Project name: 7bac1df54768627

Status: done

Started: 2026-07-12 02:32:24
Chain sequence(s) A: QVQLVQSGAEVKKPGASVKVSCKASGYTFTRYTMHWVRQAPGQGLEWMGYINPSRGYTNYNQKFKDRVTMTRDKSTSTVYMELSSLRSEDTAVYYCARYYDDHYCLDYWGQGTLVTVSSGGGGSGGGGSGGGGSDLVLTQSPATLSLSPGERATLSCSASSSVSYMNWYQQKPGQAPRLLIYDTSKLASGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQWSSNPFTFGQGTKLEIKGGGGSDIQMSQSPASLSASVGETVTITCRASGNIYNYLAWYQQKQGKSPHLLVYDAKTLADGVPSRFSGSGSGTQYSLKISSLQTEDSGNYYCQHFWSLPFTFGSGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGAELVRPGALVKLSCKTSGFNIKDYFLHWVRQRPDQGLEWIGWINPDNGNTVYDPKFQGTASLTADTSSNTVYLQLSGLTSEDTAVYFCTRRDYTYEKAALDYWGQGTTVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
alphaCutter usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       PDB-Info: The input structure is globular. Max score is recommended for pH analysis.  (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:02)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:05:17)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/7bac1df54768627/tmp/folded.pdb                (00:05:17)
[INFO]       Main:     Simulation completed successfully.                                          (00:07:15)
Show buried residues

Minimal score value
-3.6135
Maximal score value
1.4021
Average score
-0.7245
Total score value
-353.5637

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
1 Q A -1.5086
2 V A -0.9785
3 Q A -1.2884
4 L A 0.0000
5 V A -0.1226
6 Q A 0.0000
7 S A -0.6443
8 G A -0.7076
9 A A -0.2330
10 E A -0.1722
11 V A 0.8871
12 K A -0.9490
13 K A -2.1945
14 P A -2.1905
15 G A -1.4623
16 A A -1.1748
17 S A -1.3675
18 V A 0.0000
19 K A -2.1343
20 V A 0.0000
21 S A -0.8201
22 C A 0.0000
23 K A -1.4275
24 A A 0.0000
25 S A -1.0159
26 G A -1.0490
27 Y A -0.6532
28 T A -0.6016
29 F A 0.0000
30 T A -1.5093
31 R A -1.9908
32 Y A -1.0419
33 T A -0.6671
34 M A 0.0000
35 H A 0.0000
36 W A 0.0000
37 V A 0.0000
38 R A 0.0000
39 Q A -0.7107
40 A A -1.0988
41 P A -1.1131
42 G A -1.2104
43 Q A -1.8498
44 G A -1.3082
45 L A 0.0000
46 E A -0.7259
47 W A 0.0000
48 M A 0.0000
49 G A 0.0000
50 Y A 0.1866
51 I A 0.0000
52 N A -0.8117
53 P A 0.0000
54 S A -1.6181
55 R A -1.7364
56 G A -0.9069
57 Y A 0.2617
58 T A 0.0578
59 N A -0.6915
60 Y A -1.5896
61 N A -2.1194
62 Q A -3.2690
63 K A -3.1848
64 F A 0.0000
65 K A -3.6135
66 D A -3.2909
67 R A -2.3176
68 V A 0.0000
69 T A -1.2846
70 M A 0.0000
71 T A -0.4405
72 R A -1.6191
73 D A -1.7817
74 K A -2.0055
75 S A -1.1828
76 T A -1.1553
77 S A -1.3568
78 T A 0.0000
79 V A 0.0000
80 Y A -0.8815
81 M A 0.0000
82 E A -1.7935
83 L A 0.0000
84 S A -1.3366
85 S A -1.2054
86 L A 0.0000
87 R A -2.7627
88 S A -2.3868
89 E A -2.6778
90 D A 0.0000
91 T A -0.9024
92 A A 0.0000
93 V A 0.0000
94 Y A 0.0000
95 Y A 0.0000
96 C A 0.0000
97 A A 0.0000
98 R A 0.0000
99 Y A 0.0000
100 Y A -1.1920
101 D A -2.5738
102 D A -2.5078
103 H A -1.5194
104 Y A -0.5013
105 C A 0.0000
106 L A 0.0000
107 D A -0.3172
108 Y A 0.0171
109 W A -0.0872
110 G A 0.0000
111 Q A -0.2695
112 G A 0.0000
113 T A 0.0000
114 L A 0.1094
115 V A 0.0000
116 T A -0.3271
117 V A 0.0000
118 S A -1.0787
119 S A -1.6095
120 G A -1.2671
121 G A -1.1092
122 G A -1.1060
123 G A -1.1386
124 S A -0.9659
125 G A -1.2806
126 G A -1.4312
127 G A -1.3606
128 G A -1.3725
129 S A -1.0325
130 G A -1.1688
131 G A -1.5739
132 G A -1.2348
133 G A -1.3376
134 S A -0.6745
135 D A -0.7567
136 L A 0.2355
137 V A 1.4021
138 L A 0.0000
139 T A -0.1889
140 Q A 0.0000
141 S A -0.4830
142 P A -0.3521
143 A A -0.4725
144 T A -0.5647
145 L A -0.5332
146 S A -1.2388
147 L A -1.2876
148 S A -1.5226
149 P A -1.3497
150 G A -1.5084
151 E A -1.9676
152 R A -2.4726
153 A A 0.0000
154 T A -0.6251
155 L A 0.0000
156 S A -0.6283
157 C A 0.0000
158 S A -0.7718
159 A A 0.0000
160 S A -0.0916
161 S A -0.3879
162 S A -0.7039
163 V A 0.0000
164 S A -0.0980
165 Y A 0.4313
166 M A 0.0000
167 N A 0.0000
168 W A 0.0000
169 Y A 0.0000
170 Q A 0.0000
171 Q A 0.0000
172 K A -0.9128
173 P A -0.4349
174 G A -0.4293
175 Q A -0.7599
176 A A -0.5677
177 P A 0.0000
178 R A -1.2978
179 L A 0.0000
180 L A 0.0000
181 I A 0.0000
182 Y A -0.1843
183 D A -0.2310
184 T A 0.0000
185 S A -0.8237
186 K A -1.3233
187 L A -0.3273
188 A A -0.5121
189 S A -0.5030
190 G A -0.4966
191 I A 0.0000
192 P A -0.2167
193 A A -0.1073
194 R A -0.6244
195 F A 0.0000
196 S A -0.4851
197 G A 0.0000
198 S A -0.8812
199 G A -1.0656
200 S A -0.9634
201 G A -0.9453
202 T A -1.2468
203 D A -2.1698
204 F A 0.0000
205 T A -0.7196
206 L A 0.0000
207 T A -0.6006
208 I A 0.0000
209 S A -1.2675
210 S A -1.5403
211 L A 0.0000
212 E A -1.6655
213 P A -1.0197
214 E A -1.1888
215 D A 0.0000
216 F A -0.6404
217 A A 0.0000
218 V A -0.4249
219 Y A 0.0000
220 Y A 0.0000
221 C A 0.0000
222 Q A 0.0000
223 Q A 0.0000
224 W A 0.1065
225 S A -0.1596
226 S A -0.8059
227 N A -1.5444
228 P A 0.0000
229 F A -0.1855
230 T A -0.0171
231 F A 0.0000
232 G A 0.0000
233 Q A -1.2833
234 G A 0.0000
235 T A 0.0000
236 K A -1.2051
237 L A 0.0000
238 E A -1.3224
239 I A 0.0000
240 K A -2.2711
241 G A -1.8426
242 G A -1.6939
243 G A -1.6628
244 G A -1.1894
245 S A -1.4885
246 D A -1.9070
247 I A 0.0000
248 Q A -1.9673
249 M A 0.0000
250 S A -1.2670
251 Q A 0.0000
252 S A -0.6274
253 P A -0.4181
254 A A -0.5128
255 S A -1.0219
256 L A -0.7982
257 S A -1.3513
258 A A 0.0000
259 S A -1.0994
260 V A -0.2225
261 G A -0.7863
262 E A -1.5013
263 T A -1.1036
264 V A 0.0000
265 T A -0.6392
266 I A 0.0000
267 T A -0.9129
268 C A 0.0000
269 R A -2.4485
270 A A 0.0000
271 S A -1.6162
272 G A -1.5842
273 N A -1.4652
274 I A 0.0000
275 Y A -0.4433
276 N A -1.0097
277 Y A -0.4566
278 L A 0.0000
279 A A 0.0000
280 W A 0.0000
281 Y A 0.0000
282 Q A 0.0000
283 Q A 0.0000
284 K A -2.2894
285 Q A -2.2733
286 G A -2.0746
287 K A -2.7971
288 S A -1.6128
289 P A 0.0000
290 H A -0.9197
291 L A 0.0000
292 L A 0.0000
293 V A 0.0000
294 Y A -0.6552
295 D A -1.4796
296 A A 0.0000
297 K A -1.9786
298 T A -1.1179
299 L A -0.6176
300 A A -1.1721
301 D A -1.9472
302 G A -1.3115
303 V A 0.0000
304 P A -0.6233
305 S A -0.4413
306 R A -0.8636
307 F A 0.0000
308 S A -1.1004
309 G A -1.2785
310 S A -1.4063
311 G A -1.2980
312 S A -1.2345
313 G A -0.9986
314 T A -1.5181
315 Q A -2.0914
316 Y A 0.0000
317 S A -1.1989
318 L A 0.0000
319 K A -1.4620
320 I A 0.0000
321 S A -1.0686
322 S A -0.8639
323 L A 0.0000
324 Q A -1.1039
325 T A -1.7198
326 E A -2.2052
327 D A 0.0000
328 S A -2.0645
329 G A -1.9142
330 N A -1.4066
331 Y A 0.0000
332 Y A 0.0000
333 C A 0.0000
334 Q A 0.0000
335 H A 0.0000
336 F A 0.0000
337 W A 0.0000
338 S A -0.0572
339 L A 0.2989
340 P A 0.0000
341 F A 0.0000
342 T A -0.6018
343 F A 0.0000
344 G A 0.0000
345 S A -0.9068
346 G A -0.8223
347 T A 0.0000
348 K A -1.9462
349 L A 0.0000
350 E A -2.8080
351 I A -2.0347
352 K A -2.2267
353 G A -1.5401
354 G A -1.6879
355 G A -1.2737
356 G A -1.3066
357 S A -1.2298
358 G A -1.5862
359 G A -1.4963
360 G A -1.3476
361 G A -1.1367
362 S A -1.0203
363 G A -1.3632
364 G A -1.4364
365 G A -1.4174
366 G A -1.5058
367 S A -1.5271
368 E A -2.2663
369 V A -1.2020
370 Q A -1.6609
371 L A 0.0000
372 Q A -2.0549
373 Q A 0.0000
374 S A -1.0988
375 G A -0.9388
376 A A -0.1881
377 E A -0.2748
378 L A 0.8560
379 V A -0.0696
380 R A -1.6032
381 P A -1.4605
382 G A -0.8841
383 A A -0.0343
384 L A 0.6685
385 V A 0.0000
386 K A -1.2822
387 L A 0.0000
388 S A -0.8386
389 C A 0.0000
390 K A -1.7490
391 T A 0.0000
392 S A -1.3304
393 G A -1.2148
394 F A -0.8969
395 N A -1.2837
396 I A 0.0000
397 K A -1.5033
398 D A -1.3140
399 Y A -0.4968
400 F A 0.0000
401 L A 0.0000
402 H A 0.0000
403 W A 0.0000
404 V A 0.0000
405 R A 0.0000
406 Q A -0.9538
407 R A -1.6744
408 P A -1.7917
409 D A -2.6145
410 Q A -2.4327
411 G A -1.4157
412 L A 0.0000
413 E A -0.6868
414 W A 0.0000
415 I A 0.0000
416 G A 0.0000
417 W A 0.0000
418 I A 0.0000
419 N A 0.0000
420 P A 0.0000
421 D A -1.0810
422 N A 0.0000
423 G A -0.5636
424 N A -0.2994
425 T A 0.0269
426 V A 0.1688
427 Y A -0.4441
428 D A -1.1051
429 P A -1.6479
430 K A -2.2926
431 F A 0.0000
432 Q A -2.0085
433 G A -1.4161
434 T A -0.9567
435 A A 0.0000
436 S A -0.7110
437 L A 0.0000
438 T A -0.2694
439 A A -0.7459
440 D A -1.1236
441 T A -1.1683
442 S A -0.6413
443 S A -0.8413
444 N A -1.2814
445 T A 0.0000
446 V A 0.0000
447 Y A -0.5082
448 L A 0.0000
449 Q A -0.7339
450 L A 0.0000
451 S A -0.2060
452 G A -0.6709
453 L A 0.0000
454 T A -1.4099
455 S A -1.5130
456 E A -2.0238
457 D A -1.2533
458 T A -0.7172
459 A A 0.0000
460 V A 0.0878
461 Y A 0.0000
462 F A 0.0000
463 C A 0.0000
464 T A 0.0000
465 R A 0.0000
466 R A 0.0000
467 D A -0.6049
468 Y A -0.0938
469 T A -0.3352
470 Y A -0.3563
471 E A -1.7229
472 K A -1.0903
473 A A 0.0000
474 A A 0.0000
475 L A 0.0000
476 D A -0.3835
477 Y A 0.0581
478 W A -0.5754
479 G A 0.0000
480 Q A -1.9441
481 G A -1.0629
482 T A 0.0000
483 T A -0.0646
484 V A 0.0000
485 T A -0.1647
486 V A 0.0000
487 S A -0.6102
488 S A -0.8848
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is globular. Max score is recommended for pH analysis.

pH
Average A4D Score
Max A4D Score
4.0 -0.7146 1.4229 View CSV PDB
4.5 -0.7518 1.3895 View CSV PDB
5.0 -0.796 1.3435 View CSV PDB
5.5 -0.8389 1.2928 View CSV PDB
6.0 -0.8708 1.2451 View CSV PDB
6.5 -0.8842 1.2084 View CSV PDB
7.0 -0.8789 1.2417 View CSV PDB
7.5 -0.8612 1.2948 View CSV PDB
8.0 -0.8364 1.348 View CSV PDB
8.5 -0.8064 1.4004 View CSV PDB
9.0 -0.7709 1.45 View CSV PDB