Project name: 68c62bff2410c38

Status: done

Started: 2026-04-14 19:45:59
Chain sequence(s) A: TYEKEFFDLLKRISHYSEAVALMHWDSRTGAPKNGSEDRAESIGQLSTDIFNIQTSDRMKELIDVLYERFDDLSEDTKKAVELAKKEYEENKKIPEAEYKEYVILCSKAETAWEEAKGKSDFSLFSPYLEQLIEFNKRFITYWGYQEHPYDALLDLFEPGVTVKVLDQLFAELKEAIIPLVKQVTASGNKPDTSFITKAFPKEKQKELSLYFLQELGYDFDGGRLDETVHPFATTLNRGDVRVTTRYDEKDFRTAIFGTIHECGHAIYEQNIDEALSGTNLSDGASMGIHESQSLFYENFIGRNKHFWTPYYKKIQEASPVQFKDISLDDFVRAINESKPSFIRVEADELTYPLHIIIRYEIEKAIFSNEVSVEDLPSLWNQKYQDYLGITPQTDAEGILQDVHWAGGDFGYFPSYALGYMYAAQLKQKMLEDLPEFDALLERGEFHPIKQWLTEKVHIHGKRKKPLDIIKDATGEELNVRYLIDYLSNKYSNLYL
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
alphaCutter usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       PDB-Info: The input structure is globular. Max score is recommended for pH analysis.  (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:02)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:11:32)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/68c62bff2410c38/tmp/folded.pdb                (00:11:32)
[INFO]       Main:     Simulation completed successfully.                                          (00:15:56)
Show buried residues

Minimal score value
-4.0162
Maximal score value
0.7023
Average score
-1.0241
Total score value
-507.9728

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
5 T A -0.8302
6 Y A -0.8358
7 E A -1.5743
8 K A -2.4018
9 E A -1.9605
10 F A 0.0000
11 F A -1.6093
12 D A -2.4027
13 L A -1.5374
14 L A 0.0000
15 K A -2.4762
16 R A -2.6434
17 I A -1.4060
18 S A -1.7361
19 H A -1.8836
20 Y A -0.8211
21 S A -0.7148
22 E A -0.8478
23 A A -0.1408
24 V A 0.0878
25 A A -0.0998
26 L A 0.2361
27 M A 0.0083
28 H A -0.3474
29 W A 0.0000
30 D A -0.6007
31 S A -0.9056
32 R A -0.8131
33 T A -0.8794
34 G A -1.1111
35 A A -1.2601
36 P A -1.7703
37 K A -2.9066
38 N A -2.9568
39 G A -2.6465
40 S A -3.1791
41 E A -3.9877
42 D A -3.8602
43 R A -3.1747
44 A A 0.0000
45 E A -3.6403
46 S A -1.9385
47 I A 0.0000
48 G A 0.0000
49 Q A -1.7097
50 L A -0.7236
51 S A 0.0000
52 T A 0.0000
53 D A -0.8471
54 I A -0.2402
55 F A 0.0000
56 N A -0.9975
57 I A -0.6097
58 Q A 0.0000
59 T A -2.1424
60 S A -1.7257
61 D A -2.7040
62 R A -2.4021
63 M A 0.0000
64 K A -2.5768
65 E A -2.5594
66 L A 0.0000
67 I A 0.0000
68 D A -2.5103
69 V A -1.6104
70 L A 0.0000
71 Y A -2.1726
72 E A -3.1586
73 R A -3.5522
74 F A -2.8236
75 D A -3.4861
76 D A -3.4613
77 L A -2.4035
78 S A -2.0255
79 E A -2.8790
80 D A -2.0422
81 T A 0.0000
82 K A -2.4822
83 K A -2.0794
84 A A 0.0000
85 V A 0.0000
86 E A -2.0550
87 L A -1.8524
88 A A 0.0000
89 K A -2.9017
90 K A -3.6271
91 E A -3.3838
92 Y A 0.0000
93 E A -4.0162
94 E A -3.3694
95 N A -3.0223
96 K A -3.7546
97 K A -2.9786
98 I A 0.0000
99 P A -1.3432
100 E A -2.0083
101 A A -1.1678
102 E A -1.2355
103 Y A -0.9943
104 K A -2.1139
105 E A -2.3461
106 Y A -1.0102
107 V A -0.8987
108 I A -1.7999
109 L A 0.0000
110 C A -0.4641
111 S A -1.1506
112 K A -1.5668
113 A A 0.0000
114 E A -0.9065
115 T A -1.4797
116 A A -0.8790
117 W A 0.0000
118 E A -2.0841
119 E A -2.1783
120 A A 0.0000
121 K A -1.8885
122 G A -2.1230
123 K A -2.6184
124 S A -1.8692
125 D A -1.4216
126 F A -0.8180
127 S A -0.3991
128 L A -0.1910
129 F A 0.0000
130 S A -0.8399
131 P A -0.6871
132 Y A -0.9193
133 L A 0.0000
134 E A -2.7174
135 Q A -2.0692
136 L A 0.0000
137 I A 0.0000
138 E A -2.5938
139 F A 0.0000
140 N A 0.0000
141 K A -1.6042
142 R A -1.1465
143 F A 0.0000
144 I A 0.0000
145 T A -0.2673
146 Y A -0.5356
147 W A -0.6535
148 G A -0.3405
149 Y A -0.3217
150 Q A -1.6914
151 E A -2.5154
152 H A -1.4665
153 P A -0.8147
154 Y A 0.0000
155 D A 0.0000
156 A A 0.0000
157 L A 0.0000
158 L A 0.0000
159 D A -1.0687
160 L A -0.1141
161 F A 0.0633
162 E A 0.0000
163 P A -0.7742
164 G A -0.4885
165 V A -0.3195
166 T A -1.2288
167 V A 0.0000
168 K A -2.2844
169 V A -0.6195
170 L A 0.0000
171 D A -2.8074
172 Q A -2.4742
173 L A -1.5175
174 F A 0.0000
175 A A -2.3358
176 E A -3.1491
177 L A 0.0000
178 K A -1.5972
179 E A -2.4636
180 A A -1.5679
181 I A 0.0000
182 I A -0.6809
183 P A -1.0492
184 L A -0.6485
185 V A 0.0000
186 K A -2.0710
187 Q A -1.1184
188 V A 0.0000
189 T A -1.5358
190 A A -0.8774
191 S A -0.8501
192 G A -1.0162
193 N A -1.4625
194 K A -2.4110
195 P A -2.2118
196 D A -2.6247
197 T A -1.6326
198 S A -1.0116
199 F A 0.0000
200 I A 0.0000
201 T A -1.6871
202 K A -1.8074
203 A A -1.4852
204 F A 0.0000
205 P A -2.1125
206 K A -3.0706
207 E A -3.4255
208 K A -3.1670
209 Q A 0.0000
210 K A -2.9879
211 E A -2.8589
212 L A 0.0000
213 S A 0.0000
214 L A -0.7276
215 Y A -0.7563
216 F A 0.0000
217 L A 0.0000
218 Q A -1.5563
219 E A -1.5035
220 L A 0.0000
221 G A -1.4001
222 Y A 0.0000
223 D A -2.5568
224 F A -1.5183
225 D A -2.2751
226 G A -1.8944
227 G A -1.5470
228 R A -1.3862
229 L A -0.6805
230 D A -1.2535
231 E A -1.5290
232 T A -0.5754
233 V A -0.0983
234 H A 0.0000
235 P A -0.0971
236 F A 0.0983
237 A A 0.0288
238 T A -0.1106
239 T A -0.7239
240 L A 0.0000
241 N A -1.4429
242 R A -1.7114
243 G A -1.6787
244 D A -1.4741
245 V A 0.0000
246 R A 0.0000
247 V A 0.0000
248 T A 0.0000
249 T A 0.0000
250 R A -0.9624
251 Y A -1.7629
252 D A -1.9647
253 E A -2.7341
254 K A -2.9219
255 D A -1.8931
256 F A 0.0000
257 R A -0.9873
258 T A -0.9687
259 A A 0.0000
260 I A 0.0000
261 F A 0.0000
262 G A -0.2986
263 T A 0.0000
264 I A 0.0000
265 H A -0.1354
266 E A 0.0000
267 C A 0.0000
268 G A 0.0000
269 H A 0.0000
270 A A 0.0000
271 I A 0.0000
272 Y A 0.0000
273 E A 0.0000
274 Q A -1.2105
275 N A -0.9055
276 I A 0.0000
277 D A -1.3561
278 E A -2.0962
279 A A -0.9871
280 L A 0.0000
281 S A -1.5146
282 G A -1.5482
283 T A -1.2446
284 N A -0.8107
285 L A 0.0000
286 S A -1.4833
287 D A -1.7730
288 G A 0.0000
289 A A 0.0000
290 S A -0.2842
291 M A 0.3878
292 G A 0.0000
293 I A 0.0000
294 H A 0.0000
295 E A 0.0000
296 S A 0.0000
297 Q A 0.0000
298 S A 0.0000
299 L A 0.0000
300 F A 0.0000
301 Y A 0.0000
302 E A -0.2892
303 N A 0.0000
304 F A 0.0000
305 I A 0.0000
306 G A 0.0000
307 R A 0.0000
308 N A -0.9248
309 K A -1.4591
310 H A -1.5462
311 F A 0.0000
312 W A 0.0000
313 T A -1.4511
314 P A -1.6181
315 Y A 0.0000
316 Y A 0.0000
317 K A -2.7066
318 K A -2.5458
319 I A 0.0000
320 Q A -2.3775
321 E A -2.8780
322 A A -1.9913
323 S A 0.0000
324 P A -1.2133
325 V A 0.3996
326 Q A 0.0000
327 F A 0.0000
328 K A -2.2585
329 D A -2.2386
330 I A -1.5798
331 S A -1.5194
332 L A -1.4014
333 D A -2.4132
334 D A -2.5456
335 F A 0.0000
336 V A 0.0000
337 R A -1.9858
338 A A 0.0000
339 I A 0.0000
340 N A 0.0000
341 E A -1.3069
342 S A 0.0000
343 K A -2.0718
344 P A -0.9747
345 S A -0.4833
346 F A 0.1058
347 I A 0.1607
348 R A 0.0000
349 V A 0.0756
350 E A -0.7806
351 A A -0.5617
352 D A 0.0000
353 E A 0.0000
354 L A 0.0000
355 T A 0.0000
356 Y A 0.0000
357 P A 0.0000
358 L A 0.0000
359 H A 0.0000
360 I A 0.0000
361 I A 0.0000
362 I A 0.0000
363 R A 0.0000
364 Y A 0.0000
365 E A -0.7467
366 I A 0.0000
367 E A 0.0000
368 K A -1.0146
369 A A -1.2167
370 I A 0.0000
371 F A 0.0000
372 S A -1.4160
373 N A -2.2653
374 E A -2.3974
375 V A -1.7295
376 S A -1.9315
377 V A -1.8446
378 E A -2.8406
379 D A -2.5611
380 L A 0.0000
381 P A -1.2777
382 S A -1.4286
383 L A -1.0714
384 W A 0.0000
385 N A -1.5830
386 Q A -2.1131
387 K A -1.8184
388 Y A 0.0000
389 Q A -2.0782
390 D A -2.5581
391 Y A -1.1844
392 L A 0.0000
393 G A -1.2363
394 I A -0.6650
395 T A -1.0602
396 P A 0.0000
397 Q A -1.3760
398 T A -1.1612
399 D A -1.4510
400 A A -1.1525
401 E A -0.6677
402 G A 0.0000
403 I A 0.0000
404 L A 0.0000
405 Q A 0.0000
406 D A 0.0000
407 V A -0.1767
408 H A 0.0000
409 W A 0.0000
410 A A 0.0000
411 G A -0.4531
412 G A -0.3805
413 D A -0.4668
414 F A 0.0000
415 G A 0.0000
416 Y A 0.0029
417 F A 0.0000
418 P A 0.0000
419 S A 0.0000
420 Y A 0.0000
421 A A 0.0000
422 L A 0.0000
423 G A 0.0000
424 Y A 0.0000
425 M A 0.0000
426 Y A 0.0000
427 A A 0.0000
428 A A 0.0000
429 Q A 0.0000
430 L A 0.0000
431 K A -0.8699
432 Q A -1.6612
433 K A -1.8728
434 M A 0.0000
435 L A -1.9133
436 E A -3.0407
437 D A -2.9251
438 L A -1.9845
439 P A -1.9263
440 E A -2.1342
441 F A 0.0000
442 D A -1.8019
443 A A -1.7844
444 L A -1.9183
445 L A 0.0000
446 E A -2.7087
447 R A -2.7963
448 G A -2.0420
449 E A -1.9574
450 F A 0.0000
451 H A -1.7585
452 P A -1.3064
453 I A 0.0000
454 K A -1.6212
455 Q A -2.0942
456 W A 0.0000
457 L A 0.0000
458 T A 0.0000
459 E A -2.1609
460 K A -1.6512
461 V A 0.0000
462 H A 0.0000
463 I A -0.5879
464 H A -1.0978
465 G A 0.0000
466 K A -1.5078
467 R A -1.8866
468 K A -1.9331
469 K A -2.0860
470 P A 0.0000
471 L A -1.7158
472 D A -2.8968
473 I A 0.0000
474 I A 0.0000
475 K A -3.3308
476 D A -3.1831
477 A A 0.0000
478 T A 0.0000
479 G A -2.2869
480 E A -2.6047
481 E A -2.8798
482 L A -1.2595
483 N A -1.1686
484 V A 0.0000
485 R A -1.9045
486 Y A -1.1256
487 L A 0.0000
488 I A -1.4212
489 D A -1.7633
490 Y A -1.0956
491 L A 0.0000
492 S A -1.3500
493 N A -1.8451
494 K A -1.2592
495 Y A 0.0000
496 S A -0.6597
497 N A -1.2251
498 L A 0.0000
499 Y A 0.0000
500 L A 0.7023
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is globular. Max score is recommended for pH analysis.

pH
Average A4D Score
Max A4D Score
4.0 -0.7934 1.4006 View CSV PDB
4.5 -0.8947 1.2255 View CSV PDB
5.0 -1.0206 1.2258 View CSV PDB
5.5 -1.1488 1.2267 View CSV PDB
6.0 -1.2568 1.2289 View CSV PDB
6.5 -1.3295 1.2331 View CSV PDB
7.0 -1.3638 1.239 View CSV PDB
7.5 -1.3694 1.2459 View CSV PDB
8.0 -1.3579 1.2531 View CSV PDB
8.5 -1.3337 1.2605 View CSV PDB
9.0 -1.2957 1.3173 View CSV PDB