| Chain sequence(s) |
A: GGGGSMMLKKILKIEELDERELIDIEVSGNHLFYANDILTHNSAS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | SG5A |
| Energy difference between WT (input) and mutated protein (by FoldX) | 0.000230031 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:03)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:03)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:03)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:03)
[INFO] FoldX: Starting FoldX energy minimization (00:00:04)
[INFO] FoldX: Building mutant model (00:00:31)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:00:34)
[INFO] Main: Simulation completed successfully. (00:00:35)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 1 | G | A | -0.8858 | |
| 2 | G | A | -1.1157 | |
| 3 | G | A | -1.0348 | |
| 4 | G | A | -0.7052 | |
| 5 | G | A | 0.0731 | mutated: SG5A |
| 6 | M | A | 1.5971 | |
| 7 | M | A | 1.9137 | |
| 8 | L | A | 1.4838 | |
| 9 | K | A | -0.4930 | |
| 10 | K | A | -0.9964 | |
| 11 | I | A | 1.5822 | |
| 12 | L | A | 1.4444 | |
| 13 | K | A | -0.0442 | |
| 14 | I | A | 0.7679 | |
| 15 | E | A | -1.7563 | |
| 16 | E | A | -2.1158 | |
| 17 | L | A | -1.1462 | |
| 18 | D | A | -2.7817 | |
| 19 | E | A | -3.6072 | |
| 20 | R | A | -3.2327 | |
| 21 | E | A | -1.9108 | |
| 22 | L | A | 0.7175 | |
| 23 | I | A | 1.9297 | |
| 24 | D | A | 0.3917 | |
| 25 | I | A | 0.3309 | |
| 26 | E | A | -1.4398 | |
| 27 | V | A | -0.6879 | |
| 28 | S | A | -0.8174 | |
| 29 | G | A | -1.2715 | |
| 30 | N | A | -1.5033 | |
| 31 | H | A | -1.1562 | |
| 32 | L | A | 0.1999 | |
| 33 | F | A | 1.0746 | |
| 34 | Y | A | 1.5182 | |
| 35 | A | A | 0.3408 | |
| 36 | N | A | -1.0923 | |
| 37 | D | A | -0.8960 | |
| 38 | I | A | 1.5685 | |
| 39 | L | A | 1.6718 | |
| 40 | T | A | 0.6814 | |
| 41 | H | A | -0.3562 | |
| 42 | N | A | 0.0000 | |
| 43 | S | A | -0.5405 | |
| 44 | A | A | -0.5659 | |
| 45 | S | A | -0.6501 |