Project name: 77266291e267bc4

Status: done

Started: 2026-05-17 19:24:55
Chain sequence(s) A: MAEQPWDLRRVLDEIKDDPKNYHETDVEVDPNAELSGVYRYIGAGGTVQRPTQEGPAMMFNNVKGFPDTRVLTGLMASRRRVGKMFHHDYQTLGQYLNEAVSNPVAPETVAEADAPAHDVVYKATDEGFDIRKLVAAPTNTPQDAGPYITVGVVFGSSMDKSKSDVTIHRMVLEDKDKLGIYIMPGGRHIGAFAEEYEKANKPMPITINIGLDPAITIGATFEPPTTPFGYNELGVAGAIRNQAVQLVDGVTVDEKAIARSEYTLEGYIMPNERIQEDINTHTGKAMPEFPGYDGDANPALQVIKVTAVTHRKNAIMQSVIGPSEEHVSMAGIPTEASILQLVNRAIPGKVTNVYNPPAGGGKLMTIMQIHKDNEADEGIQRQAALLAFSAFKELKTVILVDEDVDIFDMNDVIWTMNTRFQADQDLMVLSGMRNHPLDPSERPQYDPKSIRFRGMSSKLVIDGTVPFDMKDQFERAQFMKVADWEKYLK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
alphaCutter usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       PDB-Info: The input structure is globular. Max score is recommended for pH analysis.  (00:00:05)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:05)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:12:35)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/77266291e267bc4/tmp/folded.pdb                (00:12:35)
[INFO]       Main:     Simulation completed successfully.                                          (00:20:50)
Show buried residues

Minimal score value
-3.7984
Maximal score value
2.2557
Average score
-0.7243
Total score value
-354.9007

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
1 M A 0.3791
2 A A -0.6326
3 E A -2.1023
4 Q A -1.9530
5 P A -1.2462
6 W A -0.8403
7 D A -0.6635
8 L A 0.0000
9 R A -1.4985
10 R A -1.6941
11 V A 0.0000
12 L A 0.0000
13 D A -3.3988
14 E A -3.0816
15 I A 0.0000
16 K A -3.7984
17 D A -3.5471
18 D A -2.5400
19 P A -2.2549
20 K A -2.6798
21 N A 0.0000
22 Y A 0.0000
23 H A -1.9798
24 E A -1.3468
25 T A -1.1776
26 D A -1.8009
27 V A -0.3534
28 E A -2.1948
29 V A 0.0000
30 D A -2.2759
31 P A 0.0000
32 N A -2.0621
33 A A -1.4123
34 E A -1.7534
35 L A 0.0000
36 S A 0.0000
37 G A -0.3498
38 V A 0.6122
39 Y A 0.0000
40 R A -0.5012
41 Y A 0.5798
42 I A 0.4977
43 G A 0.0000
44 A A 0.0000
45 G A 0.0000
46 G A 0.0000
47 T A -0.5356
48 V A 0.0000
49 Q A -2.0808
50 R A -2.6380
51 P A -1.6009
52 T A -1.5871
53 Q A -2.2455
54 E A -2.4653
55 G A -1.5143
56 P A -1.4144
57 A A 0.0000
58 M A 0.0000
59 M A 0.0000
60 F A 0.0000
61 N A -2.0099
62 N A -2.3358
63 V A 0.0000
64 K A -2.4778
65 G A -1.9350
66 F A -1.5945
67 P A -1.8863
68 D A -2.7669
69 T A 0.0000
70 R A -1.5072
71 V A 0.0000
72 L A 0.0000
73 T A 0.0000
74 G A 0.0000
75 L A 0.0000
76 M A 0.0000
77 A A 0.0000
78 S A -1.4840
79 R A -1.6137
80 R A -2.4466
81 R A 0.0000
82 V A 0.0000
83 G A 0.0000
84 K A -2.2928
85 M A 0.0000
86 F A 0.0000
87 H A -1.7547
88 H A -1.8244
89 D A -2.1291
90 Y A -1.6190
91 Q A -1.2392
92 T A -0.7657
93 L A 0.0000
94 G A 0.0000
95 Q A -1.2221
96 Y A -1.0148
97 L A 0.0000
98 N A -1.6074
99 E A -2.4840
100 A A 0.0000
101 V A 0.0000
102 S A -1.5178
103 N A -1.8176
104 P A -0.9637
105 V A -0.2945
106 A A -0.2408
107 P A -0.5957
108 E A -1.1830
109 T A -1.2518
110 V A -1.0417
111 A A -1.3143
112 E A -2.4647
113 A A -1.4191
114 D A -1.6183
115 A A 0.0000
116 P A -1.3032
117 A A 0.0000
118 H A 0.0000
119 D A -1.5604
120 V A -0.3846
121 V A 0.7423
122 Y A -0.0065
123 K A -0.9877
124 A A -1.3905
125 T A -1.3815
126 D A -2.4839
127 E A -2.7450
128 G A -1.9724
129 F A 0.0000
130 D A 0.0000
131 I A 0.0000
132 R A -2.2161
133 K A -2.2442
134 L A -0.8823
135 V A 0.0000
136 A A 0.0000
137 A A 0.0000
138 P A 0.0000
139 T A 0.0000
140 N A 0.0000
141 T A -0.9465
142 P A -0.9628
143 Q A -1.1184
144 D A 0.0000
145 A A 0.0000
146 G A 0.0000
147 P A -0.4594
148 Y A 0.0000
149 I A 0.0000
150 T A 0.0000
151 V A 0.0000
152 G A 0.0000
153 V A 0.0000
154 V A 0.0000
155 F A 0.0000
156 G A 0.0000
157 S A 0.0000
158 S A 0.0000
159 M A -1.2683
160 D A -2.1923
161 K A -1.8843
162 S A -1.5125
163 K A -1.2034
164 S A -0.5220
165 D A 0.0000
166 V A 0.0000
167 T A 0.0000
168 I A 0.3279
169 H A 0.0000
170 R A -0.0993
171 M A 0.0000
172 V A 0.0000
173 L A 0.0000
174 E A 0.0000
175 D A -2.5362
176 K A -2.5477
177 D A -1.9941
178 K A -1.7839
179 L A 0.0000
180 G A 0.0000
181 I A 0.0000
182 Y A 0.3403
183 I A 0.0000
184 M A 0.2291
185 P A -0.6040
186 G A -0.9596
187 G A -0.7912
188 R A -0.5295
189 H A 0.0000
190 I A 0.0000
191 G A -0.8796
192 A A -0.9070
193 F A 0.0000
194 A A -1.6730
195 E A -3.2083
196 E A -2.7501
197 Y A 0.0000
198 E A -3.5952
199 K A -3.5493
200 A A -2.5578
201 N A -3.3641
202 K A -2.9275
203 P A -1.4103
204 M A 0.0000
205 P A 0.0000
206 I A 0.0000
207 T A 0.0000
208 I A 0.0000
209 N A 0.0000
210 I A 0.0000
211 G A 0.0000
212 L A 0.0000
213 D A 0.0000
214 P A 0.0000
215 A A 0.0000
216 I A 0.0000
217 T A 0.0000
218 I A 0.0000
219 G A 0.0000
220 A A 0.0000
221 T A 0.0117
222 F A 0.0000
223 E A -0.3411
224 P A -0.4668
225 P A -0.2020
226 T A 0.0000
227 T A 0.0000
228 P A 0.4035
229 F A 1.4249
230 G A 0.3174
231 Y A 0.2445
232 N A -0.1332
233 E A 0.0000
234 L A 0.0000
235 G A 0.0000
236 V A 0.0000
237 A A 0.0000
238 G A 0.0000
239 A A -1.0241
240 I A 0.0000
241 R A -0.9240
242 N A -1.4159
243 Q A -1.2318
244 A A -0.6775
245 V A 0.0000
246 Q A -0.8358
247 L A 0.0000
248 V A 0.0000
249 D A -2.5205
250 G A -1.4756
251 V A -0.4071
252 T A -0.4926
253 V A 0.0000
254 D A -2.1306
255 E A 0.0000
256 K A -1.5473
257 A A 0.0000
258 I A 0.0000
259 A A 0.0000
260 R A -0.6205
261 S A 0.0000
262 E A 0.0000
263 Y A 0.0000
264 T A 0.0000
265 L A 0.0000
266 E A 0.0000
267 G A 0.0000
268 Y A -0.4566
269 I A 0.0000
270 M A -1.5635
271 P A -2.8686
272 N A -3.1637
273 E A -2.5246
274 R A -2.0595
275 I A -0.7613
276 Q A -0.7709
277 E A 0.0000
278 D A 0.0000
279 I A 0.2106
280 N A -1.1527
281 T A -1.0090
282 H A -1.3530
283 T A -1.3209
284 G A -1.6629
285 K A -2.0688
286 A A 0.0000
287 M A 0.0000
288 P A 0.0000
289 E A 0.0000
290 F A 0.0000
291 P A 0.1151
292 G A 0.0012
293 Y A 0.4624
294 D A -0.8710
295 G A 0.0000
296 D A -2.2345
297 A A -1.6006
298 N A -0.9873
299 P A -0.7818
300 A A -0.8172
301 L A 0.0000
302 Q A -1.1079
303 V A 0.0000
304 I A 0.0000
305 K A -1.3593
306 V A 0.0000
307 T A -0.4029
308 A A 0.0000
309 V A 0.0000
310 T A 0.0000
311 H A -0.6936
312 R A 0.0000
313 K A -2.8533
314 N A -2.7785
315 A A 0.0000
316 I A 0.0000
317 M A 0.0000
318 Q A 0.0000
319 S A 0.0000
320 V A 0.0000
321 I A 0.0000
322 G A 0.0000
323 P A 0.0000
324 S A 0.0000
325 E A -0.8297
326 E A 0.0000
327 H A -0.2418
328 V A 0.0000
329 S A 0.0000
330 M A 0.0000
331 A A 0.0000
332 G A 0.0000
333 I A 0.0000
334 P A 0.0000
335 T A 0.0000
336 E A 0.0000
337 A A 0.0000
338 S A 0.0000
339 I A 0.0000
340 L A 0.0000
341 Q A -1.4270
342 L A -0.7288
343 V A 0.0000
344 N A -2.3226
345 R A -2.4443
346 A A -1.2772
347 I A -0.9393
348 P A -1.4902
349 G A -1.4483
350 K A -1.0389
351 V A 0.0000
352 T A -0.9496
353 N A -0.6953
354 V A 0.0000
355 Y A 0.0000
356 N A 0.0000
357 P A 0.0000
358 P A -0.0744
359 A A 0.0321
360 G A 0.0000
361 G A 0.0000
362 G A 0.0000
363 K A -0.6055
364 L A -0.4458
365 M A -0.0133
366 T A 0.0000
367 I A 0.0000
368 M A 0.0000
369 Q A -1.1378
370 I A 0.0000
371 H A -1.6770
372 K A 0.0000
373 D A -2.9821
374 N A -3.3785
375 E A -3.3828
376 A A -1.7659
377 D A 0.0000
378 E A -2.4020
379 G A -1.1611
380 I A -0.5772
381 Q A 0.0000
382 R A -1.0104
383 Q A -0.8842
384 A A 0.0000
385 A A 0.0000
386 L A 0.1860
387 L A 0.0388
388 A A 0.0000
389 F A 0.0000
390 S A -0.4521
391 A A 0.0000
392 F A 0.0000
393 K A -2.4971
394 E A -1.9534
395 L A 0.0000
396 K A -0.7816
397 T A 0.1977
398 V A 0.0000
399 I A 0.0000
400 L A 0.0000
401 V A 0.0000
402 D A -1.5519
403 E A -2.3770
404 D A -2.4553
405 V A 0.0000
406 D A -2.1794
407 I A 0.0000
408 F A -0.6437
409 D A -1.2722
410 M A -0.6039
411 N A -1.2128
412 D A -1.0152
413 V A 0.0000
414 I A 0.4306
415 W A -0.0135
416 T A 0.0000
417 M A -0.0906
418 N A -0.9705
419 T A -0.4134
420 R A 0.0000
421 F A -0.8451
422 Q A -2.0112
423 A A -1.5588
424 D A -2.5064
425 Q A -2.2287
426 D A -1.1802
427 L A 0.3342
428 M A 1.0465
429 V A 2.2557
430 L A 1.2175
431 S A 0.0386
432 G A -0.6635
433 M A -1.1466
434 R A -2.2562
435 N A 0.0000
436 H A -1.3361
437 P A -0.8729
438 L A -0.4467
439 D A -0.4307
440 P A -0.2873
441 S A -0.5411
442 E A 0.0000
443 R A -1.7600
444 P A -1.6853
445 Q A -1.5191
446 Y A -0.0517
447 D A -1.2166
448 P A -1.6393
449 K A -2.3148
450 S A -1.2801
451 I A 0.0000
452 R A -2.0288
453 F A -0.5006
454 R A -2.0426
455 G A 0.0000
456 M A -1.4478
457 S A 0.0000
458 S A 0.1969
459 K A 0.0000
460 L A 1.2593
461 V A 0.0000
462 I A 0.5159
463 D A 0.0000
464 G A 0.0000
465 T A 0.0000
466 V A 0.0000
467 P A -1.1989
468 F A -2.2379
469 D A -2.7576
470 M A -1.6771
471 K A -2.4786
472 D A -3.2832
473 Q A -2.7306
474 F A -1.7921
475 E A -3.1324
476 R A -1.8385
477 A A -0.5410
478 Q A -0.6578
479 F A 1.4582
480 M A 1.0552
481 K A -0.6474
482 V A -0.1063
483 A A -0.9429
484 D A -1.9322
485 W A -0.3617
486 E A -1.6473
487 K A -1.4343
488 Y A 0.4437
489 L A 0.6222
490 K A -1.1978
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is globular. Max score is recommended for pH analysis.

pH
Average A4D Score
Max A4D Score
4.0 -0.3983 5.1386 View CSV PDB
4.5 -0.4701 5.1362 View CSV PDB
5.0 -0.5545 5.1329 View CSV PDB
5.5 -0.6385 5.1306 View CSV PDB
6.0 -0.7087 5.1325 View CSV PDB
6.5 -0.755 5.143 View CSV PDB
7.0 -0.7775 5.1633 View CSV PDB
7.5 -0.7845 5.1905 View CSV PDB
8.0 -0.7818 5.2208 View CSV PDB
8.5 -0.7698 5.2523 View CSV PDB
9.0 -0.7465 5.2839 View CSV PDB