Chain sequence(s) |
D: TSSSTKKTQLQLEHLLKDLQMILNGINNYKNPKLTRMLTFKFYMPKKATELKHLQCLEEELKPLEEVLNLAQSKNFHLRPRDLISNINVIVLELKGSETTFMCEYADETATIVEFLNRWITFAQSIISTLT
input PDB |
Selected Chain(s) | D |
Distance of aggregation | 10 Å |
FoldX usage | Yes |
pH calculations | No |
alphaCutter usage | No |
Dynamic mode | No |
Automated mutations | No |
Mutated residues | LE12D |
Energy difference between WT (input) and mutated protein (by FoldX) | 0.251493 kcal/mol |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:01) [INFO] runJob: Starting aggrescan3d job on: input.pdb with D chain(s) selected (00:00:01) [INFO] runJob: Creating pdb object from: input.pdb (00:00:01) [INFO] FoldX: Starting FoldX energy minimization (00:00:01) [INFO] FoldX: Building mutant model (00:01:27) [INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:01:45) [INFO] Main: Simulation completed successfully. (00:01:46) |
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan4D score | mutation |
---|---|---|---|---|
3 | T | D | -0.7039 | |
4 | S | D | -1.0767 | |
5 | S | D | -1.4986 | |
6 | S | D | -1.6899 | |
7 | T | D | -1.7340 | |
8 | K | D | -2.9364 | |
9 | K | D | -3.2141 | |
10 | T | D | -2.3873 | |
11 | Q | D | -2.3444 | |
12 | E | D | -2.8506 | mutated: LE12D |
13 | Q | D | -2.4532 | |
14 | L | D | 0.0000 | |
15 | E | D | -2.6776 | |
16 | H | D | -2.5368 | |
17 | L | D | 0.0000 | |
18 | L | D | 0.0000 | |
19 | K | D | -2.3266 | |
20 | D | D | -1.3951 | |
21 | L | D | 0.0000 | |
22 | Q | D | -1.3290 | |
23 | M | D | -0.6599 | |
24 | I | D | 0.0000 | |
25 | L | D | -1.0673 | |
26 | N | D | -1.4255 | |
27 | G | D | 0.0000 | |
28 | I | D | 0.0000 | |
29 | N | D | -1.3648 | |
30 | N | D | -1.1194 | |
31 | Y | D | 0.0365 | |
32 | K | D | -1.5730 | |
33 | N | D | 0.0000 | |
34 | P | D | -1.1924 | |
35 | K | D | -1.5294 | |
36 | L | D | -0.9499 | |
37 | T | D | -1.0244 | |
38 | R | D | -1.7534 | |
39 | M | D | 0.0000 | |
40 | L | D | -0.3911 | |
41 | T | D | -0.4888 | |
42 | F | D | -0.4363 | |
43 | K | D | -1.2784 | |
44 | F | D | 0.0000 | |
45 | Y | D | -0.3772 | |
46 | M | D | 0.0000 | |
47 | P | D | 0.0000 | |
48 | K | D | -3.0675 | |
49 | K | D | -2.9076 | |
50 | A | D | -2.1273 | |
51 | T | D | -1.5713 | |
52 | E | D | -2.4555 | |
53 | L | D | -1.6151 | |
54 | K | D | -2.0593 | |
55 | H | D | -1.8517 | |
56 | L | D | 0.0000 | |
57 | Q | D | -0.9491 | |
58 | C | D | 0.0000 | |
59 | L | D | 0.0000 | |
60 | E | D | -1.3725 | |
61 | E | D | -2.3010 | |
62 | E | D | 0.0000 | |
63 | L | D | 0.0000 | |
64 | K | D | -2.8098 | |
65 | P | D | -1.9510 | |
66 | L | D | 0.0000 | |
67 | E | D | -2.6626 | |
68 | E | D | -2.5938 | |
69 | V | D | 0.0000 | |
70 | L | D | 0.0000 | |
71 | N | D | -1.8135 | |
72 | L | D | -0.5323 | |
73 | A | D | -0.9451 | |
74 | Q | D | -1.3723 | |
75 | S | D | -1.8210 | |
76 | K | D | -2.3423 | |
77 | N | D | -2.0148 | |
78 | F | D | -0.7171 | |
79 | H | D | -1.8150 | |
80 | L | D | -1.7164 | |
81 | R | D | -3.0828 | |
82 | P | D | 0.0000 | |
83 | R | D | -3.5285 | |
84 | D | D | -3.3533 | |
85 | L | D | 0.0000 | |
86 | I | D | 0.0000 | |
87 | S | D | -1.2603 | |
88 | N | D | -1.0058 | |
89 | I | D | 0.0000 | |
90 | N | D | -0.0863 | |
91 | V | D | 1.3209 | |
92 | I | D | 0.2524 | |
93 | V | D | 0.0000 | |
94 | L | D | 0.2042 | |
95 | E | D | -1.1127 | |
96 | L | D | 0.0000 | |
97 | K | D | -1.6900 | |
98 | G | D | -1.5345 | |
99 | S | D | -1.6018 | |
100 | E | D | -2.1876 | |
101 | T | D | -1.0210 | |
102 | T | D | -0.5248 | |
103 | F | D | -0.0834 | |
104 | M | D | 0.7876 | |
105 | C | D | -0.7171 | |
106 | E | D | -1.5686 | |
107 | Y | D | -1.2759 | |
108 | A | D | -2.1830 | |
109 | D | D | -2.7990 | |
110 | E | D | -2.7958 | |
111 | T | D | -1.5113 | |
112 | A | D | 0.0000 | |
113 | T | D | -0.6068 | |
114 | I | D | 0.0000 | |
115 | V | D | -1.0659 | |
116 | E | D | -1.9255 | |
117 | F | D | 0.0000 | |
118 | L | D | 0.0000 | |
119 | N | D | -1.6606 | |
120 | R | D | -1.5143 | |
121 | W | D | 0.0000 | |
122 | I | D | -1.1517 | |
123 | T | D | -0.7559 | |
124 | F | D | 0.0000 | |
125 | A | D | 0.0000 | |
126 | Q | D | -1.1136 | |
127 | S | D | -0.7752 | |
128 | I | D | 0.0000 | |
129 | I | D | -0.7403 | |
130 | S | D | -0.3864 | |
131 | T | D | -0.1581 | |
132 | L | D | -0.2421 | |
133 | T | D | -0.2585 |