| Chain sequence(s) |
A: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | No |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:01)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:00:01)
[INFO] Main: Simulation completed successfully. (00:00:01)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 1 | D | A | -2.2949 | |
| 2 | A | A | -1.7139 | |
| 3 | E | A | -2.4638 | |
| 4 | F | A | -1.0030 | |
| 5 | R | A | -2.8663 | |
| 6 | H | A | -3.0794 | |
| 7 | D | A | -2.7971 | |
| 8 | S | A | -1.7110 | |
| 9 | G | A | -1.4694 | |
| 10 | Y | A | -1.2518 | |
| 11 | E | A | -2.3045 | |
| 12 | V | A | -0.7956 | |
| 13 | H | A | -0.7152 | |
| 14 | H | A | -1.2337 | |
| 15 | Q | A | -0.3608 | |
| 16 | K | A | 0.2230 | |
| 17 | L | A | 1.9195 | |
| 18 | V | A | 2.2543 | |
| 19 | F | A | 2.2945 | |
| 20 | F | A | 2.1273 | |
| 21 | A | A | 0.8276 | |
| 22 | E | A | -1.0766 | |
| 23 | D | A | -1.4721 | |
| 24 | V | A | -0.8051 | |
| 25 | G | A | -1.6211 | |
| 26 | S | A | -2.0420 | |
| 27 | N | A | -2.1781 | |
| 28 | K | A | -1.7419 | |
| 29 | G | A | -0.8168 | |
| 30 | A | A | 0.0505 | |
| 31 | I | A | 0.9245 | |
| 32 | I | A | 2.4038 | |
| 33 | G | A | 1.9557 | |
| 34 | L | A | 3.0350 | |
| 35 | M | A | 3.1969 | |
| 36 | V | A | 4.1831 | |
| 37 | G | A | 2.9347 | |
| 38 | G | A | 2.9298 | |
| 39 | V | A | 4.0514 | |
| 40 | V | A | 4.1080 | |
| 41 | I | A | 3.5161 | |
| 42 | A | A | 1.7778 |