Project name: 766ae61025bd6d

Status: done

Started: 2026-04-30 04:31:48
Chain sequence(s) A: EWIKFAAACREGEDNSKRNPIAKIHSDCAANQQVTYRISGVGIDQPPYGIFVINQKTGEINITSIVDREVTPFFIIYCRALNSMGQDLERPLELRVRVLDINDNPPVFSMATFAGQIEENSNANTLVMILNATDADEPNNLNSKIAFKIIRQEPSDSPMFIINRNTGEIRTMNNFLDREQYGQYALAVRGSDRDGGADGMSAECECNIKILDVNDNIPYMEQSSYTIEIQENTLNSNLLEIRVIDLDEEFSANWMAVIFFISGNEGNWFEIEMNERTNVGILKVVKPLDYEAMQSLQLSIGVRNKAEFHHSIMSQYKLKASAISVTVLNVIEGPVFRPGSKTYVVTGNMGSNDKVGDFVATDLDTGRPSTTVRYVMGNNPADLLAVDSRTGKLTLKNKVTKEQYNMLGGKYQGTILSIDDNLQRTCTGTININIQSFGNDDRTNTEPNTKITTNTGRQESTSSTNYDTSTTSTDSSQVYSSEPGNGAKDLLSDNVH
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
alphaCutter usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       PDB-Info: The input structure is globular. Max score is recommended for pH analysis.  (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:01)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:07:46)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/766ae61025bd6d/tmp/folded.pdb                 (00:07:46)
[INFO]       Main:     Simulation completed successfully.                                          (00:10:17)
Show buried residues

Minimal score value
-4.1746
Maximal score value
1.8154
Average score
-0.9834
Total score value
-487.7804

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
1 E A -1.8399
2 W A 0.3429
3 I A 1.3500
4 K A 0.5227
5 F A 1.7004
6 A A 0.2482
7 A A -0.4559
8 A A -0.7348
9 C A 0.0000
10 R A -1.5730
11 E A 0.0000
12 G A -1.5565
13 E A -2.2564
14 D A -2.5832
15 N A 0.0000
16 S A -1.9181
17 K A -2.9377
18 R A -2.3227
19 N A -1.6579
20 P A -1.1752
21 I A 0.0000
22 A A 0.0000
23 K A -0.3043
24 I A 0.0000
25 H A -1.4760
26 S A 0.0000
27 D A -2.5794
28 C A -1.5303
29 A A -1.3166
30 A A -1.2345
31 N A -1.8648
32 Q A -1.7284
33 Q A -1.7956
34 V A -1.7433
35 T A -1.8066
36 Y A 0.0000
37 R A -1.7132
38 I A -0.6672
39 S A -0.6109
40 G A 0.0000
41 V A -0.0743
42 G A 0.0000
43 I A -0.0679
44 D A -1.9104
45 Q A -1.6522
46 P A -0.6376
47 P A 0.0100
48 Y A 0.2307
49 G A 0.0611
50 I A 0.0000
51 F A 0.0000
52 V A 1.0203
53 I A -0.5118
54 N A -1.8626
55 Q A -2.3931
56 K A -2.8667
57 T A -1.6585
58 G A 0.0000
59 E A -1.2747
60 I A 0.0000
61 N A -0.5931
62 I A 0.0000
63 T A -0.0975
64 S A 0.1422
65 I A 0.5337
66 V A 0.0000
67 D A -1.1674
68 R A 0.0000
69 E A -1.5546
70 V A 0.5051
71 T A -0.0850
72 P A -0.6261
73 F A -0.3532
74 F A 0.0000
75 I A -0.4139
76 I A 0.0000
77 Y A -0.2187
78 C A 0.0000
79 R A -2.2754
80 A A -2.2257
81 L A -1.5717
82 N A -0.9486
83 S A -0.4876
84 M A 0.2156
85 G A -0.8789
86 Q A -1.8648
87 D A -2.5742
88 L A -2.0339
89 E A -3.2971
90 R A -3.1309
91 P A -1.9343
92 L A -1.4097
93 E A -1.8954
94 L A 0.0000
95 R A -1.9898
96 V A 0.0000
97 R A -1.9820
98 V A 0.0000
99 L A -0.6691
100 D A 0.0000
101 I A -0.9425
102 N A -1.3921
103 D A -2.0687
104 N A -1.4218
105 P A -0.3525
106 P A 0.0000
107 V A 1.3681
108 F A 0.4684
109 S A 0.4267
110 M A 0.9479
111 A A 0.2171
112 T A -0.3961
113 F A 0.0000
114 A A -0.6159
115 G A -0.9802
116 Q A -2.0867
117 I A 0.0000
118 E A -2.2602
119 E A 0.0000
120 N A -1.4605
121 S A -1.5359
122 N A -1.9077
123 A A -1.1507
124 N A -1.4629
125 T A -0.9739
126 L A 0.2019
127 V A -0.1746
128 M A 0.0000
129 I A 0.7019
130 L A 0.0000
131 N A -0.6382
132 A A 0.1096
133 T A -0.0486
134 D A -0.4799
135 A A -0.9824
136 D A 0.0000
137 E A -1.9188
138 P A -1.5971
139 N A -1.8974
140 N A -1.4096
141 L A -0.4373
142 N A 0.0000
143 S A -1.3011
144 K A -1.7708
145 I A -1.0310
146 A A 0.0000
147 F A 0.0000
148 K A -2.4256
149 I A -0.8592
150 I A 0.0819
151 R A -1.0191
152 Q A -1.4327
153 E A -2.4790
154 P A -1.8881
155 S A -1.9644
156 D A -2.2746
157 S A -1.0801
158 P A -0.7351
159 M A -0.0473
160 F A 0.0000
161 I A -0.0063
162 I A -0.8109
163 N A -2.1576
164 R A -3.3320
165 N A -2.8169
166 T A -1.4205
167 G A 0.0000
168 E A -0.5728
169 I A 0.0000
170 R A -0.4029
171 T A 0.0000
172 M A 0.1743
173 N A -0.4009
174 N A -1.0105
175 F A 0.7826
176 L A 0.0000
177 D A -2.3297
178 R A -2.3425
179 E A -2.4530
180 Q A -2.4211
181 Y A -1.8550
182 G A -2.0770
183 Q A -2.4810
184 Y A 0.0000
185 A A -1.6443
186 L A 0.0000
187 A A 0.0000
188 V A 0.0000
189 R A -2.0515
190 G A 0.0000
191 S A 0.0000
192 D A 0.0000
193 R A -1.1798
194 D A -1.6586
195 G A -1.5522
196 G A -1.1107
197 A A -1.0599
198 D A -2.0196
199 G A -1.4965
200 M A -0.7821
201 S A -0.6275
202 A A -0.6183
203 E A -2.0286
204 C A 0.0000
205 E A -1.4598
206 C A 0.0000
207 N A -1.8896
208 I A 0.0000
209 K A -2.5202
210 I A 0.0000
211 L A -1.5770
212 D A -1.6343
213 V A -1.1927
214 N A 0.0000
215 D A -0.7332
216 N A 0.1208
217 I A 0.4985
218 P A 0.0000
219 Y A 0.0405
220 M A 0.0000
221 E A -2.4562
222 Q A -2.2613
223 S A -1.3664
224 S A -0.8544
225 Y A -0.3970
226 T A -0.4614
227 I A -0.6357
228 E A -1.9047
229 I A 0.0000
230 Q A -1.6810
231 E A 0.0000
232 N A -1.8500
233 T A -0.6519
234 L A 0.3791
235 N A -0.5196
236 S A -0.9715
237 N A -1.7389
238 L A -0.9319
239 L A -1.0047
240 E A -2.1781
241 I A 0.0000
242 R A -1.9191
243 V A 0.0000
244 I A 0.3482
245 D A 0.0000
246 L A 0.4222
247 D A 0.0000
248 E A -1.6200
249 E A -2.1278
250 F A -1.0810
251 S A -1.1307
252 A A -1.1927
253 N A -1.2770
254 W A 0.0000
255 M A -1.5189
256 A A 0.0000
257 V A -0.6210
258 I A 0.0000
259 F A 0.4492
260 F A 0.5383
261 I A 1.2523
262 S A -0.0529
263 G A -0.9393
264 N A -1.6035
265 E A -2.2388
266 G A -1.9843
267 N A -2.4277
268 W A -1.5165
269 F A 0.0000
270 E A -2.1430
271 I A 0.0000
272 E A -2.5118
273 M A -1.9050
274 N A -2.3624
275 E A -3.0970
276 R A -2.8635
277 T A -1.7446
278 N A 0.0000
279 V A -1.5197
280 G A 0.0000
281 I A -1.7387
282 L A 0.0000
283 K A -1.4823
284 V A 0.0000
285 V A -0.5061
286 K A -1.9082
287 P A -1.4446
288 L A 0.0000
289 D A -2.5039
290 Y A -1.8794
291 E A -2.4801
292 A A -1.2439
293 M A -0.9567
294 Q A -1.4705
295 S A -0.8954
296 L A -0.7477
297 Q A -1.2730
298 L A 0.0000
299 S A -0.0264
300 I A 0.0000
301 G A 0.0000
302 V A 0.0000
303 R A -1.2324
304 N A 0.0000
305 K A -2.3757
306 A A -1.8398
307 E A -2.5384
308 F A 0.0000
309 H A -1.3398
310 H A -1.4460
311 S A -0.8898
312 I A -0.6639
313 M A -0.7274
314 S A -0.9208
315 Q A -1.3873
316 Y A -1.1561
317 K A -1.9713
318 L A -1.0943
319 K A -1.8669
320 A A -0.5345
321 S A 0.0000
322 A A -0.4178
323 I A 0.0000
324 S A -0.7582
325 V A 0.0000
326 T A -1.2377
327 V A 0.0000
328 L A -0.8570
329 N A -0.9607
330 V A 0.7361
331 I A 1.8154
332 E A -0.0288
333 G A 0.0000
334 P A 0.0000
335 V A 0.0000
336 F A 0.0000
337 R A -2.2137
338 P A -1.7303
339 G A -1.8227
340 S A -1.3129
341 K A -1.4187
342 T A -0.4486
343 Y A 0.3434
344 V A 0.9023
345 V A 0.0000
346 T A -0.6912
347 G A -1.3905
348 N A -1.7431
349 M A -1.7497
350 G A -2.3047
351 S A -2.4169
352 N A -2.7938
353 D A -2.8802
354 K A -2.6781
355 V A -0.9536
356 G A -0.9971
357 D A -1.3402
358 F A 0.0000
359 V A -0.7245
360 A A 0.0000
361 T A -1.3632
362 D A -1.3276
363 L A -1.2940
364 D A -1.3022
365 T A -1.4748
366 G A -1.8865
367 R A -2.3053
368 P A -1.1604
369 S A -1.1504
370 T A -0.8913
371 T A -1.0707
372 V A 0.0000
373 R A -1.6419
374 Y A 0.0000
375 V A 0.1906
376 M A -0.1106
377 G A -0.5621
378 N A -1.7757
379 N A -1.6924
380 P A -1.1957
381 A A -1.0567
382 D A -2.2347
383 L A 0.0000
384 L A 0.0000
385 A A -0.9580
386 V A -0.6528
387 D A -1.1671
388 S A -1.3283
389 R A -2.3072
390 T A -1.4937
391 G A 0.0000
392 K A -1.5796
393 L A 0.0000
394 T A -1.9292
395 L A 0.0000
396 K A -2.6057
397 N A -2.4740
398 K A -2.9156
399 V A 0.0000
400 T A -1.9847
401 K A -2.8762
402 E A -2.8172
403 Q A -1.8981
404 Y A -1.8010
405 N A -2.1014
406 M A -0.5706
407 L A -1.1384
408 G A -1.2811
409 G A -1.6433
410 K A -2.2582
411 Y A 0.0000
412 Q A -2.0029
413 G A 0.0000
414 T A -0.7155
415 I A 0.0000
416 L A 0.3466
417 S A 0.0000
418 I A -1.0993
419 D A 0.0000
420 D A -3.1438
421 N A -2.5664
422 L A -1.6748
423 Q A -2.7080
424 R A -2.3181
425 T A -1.0491
426 C A -0.3105
427 T A 0.0392
428 G A 0.0000
429 T A -0.8662
430 I A 0.0000
431 N A -1.1925
432 I A 0.0000
433 N A -1.0739
434 I A 0.0000
435 Q A -1.2248
436 S A -1.0091
437 F A -1.2150
438 G A -1.9744
439 N A -3.1218
440 D A -3.9047
441 D A -4.1746
442 R A -3.8025
443 T A -2.4953
444 N A -2.4766
445 T A -1.9226
446 E A -2.6166
447 P A -2.0041
448 N A -2.2490
449 T A -1.3930
450 K A -1.0758
451 I A 1.1391
452 T A 0.3555
453 T A -0.3306
454 N A -1.4617
455 T A -1.3364
456 G A -1.9063
457 R A -3.0544
458 Q A -3.1929
459 E A -2.9858
460 S A -1.5850
461 T A -0.7100
462 S A -0.4129
463 S A -0.6456
464 T A -0.5670
465 N A -1.0720
466 Y A -0.2332
467 D A -1.5147
468 T A -0.8290
469 S A -0.6925
470 T A -0.2754
471 T A -0.2766
472 S A -0.6757
473 T A -1.2241
474 D A -2.0183
475 S A -1.4570
476 S A -0.8929
477 Q A -0.1982
478 V A 1.7405
479 Y A 1.7605
480 S A 0.3315
481 S A -1.0093
482 E A -2.3344
483 P A -1.7568
484 G A -1.7847
485 N A -2.1458
486 G A -1.8360
487 A A -1.6161
488 K A -2.2277
489 D A -1.5106
490 L A 0.7265
491 L A 0.8763
492 S A -0.2269
493 D A -1.5835
494 N A -1.4358
495 V A -0.0536
496 H A -0.8954
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is globular. Max score is recommended for pH analysis.

pH
Average A4D Score
Max A4D Score
4.0 -0.7187 3.6378 View CSV PDB
4.5 -0.8039 3.5562 View CSV PDB
5.0 -0.9083 3.5157 View CSV PDB
5.5 -1.0154 3.5369 View CSV PDB
6.0 -1.1078 3.5882 View CSV PDB
6.5 -1.1721 3.6824 View CSV PDB
7.0 -1.2056 3.8124 View CSV PDB
7.5 -1.2169 3.9608 View CSV PDB
8.0 -1.2147 4.1164 View CSV PDB
8.5 -1.2015 4.274 View CSV PDB
9.0 -1.176 4.4311 View CSV PDB