Project name: Med13

Status: done

Started: 2026-01-27 22:46:59
Chain sequence(s) A: MSSDASTYRLEDVLSSFYRVEKIKKINYHQYISKAQNDQWSIQMEFMLRKQDPKTLVALLSRDLWCFSINDDPVPTPPAIEHKPVSPDKIGTFTADYSKPNLPPHYALFLKALRRKIYINLALGSHNKLIQFGNACISLSGVPNYLVQLEPHLFVNGDLTVSLCAKNMGLVPMKEENLEESFLSKHALYLAPSGIRMHLAPASKQGYLITPPKHTELLLTTLSVSHGINLQNKKNLKWVAVVPDLGHLNGHTPTIASYLTPLLEAKKLVWPLHLIFAQPVADIENSTSGDPSEFHCLQDALDAIDDFIQLKQTAAYRTPGSSGVLSSNIAGTNPLSSDGAYTEQFQHYKNNSISSQPASYHSVQETNKISPKDFSPNFTGIDKLMLSPSDQFAPAFLNTPNNNINENELFNDRKQTTVSNDLENSPLKTELEANGRSLEKVNNSVSKTGSVDTLHNKEGTLEQREQNENLPSDKSDSMVDKELFGEDEDEDLFGDSNKSNSTNESNKSISDEITEDMFEMSDEEENNNNKSINKNNKEMHTDLGKDIPFFPSSEKPNIRTMSGTTKRLNGKRKYLDIPIDEMTLPTSPLYMDPGAPLPVETPRDRRKSVFAPLNFNPIIENNVDNKYKSGGKFSFSPLQKEEALNFDISMADLSSSEEEEDEEENGSSDEDLKSLNVRDDMKPSDNISTNTNIHEPQYINYSSIPSLQDSIIKQENFNSVNDANITSNKEGFNSIWKIPQNDIPQTESPLKTVDSSIQPIESNIKMTLEDNNVTSNPSEFTPNMVNSEISNLPKDKSGIPEFTPADPNLSFESSSSLPFLLRHMPLASIPDIFITPTPVVTISEKEQDILDLIAEQVVTDYNILGNLGIPKIAYRGVKDCQEGLITTTMLQLFSTFDRLNGNDTISKFYNMKQPYVFVKKHHELIKVKHDSQPFIKFLNFRPPNGIKNFKSLLLSSSFKEDCLSFAPTLSQTYINQELGFCELLKLTNEDPPGLMYLKAFDKNKLLLLAAQIVSYCSNNKNSIKNVPPILIILPLDNATLTELVDKANIFQVIKNEVCAKMPNIELYLKVIPMDFIRNVLVTVDQYVNVAISIYNMLPPKSVKFTHIAHTLPEKVNFRTMQQQQMQQQQQQQQQQQNNSTGSSSIIYYDSYIHLAYSRSVDKEWVFAALSDSYGQGSMTKTWYVGNSRGKFDDACNQIWNIALNLASKKFGKICLILTRLNGILPDDELMNWRRLSGRNIHLAVVCVDDNSKISFIDEDKLYPSFKPIYKDTRFGGRMDMTRLYDYEIRDIDQDIHGIVFQHPFPLAHSQHRCAIRSGALIKFKKCDGDTVWDKFAVNLLNCPHSDSTQLLETILEEFRNLAALNVWYGLSDGEDGHIPWHILAVKKMMNTLVHTRVKIANTSAATVHTATSSSIILSDK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
alphaCutter usage A: MSSDASTYRLEDVLSSFYRVEKIKKINYHQYISKAQNDQWSIQMEFMLRKQDPKTLVALLSRDLWCFSINDDPVPTPPAIEHKPVSPDKIGTFTADYSKPNLPPHYALFLKALRRKIYINLALGSHNKLIQFGNACISLSGVPNYLVQLEPHLFVNGDLTVSLCAKNMGLVPMKEENLEESFLSKHALYLAPSGIRMHLAPASKQGYLITPPKHTELLLTTLSVSHGINLQNKKNLKWVAVVPDLGHLNGHTPTIASYLTPLLEAKKLVWPLHLIFAQPVADIENSTSGDPSEFHCLQDALDAIDDFIQLKQTAAY

RTPGSSGVLSSNIAGTNPLSSDGAYTEQFQHYKNNSISSQPASYHSVQETNKISPKDFSPNFTGIDKLMLSPSDQFAPAFLNTPNNNINENELFNDRKQTTVSNDLENSPLKTELEANGRSLEKVNNSVSKTGSVDTLHNKEGTLEQREQNENLPSDKSDSMVDKELFGEDEDEDLFGDSNKSNSTNESNKSISDEITEDMFEMSDEEENNNNKSINKNNKEMHTDLGKDIPFFPSSEKPNIRTMSGTTKRLNGKRKYLDIPIDEMTLPTSPLYMDPGAPLPVETPRDRRKSVFAPLNFNPIIENNVDNKYKSGGKFSFSPLQKEEALNFDISMADLSSSEEEEDEEENGSSDEDLKSLNVRDDMKPSDNISTNTNIHEPQYINYSSIPSLQDSIIKQENFNSVNDANITSNKEGFNSIWKIPQNDIPQTESPLKTVDSSIQPIESNIKMTLEDNNVTSNPSEFTPNMVNSEISNLPKDKSGIPEFTPAD

PNLSFESSSSLPFLLRHMPLASIPDIFITPTPVVTISEKEQDILDLIAEQVVTDYNILGNLGIPKIAYRGVKDCQEGLITTTMLQLFSTFDRLNGNDTISKFYNMKQPYVFVKKHHELIKVKHDSQPFIKFLNFRPPNGIKNFKSLLLSSSFKEDCLSFAPTLSQTYINQELGFCELLKLTNEDPPGLMYLKAFDKNKLLLLAAQIVSYCSNNKNSIKNVPPILIILPLDNATLTELVDKANIFQVIKNEVCAKMPNIELYLKVIPMDFIRNVLVTVDQYVNVAISIYNMLPPKSVKFTHIAHTLPEKVNFRTMQQQQMQQQQQQQQQQQNNSTGSSSIIYYDSYIHLAYSRSVDKEWVFAALSDSYGQGSMTKTWYVGNSRGKFDDACNQIWNIALNLASKKFGKICLILTRLNGILPDDELMNWRRLSGRNIHLAVVCVDDNSKISFIDEDKLYPSFKPIYKDTRFGGRMDMTRLYDYEIRDIDQDIHGIVFQHPFPLAHSQHRCAIRSGALIKFKKCDGDTVWDKFAVNLLNCPHSDSTQLLETILEEFRNLAALNVWYGLSDGEDGHIPWHILAVKKMMNTLVHTRVKIANTSAATVHTATSSSIILSDK
(Red indicates removed residues)
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       PDB:      Running AlphaCutter                                                         (00:00:02)
[INFO]       PDB-Info: The input structure is globular. Max score is recommended for pH analysis.  (00:00:53)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:53)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:22:13)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/693dcbffc939001/tmp/folded.pdb                (00:22:13)
[INFO]       Main:     Simulation completed successfully.                                          (00:29:19)
Show buried residues

Minimal score value
-4.0726
Maximal score value
3.3955
Average score
-0.6767
Total score value
-629.2876

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
1 M A 0.2635
2 S A -0.3304
3 S A -0.8208
4 D A -1.8269
5 A A -0.8502
6 S A -0.7820
7 T A -0.6205
8 Y A 0.0000
9 R A -2.5779
10 L A -2.2543
11 E A -3.2265
12 D A -2.8661
13 V A 0.0000
14 L A -1.2072
15 S A 0.0000
16 S A 0.0000
17 F A 0.0000
18 Y A 0.0000
19 R A -1.5355
20 V A 0.0000
21 E A -1.5781
22 K A -2.3663
23 I A 0.0000
24 K A -2.7555
25 K A -2.1415
26 I A 0.0000
27 N A -0.4699
28 Y A 0.2823
29 H A -0.0721
30 Q A -0.4276
31 Y A 0.0000
32 I A -1.2237
33 S A -1.8526
34 K A -2.0760
35 A A -1.7440
36 Q A -2.6166
37 N A -2.6800
38 D A -3.0141
39 Q A -2.0209
40 W A -1.3658
41 S A 0.0000
42 I A -0.2790
43 Q A -0.0436
44 M A 0.0000
45 E A 0.0000
46 F A -0.3562
47 M A -0.6439
48 L A 0.0000
49 R A 0.0000
50 K A -2.4335
51 Q A -2.4243
52 D A -2.1860
53 P A -1.4979
54 K A -1.7188
55 T A 0.0000
56 L A 0.0000
57 V A 0.0000
58 A A 0.0000
59 L A 0.0328
60 L A 0.0636
61 S A -0.9094
62 R A -2.3514
63 D A -1.1022
64 L A 0.0000
65 W A 0.0000
66 C A 0.0000
67 F A 0.0000
68 S A 0.0000
69 I A 0.0000
70 N A -2.5868
71 D A -3.1152
72 D A -2.7975
73 P A -1.4902
74 V A -0.4357
75 P A -0.3600
76 T A -0.1001
77 P A 0.0000
78 P A -0.3497
79 A A -0.7335
80 I A -0.5637
81 E A -2.3444
82 H A -2.3222
83 K A -2.4526
84 P A -1.2112
85 V A -0.5165
86 S A -0.6124
87 P A -0.7344
88 D A -1.9603
89 K A -0.9041
90 I A 1.0036
91 G A 0.6119
92 T A 0.1563
93 F A -0.5941
94 T A -1.2339
95 A A 0.0000
96 D A -1.8532
97 Y A -1.0741
98 S A -1.1205
99 K A -1.5082
100 P A -1.3671
101 N A -1.8726
102 L A 0.0000
103 P A -0.7853
104 P A -0.6276
105 H A -0.3303
106 Y A 0.0000
107 A A 0.0000
108 L A 0.0000
109 F A 0.0000
110 L A 0.0000
111 K A -0.8976
112 A A 0.0000
113 L A 0.0000
114 R A -0.6553
115 R A -0.6273
116 K A 0.0000
117 I A 0.0000
118 Y A 0.0000
119 I A 0.0000
120 N A 0.0000
121 L A 0.0000
122 A A 0.0000
123 L A -0.5004
124 G A -0.7839
125 S A 0.0000
126 H A -1.7307
127 N A -1.6405
128 K A -2.1694
129 L A -0.8670
130 I A 0.0000
131 Q A 0.0000
132 F A 0.0000
133 G A 0.0000
134 N A -0.5554
135 A A 0.0000
136 C A 0.0000
137 I A 0.0000
138 S A -0.3688
139 L A 0.0000
140 S A -0.7084
141 G A -0.0181
142 V A 1.3496
143 P A 0.4882
144 N A 0.0487
145 Y A -0.1097
146 L A 0.0000
147 V A 0.0056
148 Q A 0.0000
149 L A 0.0000
150 E A -0.5296
151 P A 0.0000
152 H A 0.0000
153 L A 0.0000
154 F A 0.0000
155 V A -0.5011
156 N A -1.5061
157 G A 0.0000
158 D A 0.0000
159 L A 0.0000
160 T A 0.0000
161 V A 0.0000
162 S A 0.0000
163 L A 0.0000
164 C A 0.0000
165 A A 0.0000
166 K A 0.0000
167 N A -1.0827
168 M A 0.0000
169 G A -0.1856
170 L A 0.0000
171 V A 0.3612
172 P A -0.1986
173 M A 0.0000
174 K A -3.2417
175 E A -3.7873
176 E A -3.5169
177 N A 0.0000
178 L A -2.4183
179 E A -3.3319
180 E A -2.8503
181 S A -1.8308
182 F A -1.6341
183 L A -1.3859
184 S A -1.5567
185 K A -1.9124
186 H A -0.6424
187 A A 0.0000
188 L A 0.0000
189 Y A 0.0000
190 L A 0.0000
191 A A 0.0000
192 P A 0.0000
193 S A 0.0000
194 G A 0.0000
195 I A 0.0000
196 R A 0.0000
197 M A 0.0000
198 H A -0.0665
199 L A 0.0118
200 A A -0.2723
201 P A -0.6895
202 A A -0.4736
203 S A -1.3809
204 K A -2.4629
205 Q A -2.3128
206 G A -1.2540
207 Y A 0.0000
208 L A 0.2444
209 I A 0.6065
210 T A -0.1140
211 P A -0.8109
212 P A -1.1210
213 K A -2.1091
214 H A -1.7656
215 T A -1.6115
216 E A -2.2668
217 L A -0.8742
218 L A 0.0000
219 L A 0.0000
220 T A -0.9553
221 T A 0.0000
222 L A 0.0000
223 S A -0.6203
224 V A -0.5956
225 S A 0.0000
226 H A 0.0000
227 G A 0.0000
228 I A 0.0000
229 N A -1.7838
230 L A 0.0000
231 Q A -2.9828
232 N A -3.0994
233 K A -3.3907
234 K A -3.3900
235 N A -2.7025
236 L A -2.0522
237 K A -1.8366
238 W A 0.0000
239 V A 0.0000
240 A A 0.0000
241 V A 0.0000
242 V A -0.9335
243 P A 0.0000
244 D A 0.0000
245 L A -0.4397
246 G A -0.9227
247 H A 0.0000
248 L A 0.0000
249 N A -1.8564
250 G A -1.3510
251 H A -1.6390
252 T A 0.0000
253 P A -0.2500
254 T A -0.4121
255 I A 0.0000
256 A A 0.0000
257 S A -0.2440
258 Y A 0.0000
259 L A -0.0687
260 T A 0.2110
261 P A 0.2192
262 L A 0.8212
263 L A 0.9142
264 E A -1.4308
265 A A -1.5467
266 K A -2.8034
267 K A -2.6109
268 L A 0.0000
269 V A -0.1804
270 W A 0.0000
271 P A 0.0000
272 L A 0.0000
273 H A -1.0030
274 L A 0.0000
275 I A 0.0000
276 F A 0.0000
277 A A 0.0000
278 Q A 0.0000
279 P A -0.5716
280 V A -0.6987
281 A A -1.4246
282 D A -2.8420
283 I A -2.1885
284 E A -3.1241
285 N A -2.8319
286 S A -2.1653
287 T A -1.8441
288 S A -1.3915
289 G A -1.9450
290 D A -2.4988
291 P A -1.7692
292 S A -1.4477
293 E A -2.1488
294 F A -0.4105
295 H A -0.8564
296 C A 0.2442
297 L A 0.9051
298 Q A -0.7499
299 D A -1.4484
300 A A -0.4478
301 L A -0.0318
302 D A -1.9698
303 A A -0.3644
304 I A 0.8715
305 D A -1.3641
306 D A -1.4097
307 F A 1.1323
308 I A 0.8804
309 Q A -0.7473
310 L A 0.6095
311 K A -0.9136
312 Q A -0.8259
313 T A 0.1438
314 A A 0.3096
315 A A 0.0583
316 Y A 1.1080
807 P A -0.4800
808 N A -0.6779
809 L A 0.5451
810 S A -0.3184
811 F A -0.5849
812 E A -1.7440
813 S A -1.1622
814 S A 0.0000
815 S A -0.9108
816 S A 0.0000
817 L A 0.0000
818 P A -0.3135
819 F A 0.0000
820 L A 0.0000
821 L A -0.0703
822 R A -1.2521
823 H A -0.7373
824 M A 0.0000
825 P A -0.4636
826 L A 0.0000
827 A A -0.1384
828 S A -0.1773
829 I A 0.0000
830 P A 0.0000
831 D A -0.9315
832 I A -0.3735
833 F A 0.0000
834 I A 0.0000
835 T A -0.8448
836 P A -0.5320
837 T A -0.1780
838 P A -0.2490
839 V A -0.1678
840 V A 0.0000
841 T A -0.3404
842 I A 0.0000
843 S A -2.2562
844 E A -2.9539
845 K A -3.4315
846 E A -3.1892
847 Q A -2.2430
848 D A -2.4504
849 I A 0.0000
850 L A 0.0000
851 D A -1.1171
852 L A -0.7245
853 I A 0.0000
854 A A 0.0000
855 E A -0.7774
856 Q A 0.0000
857 V A 0.0000
858 V A 0.0000
859 T A 0.0000
860 D A 0.0000
861 Y A 0.0000
862 N A -1.1429
863 I A -0.5848
864 L A 0.0000
865 G A -0.7254
866 N A -0.9938
867 L A 0.0000
868 G A -1.4558
869 I A 0.0000
870 P A -1.3078
871 K A -1.7546
872 I A -0.9642
873 A A -1.0323
874 Y A 0.0000
875 R A -1.6988
876 G A -1.0832
877 V A -1.1270
878 K A -2.5165
879 D A -2.9996
880 C A 0.0000
881 Q A -2.9804
882 E A -2.6901
883 G A -1.0936
884 L A -0.0753
885 I A -0.0786
886 T A 0.0000
887 T A -0.2999
888 T A 0.0000
889 M A 0.0000
890 L A 0.6547
891 Q A -0.6512
892 L A -0.2800
893 F A 0.0000
894 S A -0.5125
895 T A -0.6902
896 F A 0.0000
897 D A -2.0107
898 R A -1.7157
899 L A 0.0000
900 N A -1.7334
901 G A 0.0000
902 N A -2.6630
903 D A -2.1958
904 T A 0.0000
905 I A 0.0000
906 S A -1.5969
907 K A -1.5699
908 F A -0.4516
909 Y A -0.3622
910 N A -1.1771
911 M A 0.0000
912 K A -2.0668
913 Q A -1.2269
914 P A 0.0000
915 Y A 0.0364
916 V A 0.0000
917 F A 0.0483
918 V A 0.0000
919 K A -1.7813
920 K A -2.1501
921 H A -2.4468
922 H A -2.4437
923 E A -2.4511
924 L A -0.5576
925 I A -0.2792
926 K A -0.4430
927 V A 0.0764
928 K A -0.4035
929 H A 0.0000
930 D A 0.0000
931 S A 0.1166
932 Q A -0.1995
933 P A -0.2398
934 F A 0.7420
935 I A 0.0000
936 K A -0.2325
937 F A 1.7645
938 L A 1.0489
939 N A -0.8869
940 F A 0.0000
941 R A -1.4075
942 P A 0.0000
943 P A 0.0000
944 N A -0.9710
945 G A -0.2586
946 I A 1.2727
947 K A 0.0000
948 N A 0.2428
949 F A 0.0000
950 K A -0.7444
951 S A 0.0000
952 L A 0.0000
953 L A 0.0000
954 L A 0.0000
955 S A 0.0000
956 S A -0.7173
957 S A -0.7700
958 F A -0.7810
959 K A -1.2300
960 E A -2.3203
961 D A -1.8071
962 C A 0.0000
963 L A -0.6202
964 S A -1.0066
965 F A 0.0000
966 A A 0.0000
967 P A -0.5571
968 T A -0.1983
969 L A 0.0000
970 S A 0.0000
971 Q A -1.3004
972 T A -0.8517
973 Y A 0.0000
974 I A -0.2285
975 N A -1.6879
976 Q A -1.6629
977 E A -1.0525
978 L A 0.0000
979 G A 0.0000
980 F A 1.2189
981 C A 0.0000
982 E A -1.5194
983 L A -0.7265
984 L A 0.0000
985 K A -1.7932
986 L A -1.0066
987 T A -1.6180
988 N A -2.4679
989 E A -2.7056
990 D A -1.7809
991 P A -0.9872
992 P A -1.1465
993 G A 0.0000
994 L A 0.0000
995 M A 0.0000
996 Y A -0.3649
997 L A 0.0000
998 K A -1.9139
999 A A -1.5133
1000 F A -1.7330
1001 D A -3.3288
1002 K A -3.0282
1003 N A -2.5706
1004 K A -2.2062
1005 L A 0.0000
1006 L A -0.6343
1007 L A 0.6106
1008 L A 0.0000
1009 A A 0.0000
1010 A A 0.1101
1011 Q A 0.2332
1012 I A 0.0000
1013 V A -0.3126
1014 S A -0.4627
1015 Y A -0.7873
1016 C A 0.0000
1017 S A -1.2264
1018 N A -2.2417
1019 N A -2.2425
1020 K A -2.9287
1021 N A -2.5687
1022 S A -1.5987
1023 I A -0.7336
1024 K A -2.1055
1025 N A -2.0270
1026 V A -1.2682
1027 P A -0.9205
1028 P A -0.6550
1029 I A 0.0000
1030 L A 0.0000
1031 I A 0.0000
1032 I A 0.0000
1033 L A 0.0000
1034 P A 0.0000
1035 L A 0.0000
1036 D A -2.5273
1037 N A -2.3009
1038 A A -1.2232
1039 T A -0.9925
1040 L A 0.0000
1041 T A -0.6759
1042 E A -1.5166
1043 L A 0.0000
1044 V A 0.0000
1045 D A -2.0392
1046 K A -1.2387
1047 A A 0.0000
1048 N A -1.0945
1049 I A 0.0000
1050 F A 0.0000
1051 Q A -1.2177
1052 V A -0.7771
1053 I A 0.0000
1054 K A -1.4276
1055 N A -1.9780
1056 E A -1.5557
1057 V A 0.0000
1058 C A -1.6036
1059 A A -1.5229
1060 K A -2.0558
1061 M A -1.2928
1062 P A -1.5284
1063 N A -1.6679
1064 I A -1.2796
1065 E A -1.3354
1066 L A 0.0000
1067 Y A -0.1842
1068 L A 0.0000
1069 K A 0.0000
1070 V A 0.0000
1071 I A 0.0000
1072 P A 0.0000
1073 M A 0.0000
1074 D A -2.7818
1075 F A 0.0000
1076 I A 0.0000
1077 R A -2.2496
1078 N A -0.6443
1079 V A 1.5555
1080 L A 2.1600
1081 V A 0.8637
1082 T A 0.8011
1083 V A 0.7569
1084 D A -0.8439
1085 Q A -0.6638
1086 Y A -0.0742
1087 V A 0.0000
1088 N A -0.7290
1089 V A 0.0000
1090 A A 0.0000
1091 I A 0.0000
1092 S A 0.0000
1093 I A 0.0000
1094 Y A 0.0000
1095 N A 0.0000
1096 M A 0.0000
1097 L A 0.0000
1098 P A -0.9834
1099 P A -1.0014
1100 K A -1.6838
1101 S A -1.0339
1102 V A -0.7993
1103 K A -0.9017
1104 F A 0.0000
1105 T A 0.0000
1106 H A -0.1496
1107 I A 0.0000
1108 A A 0.0000
1109 H A -0.2610
1110 T A 0.0308
1111 L A 0.7523
1112 P A -0.7271
1113 E A -2.1122
1114 K A -1.6827
1115 V A 0.4076
1116 N A -0.5226
1117 F A 0.7795
1118 R A -0.8486
1119 T A -0.6179
1120 M A -0.2336
1121 Q A -1.5089
1122 Q A -1.8104
1123 Q A -1.8859
1124 Q A -2.2177
1125 M A -1.8188
1126 Q A -3.0270
1127 Q A -3.2468
1128 Q A -3.5297
1129 Q A -3.7667
1130 Q A -3.8645
1131 Q A -4.0726
1132 Q A -3.9540
1133 Q A -3.8775
1134 Q A -3.9522
1135 Q A -3.5713
1136 Q A -3.2155
1137 N A -3.1717
1138 N A -2.6283
1139 S A -1.3784
1140 T A -1.0287
1141 G A -1.0602
1142 S A -1.3476
1143 S A -0.4123
1144 S A -0.2381
1145 I A 0.9326
1146 I A 0.9926
1147 Y A 0.6507
1148 Y A -0.5590
1149 D A -1.6732
1150 S A -0.7131
1151 Y A -0.3508
1152 I A 0.0000
1153 H A 0.0000
1154 L A 0.0000
1155 A A 0.0000
1156 Y A 0.0000
1157 S A 0.0000
1158 R A -0.2108
1159 S A 0.0000
1160 V A 0.4630
1161 D A 0.0000
1162 K A -1.0549
1163 E A -0.9762
1164 W A 0.0000
1165 V A 0.0000
1166 F A 0.0000
1167 A A 0.0000
1168 A A 0.0000
1169 L A 0.0000
1170 S A 0.0000
1171 D A 0.0000
1172 S A -0.1024
1173 Y A 0.2215
1174 G A 0.0000
1175 Q A -0.5299
1176 G A -0.6073
1177 S A -0.2912
1178 M A -0.1153
1179 T A -0.2449
1180 K A -0.6991
1181 T A 0.0000
1182 W A 0.0000
1183 Y A -0.3223
1184 V A 0.0000
1185 G A -1.3151
1186 N A -2.2525
1187 S A -2.1326
1188 R A -3.2048
1189 G A -2.4196
1190 K A -2.4658
1191 F A 0.0000
1192 D A -2.3495
1193 D A -2.8115
1194 A A 0.0000
1195 C A 0.0000
1196 N A -1.8704
1197 Q A -1.5217
1198 I A 0.0000
1199 W A 0.0000
1200 N A -1.4070
1201 I A -0.6854
1202 A A 0.0000
1203 L A -0.7993
1204 N A -1.6997
1205 L A 0.0000
1206 A A 0.0000
1207 S A -1.1110
1208 K A -1.8797
1209 K A -1.1268
1210 F A 0.4669
1211 G A -0.5924
1212 K A -1.2955
1213 I A -0.6376
1214 C A 0.0000
1215 L A 0.0000
1216 I A 0.0000
1217 L A 0.0000
1218 T A 0.0000
1219 R A 0.0000
1220 L A 0.0000
1221 N A -1.0549
1222 G A 0.0000
1223 I A -0.2384
1224 L A 0.0000
1225 P A -0.8337
1226 D A -1.5074
1227 D A -1.8663
1228 E A 0.0000
1229 L A -0.8865
1230 M A -0.7647
1231 N A -1.4876
1232 W A 0.0000
1233 R A -2.3483
1234 R A -2.5277
1235 L A -1.7034
1236 S A -1.9456
1237 G A -2.3066
1238 R A -2.6327
1239 N A -2.2498
1240 I A -1.1123
1241 H A -0.7736
1242 L A -0.6215
1243 A A 0.0000
1244 V A 0.0000
1245 V A 0.0000
1246 C A 0.0000
1247 V A 0.0000
1248 D A -0.8296
1249 D A -1.1481
1250 N A -1.2639
1251 S A -0.9190
1252 K A -0.7521
1253 I A -0.2865
1254 S A 0.0000
1255 F A 0.0000
1256 I A 0.0000
1257 D A 0.0000
1258 E A -2.1127
1259 D A 0.0000
1260 K A -1.8163
1261 L A 0.4287
1262 Y A 0.0000
1263 P A 0.0000
1264 S A 0.0390
1265 F A 0.3992
1266 K A 0.0000
1267 P A 0.0005
1268 I A 0.3443
1269 Y A -0.2542
1270 K A -1.5998
1271 D A -0.8810
1272 T A -0.4986
1273 R A -1.4303
1274 F A 0.5594
1275 G A -0.3175
1276 G A -1.1517
1277 R A -1.8189
1278 M A -0.5362
1279 D A -0.3362
1280 M A 0.6568
1281 T A -0.0595
1282 R A -0.7355
1283 L A 0.6146
1284 Y A 0.5043
1285 D A -0.8457
1286 Y A -0.0148
1287 E A -0.7534
1288 I A 0.4971
1289 R A -1.0962
1290 D A -0.7213
1291 I A -0.4701
1292 D A -1.2687
1293 Q A 0.0000
1294 D A 0.0000
1295 I A 0.0000
1296 H A 0.0000
1297 G A 0.0000
1298 I A 0.0000
1299 V A 0.0000
1300 F A 0.0000
1301 Q A -1.7841
1302 H A -0.7940
1303 P A 0.0000
1304 F A 0.0000
1305 P A -0.2827
1306 L A 0.0000
1307 A A -0.4261
1308 H A -0.6685
1309 S A -0.5527
1310 Q A -1.0160
1311 H A -1.3452
1312 R A -1.2932
1313 C A 0.0000
1314 A A 0.0000
1315 I A -0.3732
1316 R A -0.4003
1317 S A 0.0000
1318 G A 0.0000
1319 A A 0.0000
1320 L A 0.0000
1321 I A 0.0000
1322 K A 0.0000
1323 F A 0.0000
1324 K A -2.3198
1325 K A -1.4787
1326 C A -1.5847
1327 D A -1.8908
1328 G A -2.0915
1329 D A -2.6692
1330 T A -1.4495
1331 V A -0.6643
1332 W A 0.0000
1333 D A -1.3975
1334 K A 0.0000
1335 F A 0.0000
1336 A A 0.0000
1337 V A 0.0000
1338 N A 0.0000
1339 L A 0.0000
1340 L A 0.0000
1341 N A -0.7896
1342 C A -0.4347
1343 P A -0.0677
1344 H A 0.0000
1345 S A -0.1998
1346 D A -0.8014
1347 S A -0.7195
1348 T A -0.6072
1349 Q A -0.7525
1350 L A 0.0000
1351 L A 0.0000
1352 E A -0.8878
1353 T A -0.8244
1354 I A 0.0000
1355 L A 0.0000
1356 E A -1.8465
1357 E A -0.8821
1358 F A 0.0000
1359 R A 0.0000
1360 N A -0.6297
1361 L A 0.0000
1362 A A 0.0000
1363 A A 0.0000
1364 L A 0.0000
1365 N A 0.0000
1366 V A 0.0000
1367 W A 0.0000
1368 Y A 0.0000
1369 G A 0.0000
1370 L A 0.0000
1371 S A 0.0000
1372 D A -2.5657
1373 G A 0.0000
1374 E A -2.8593
1375 D A -1.8285
1376 G A -1.1979
1377 H A 0.0000
1378 I A 0.0000
1379 P A 0.0000
1380 W A 0.0000
1381 H A 0.0000
1382 I A 0.0000
1383 L A 0.0000
1384 A A 0.0000
1385 V A 0.0000
1386 K A -0.7858
1387 K A -0.6833
1388 M A 0.0000
1389 M A -0.3597
1390 N A -0.9489
1391 T A 0.0000
1392 L A 0.0000
1393 V A 0.0000
1394 H A 0.0000
1395 T A 0.0000
1396 R A -0.8936
1397 V A -0.5439
1398 K A -1.2147
1399 I A -0.3390
1400 A A -0.7906
1401 N A -1.5086
1402 T A -0.8475
1403 S A -0.3670
1404 A A -0.1136
1405 A A 0.0306
1406 T A 0.4664
1407 V A 1.2535
1408 H A -0.1697
1409 T A -0.1378
1410 A A -0.0534
1411 T A -0.4277
1412 S A -0.1458
1413 S A 0.4587
1414 S A 1.3796
1415 I A 3.1833
1416 I A 3.3955
1417 L A 2.2851
1418 S A 0.1324
1419 D A -2.1217
1420 K A -2.4476
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is globular. Max score is recommended for pH analysis.

pH
Average A4D Score
Max A4D Score
4.0 -0.5075 5.2871 View CSV PDB
4.5 -0.5639 4.9492 View CSV PDB
5.0 -0.6307 4.5775 View CSV PDB
5.5 -0.6952 4.3335 View CSV PDB
6.0 -0.744 4.284 View CSV PDB
6.5 -0.7684 4.2343 View CSV PDB
7.0 -0.7692 4.3022 View CSV PDB
7.5 -0.7546 4.4416 View CSV PDB
8.0 -0.7313 4.5874 View CSV PDB
8.5 -0.7003 4.735 View CSV PDB
9.0 -0.6593 4.8822 View CSV PDB