Chain sequence(s) |
A: MASRQNNKQELDERARQGETVVPGGTGGKSLEAQQHLAEGRSKGGQTRKEQLGTEGYQEMGRKGGLSTVEKSGEERAQEEGIGIDESKFRTGNNKNQNQNEDQDK
input PDB |
Selected Chain(s) | A |
Distance of aggregation | 10 Å |
FoldX usage | No |
pH calculations | No |
alphaCutter usage | No |
Dynamic mode | No |
Automated mutations | No |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:00) [INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:00:01) [INFO] Main: Simulation completed successfully. (00:00:01) |
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan4D score | mutation |
---|---|---|---|---|
1 | M | A | 0.6689 | |
2 | A | A | -0.7394 | |
3 | S | A | -1.9624 | |
4 | R | A | -3.6360 | |
5 | Q | A | -4.1283 | |
6 | N | A | -4.1467 | |
7 | N | A | -4.4656 | |
8 | K | A | -5.0060 | |
9 | Q | A | -4.6548 | |
10 | E | A | -4.4164 | |
11 | L | A | -3.4758 | |
12 | D | A | -4.2450 | |
13 | E | A | -4.7622 | |
14 | R | A | -3.9850 | |
15 | A | A | 0.0000 | |
16 | R | A | -4.3947 | |
17 | Q | A | -3.6618 | |
18 | G | A | -3.1674 | |
19 | E | A | -2.8949 | |
20 | T | A | -1.4384 | |
21 | V | A | -0.6774 | |
22 | V | A | 0.2862 | |
23 | P | A | -0.1578 | |
24 | G | A | -0.4717 | |
25 | G | A | -0.4947 | |
26 | T | A | -0.5872 | |
27 | G | A | -0.6572 | |
28 | G | A | -1.8013 | |
29 | K | A | -3.5494 | |
30 | S | A | -2.8877 | |
31 | L | A | -2.6268 | |
32 | E | A | -2.7513 | |
33 | A | A | -1.9663 | |
34 | Q | A | 0.0000 | |
35 | Q | A | -2.3478 | |
36 | H | A | -2.4450 | |
37 | L | A | -1.5491 | |
38 | A | A | -2.1127 | |
39 | E | A | -3.0488 | |
40 | G | A | -2.8771 | |
41 | R | A | -3.2504 | |
42 | S | A | -3.0133 | |
43 | K | A | -3.7322 | |
44 | G | A | -3.3517 | |
45 | G | A | -3.5295 | |
46 | Q | A | -3.9821 | |
47 | T | A | -3.4740 | |
48 | R | A | -3.6412 | |
49 | K | A | -4.1151 | |
50 | E | A | -3.9972 | |
51 | Q | A | -3.4060 | |
52 | L | A | 0.0000 | |
53 | G | A | -2.6822 | |
54 | T | A | -1.8007 | |
55 | E | A | -2.4537 | |
56 | G | A | 0.0000 | |
57 | Y | A | -0.9370 | |
58 | Q | A | -2.0175 | |
59 | E | A | -2.0429 | |
60 | M | A | -1.1294 | |
61 | G | A | -1.5432 | |
62 | R | A | -1.6841 | |
63 | K | A | -1.7709 | |
64 | G | A | -1.4356 | |
65 | G | A | -1.1771 | |
66 | L | A | -1.4388 | |
67 | S | A | -1.3145 | |
68 | T | A | -0.5715 | |
69 | V | A | 0.5660 | |
70 | E | A | -1.7130 | |
71 | K | A | -2.1068 | |
72 | S | A | -1.7969 | |
73 | G | A | 0.0000 | |
74 | E | A | -2.5946 | |
75 | E | A | -4.0394 | |
76 | R | A | -3.6494 | |
77 | A | A | 0.0000 | |
78 | Q | A | -3.6036 | |
79 | E | A | -3.9737 | |
80 | E | A | -3.3222 | |
81 | G | A | -2.3208 | |
82 | I | A | -1.3978 | |
83 | G | A | -1.0903 | |
84 | I | A | -1.0459 | |
85 | D | A | -2.0568 | |
86 | E | A | -1.8529 | |
87 | S | A | -1.8295 | |
88 | K | A | -2.4870 | |
89 | F | A | -1.7805 | |
90 | R | A | -2.6747 | |
91 | T | A | -1.9152 | |
92 | G | A | -2.4521 | |
93 | N | A | -3.1497 | |
94 | N | A | -3.4734 | |
95 | K | A | -3.9775 | |
96 | N | A | -3.8490 | |
97 | Q | A | -3.7578 | |
98 | N | A | -3.7782 | |
99 | Q | A | -3.8188 | |
100 | N | A | -4.0786 | |
101 | E | A | -4.5043 | |
102 | D | A | -4.5795 | |
103 | Q | A | -4.1511 | |
104 | D | A | -3.9889 | |
105 | K | A | -3.0601 |