736 Y A 0.2568
737 L A 0.0000
738 T A -0.8030
739 G A -0.8810
744 S A -1.3417
745 E A -2.2914
746 A A -1.3070
747 T A -1.0807
748 N A -1.3229
749 I A -0.3815
750 Y A 0.0000
751 L A 0.6530
752 Q A -0.3838
753 L A 0.0000
754 S A -1.2918
755 K A -2.3528
756 K A -2.9627
757 D A -2.1177
758 P A 0.0000
759 I A 0.7150
760 I A 0.0000
761 K A 0.1972
762 L A 0.0000
763 L A 0.0000
764 Y A 0.0000
765 V A 0.0000
766 T A 0.0000
767 P A -0.7944
768 E A -1.8278
769 K A -1.1988
770 I A 0.0000
771 C A -0.0147
772 A A -0.7314
773 S A -1.3585
774 N A -2.0307
775 R A -2.5637
776 L A 0.0000
777 I A -1.3046
778 S A -1.6277
779 T A -1.1224
780 L A 0.0000
781 E A -2.5939
782 N A -2.2171
783 L A 0.0000
784 Y A -2.2006
785 E A -3.0042
786 R A -2.6148
787 K A -2.6180
788 L A -1.5526
789 L A 0.0000
790 A A -0.3494
791 R A 0.0000
792 F A 0.0000
793 V A 0.0000
794 I A 0.3441
795 D A 0.0000
796 E A -0.3727
797 A A -0.3731
798 H A -1.1883
816 M A 0.5249
817 L A -0.2207
818 R A -1.2875
819 Q A -1.7676
820 K A -1.7857
821 F A 0.0000
822 P A -1.1900
823 S A -0.9139
824 V A 0.0000
825 P A -0.3867
826 V A 0.0000
827 M A 0.0000
828 A A 0.0000
829 L A 0.0000
830 T A 0.0000
831 A A 0.0000
832 T A -0.5171
833 A A 0.0000
834 N A 0.0000
835 P A -1.7672
836 R A -2.7456
837 V A -1.9283
838 Q A -2.0783
839 K A -3.2435
840 D A -3.5312
841 I A 0.0000
842 L A -1.8428
843 T A -1.9899
844 Q A -1.8720
845 L A 0.0000
846 K A -1.5692
847 I A 0.6588
848 L A -0.4129
849 R A -1.6047
850 P A -0.8717
851 Q A -0.6145
852 V A 0.2120
853 F A 0.0000
854 S A -0.0161
855 M A -0.0223
856 S A -0.3853
857 F A 0.0000
858 N A 0.0000
859 R A 0.0000
860 H A -1.2299
861 N A -1.1206
862 L A 0.0000
863 K A -0.5512
864 Y A 0.0000
865 Y A 0.5467
866 V A 0.4975
867 L A 0.2252
868 P A -0.2931
869 K A -1.5649
870 K A -2.9826
871 P A -2.1689
872 K A -2.7661
873 K A -2.7658
874 V A -1.9479
875 A A -1.2553
876 F A -1.0724
877 D A -2.3188
878 C A 0.0000
879 L A 0.0000
880 E A -2.8830
881 W A -2.0835
882 I A 0.0000
883 R A -2.5179
884 K A -2.8897
885 H A -1.7459
886 H A -0.8990
887 P A -0.8500
888 Y A 0.6455
889 D A -0.3113
890 S A 0.0000
891 G A 0.0000
892 I A 0.0000
893 I A 0.0000
894 Y A 0.0000
895 C A 0.0000
896 L A -0.3522
897 S A -1.3719
898 R A -2.9724
899 R A -3.0705
900 E A -1.9848
901 C A 0.0000
902 D A -2.1692
903 T A -1.7530
904 M A 0.0000
905 A A 0.0000
906 D A -2.6936
907 T A 0.0000
908 L A 0.0000
909 Q A -2.9466
910 R A -3.5501
911 D A -2.9698
912 G A -2.2151
913 L A 0.0000
914 A A -1.3194
915 A A 0.0000
916 L A -0.4165
917 A A -0.8603
918 Y A 0.0000
919 H A 0.0000
920 A A -0.7189
921 G A -1.3145
922 L A -1.0869
923 S A -1.6826
924 D A -2.8652
925 S A -2.3009
926 A A -2.2677
927 R A -2.8379
928 D A -3.8517
929 E A -3.6712
930 V A 0.0000
931 Q A -2.2946
932 Q A -2.9094
933 K A -2.7183
934 W A 0.0000
935 I A 0.0000
936 N A -1.8982
937 Q A -1.7782
938 D A -2.6575
939 G A -1.6703
940 C A 0.0000
941 Q A -0.6187
942 V A 0.0000
943 I A 0.0000
944 C A 0.0000
945 A A 0.0000
946 T A 0.2687
947 I A 1.5776
948 A A 0.8948
949 F A 0.6388
950 G A 0.0000
951 M A 0.4124
952 G A -0.3253
953 I A 0.0000
954 D A -0.5686
955 K A 0.0000
956 P A 0.0000
957 D A -0.6288
958 V A 0.0000
959 R A 0.0000
960 F A 0.0000
961 V A 0.0000
962 I A 0.0000
963 H A 0.0000
964 A A 0.0000
965 S A 0.0000
966 L A 0.0000
967 P A 0.0000
968 K A -0.8404
969 S A -0.7156
970 V A 0.0000
971 E A -0.6393
972 G A -0.3732
973 Y A 0.0000
974 Y A 0.0000
975 Q A -0.4191
976 E A 0.0000
977 S A 0.0000
978 G A 0.0000
979 R A -0.6135
980 A A 0.0000
981 G A 0.0000
982 R A -1.0892
983 D A -0.8921
984 G A -0.9340
985 E A -0.5437
986 I A -0.4009
987 S A 0.0000
988 H A -0.1055
989 C A 0.0000
990 L A 0.0000
991 L A 0.0000
992 F A 0.0000
993 Y A -0.1223
994 T A 0.0000
995 Y A 0.5487
996 H A -0.7505
997 D A 0.0000
998 V A 0.0000
999 T A -1.0228
1000 R A -1.3412
1001 L A 0.0000
1002 K A -1.4613
1003 R A -1.7962
1004 L A -0.7591
1005 I A 0.0000
1006 M A -0.6003
1007 M A -0.7208
1008 E A -2.5813
1009 K A -3.1183
1010 D A -3.2273
1011 G A -3.0897
1012 N A -3.0971
1013 H A -2.6960
1014 H A -2.7283
1015 T A -2.5658
1016 R A -2.7329
1017 E A -3.3349
1018 T A -2.0317
1019 H A -1.5310
1020 F A -1.3049
1021 N A -1.6318
1022 N A -1.1393
1023 L A 0.0000
1024 Y A 0.2933
1025 S A -0.4283
1026 M A 0.0000
1027 V A 0.0000
1028 H A -1.1491
1029 Y A 0.0000
1030 C A 0.0000
1031 E A -1.3931
1032 N A -0.6882
1033 I A 0.8054
1034 T A -0.1625
1035 E A -0.5504
1036 C A 0.0000
1037 R A 0.0000
1038 R A 0.0000
1039 I A -0.3924
1040 Q A -0.2590
1041 L A 0.0000
1042 L A 0.0000
1043 A A -0.2315
1044 Y A 0.1881
1045 F A 0.0000
1046 G A -0.9023
1047 E A -1.1878
1048 N A -1.7479
1049 G A -1.2994
1050 F A -1.0398
1051 N A -1.7543
1052 P A -1.9690
1053 D A -3.2042
1054 F A 0.0000
1055 C A 0.0000
1056 K A -3.5067
1057 K A -3.6484
1058 H A -2.9135
1059 P A -2.2289
1060 D A -2.4556
1061 V A 0.0000
1062 S A 0.0000
1063 C A 0.0000
1064 D A 0.0000
1065 N A -0.0356
1066 C A -0.7462
1067 C A -0.3896
1068 K A -1.1136
1207 K A -1.4221
1208 V A -1.0156
1209 S A -1.6206
1210 Q A -2.3603
1211 R A -2.8220
1212 E A -3.5168
1213 E A -3.5452
1214 M A -2.8016
1215 V A 0.0000
1216 K A -3.8984
1217 K A -3.2047
1218 C A 0.0000
1219 L A -2.0779
1220 G A -1.8889
1221 E A -1.9114
1222 L A 0.0000
1223 T A -1.3175
1224 E A -2.1598
1225 V A -1.1895
1226 C A 0.0000
1227 K A -1.6751
1228 S A -0.8586
1229 L A 0.0000
1230 G A 0.0000
1231 K A -0.9141
1232 V A 1.1881
1233 F A 0.9750
1234 G A -0.0842
1235 V A 0.0000
1236 H A -0.8712
1237 Y A 0.0000
1238 F A 0.0000
1239 N A 0.0000
1240 I A 0.0000
1241 F A 0.0000
1242 N A -0.8217
1243 T A -0.4609
1244 V A -0.2333
1245 T A 0.0000
1246 L A 0.0000
1247 K A -1.6946
1248 K A -2.2357
1249 L A 0.0000
1250 A A 0.0000
1251 E A -2.9124
1252 S A -1.3654
1253 L A 0.0000
1254 S A 0.0000
1255 S A -1.2288
1256 D A -1.8067
1257 P A -1.6453
1258 E A -2.1240
1259 V A -0.8849
1260 L A 0.0000
1261 L A -1.5697
1262 Q A -1.5567
1263 I A 0.0000
1264 D A -1.6258
1265 G A -1.0753
1266 V A 0.0000
1267 T A 0.0000
1268 E A -2.6260
1269 D A -2.6142
1270 K A 0.0000
1271 L A -1.5560
1272 E A -2.5175
1273 K A -1.7952
1274 Y A 0.0000
1275 G A 0.0000
1276 A A -0.6109
1277 E A -0.7477
1278 V A 0.0000
1279 I A -0.4982
1280 S A -0.7535
1281 V A -0.7757
1282 L A 0.0000
1283 Q A -1.9683
1284 K A -2.3329
1285 Y A 0.0000
1286 S A -1.7811
1287 E A -2.2461
1288 W A -1.3129
1289 T A -1.1225
1290 S A -0.5594
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is globular. Max score is recommended for pH analysis.

pH
Average A4D Score
Max A4D Score
4.0 -0.868 2.6378 View CSV PDB
4.5 -0.9275 2.6383 View CSV PDB
5.0 -0.9998 2.6398 View CSV PDB
5.5 -1.0681 2.644 View CSV PDB
6.0 -1.1161 2.6535 View CSV PDB
6.5 -1.1344 2.6701 View CSV PDB
7.0 -1.1241 2.6918 View CSV PDB
7.5 -1.0943 2.716 View CSV PDB
8.0 -1.0542 2.7411 View CSV PDB
8.5 -1.0076 2.7664 View CSV PDB
9.0 -0.9539 2.7916 View CSV PDB