Project name: 81af4cba93192c

Status: done

Started: 2026-05-28 05:03:43
Chain sequence(s) A: MDPYKHRPSSAFNSPFWTTNSGAPVWNNNSSLTVGPRGQYLLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDISHLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFIRDGMKFPDMVHALKPNPKSHIQENWRILDFFSHHPESLHMFTFLFDDLGVPQDYRHMEGSGVNTYTLINKAGKAHYVKFHWKPTCGVKCLLEDEAIKVGGANHSHATQDLYDSIAAGNYPEWKLFIQTIDPDHEDKFDFDPLDVTKTWPEDILPLQPVGRLVLNKNIDNFFAENEQLAFCPAIVVPGIYYSDDKLLQTRIFSYSDTQRHRLGPNYLQLPANAPKCAHHNNHHEGFMNFMHRDEEINYFPSRYDPVRHAEMFPIPPAVCTGRREKCIIEKENNFKQPGERYRSWAADRQERFICRWVDALSDPRVTHEIRSIWISYWSQADKSVGQKLASLLNVRPSI
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
alphaCutter usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       PDB-Info: The input structure is globular. Max score is recommended for pH analysis.  (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:02)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:06:55)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/81af4cba93192c/tmp/folded.pdb                 (00:06:55)
[INFO]       Main:     Simulation completed successfully.                                          (00:09:48)
Show buried residues

Minimal score value
-4.2015
Maximal score value
2.069
Average score
-0.6232
Total score value
-306.6019

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
1 M A 0.2669
2 D A -1.0021
3 P A -1.1055
4 Y A -1.0761
5 K A -2.1702
6 H A -1.9305
7 R A -1.7393
8 P A -1.2552
9 S A -0.5915
10 S A -0.2792
11 A A 0.1620
12 F A 0.5690
13 N A -0.2294
14 S A 0.2047
15 P A 0.4400
16 F A 1.6530
17 W A 1.3584
18 T A 0.2785
19 T A -0.5596
20 N A -1.6973
21 S A -1.0827
22 G A -0.8277
23 A A -0.0972
24 P A 0.4091
25 V A 0.7884
26 W A 0.8150
27 N A -1.0302
28 N A -1.1461
29 N A -1.7723
30 S A -0.9169
31 S A 0.5151
32 L A 1.2035
33 T A 0.8117
34 V A 1.1372
35 G A -0.2059
36 P A -0.9418
37 R A -1.9204
38 G A -0.7150
39 Q A -0.2674
40 Y A 1.2461
41 L A 1.5781
42 L A 1.5057
43 E A -0.1777
44 D A 0.8528
45 Y A 1.2514
46 H A 0.3980
47 L A 1.1077
48 V A 1.3854
49 E A 0.2214
50 K A 0.0807
51 L A 0.7357
52 A A -0.6134
53 N A -1.8608
54 F A -0.7950
55 D A -2.7742
56 R A -3.6902
57 E A -3.5833
58 R A -3.3139
59 I A -1.5339
60 P A -0.6262
61 E A -1.0150
62 R A 0.0112
63 V A 1.3124
64 V A 0.4179
65 H A -0.2514
66 A A 0.0000
67 R A -1.1345
68 G A 0.0000
69 A A 0.0000
70 S A 0.0000
71 A A 0.0000
72 K A -1.3998
73 G A -0.9545
74 F A -0.5962
75 F A 0.0000
76 E A -1.1184
77 V A 0.0000
78 T A -1.3134
79 H A -1.9315
80 D A -2.6301
81 I A 0.0000
82 S A -1.8102
83 H A -1.8918
84 L A 0.0000
85 T A 0.0000
86 C A -0.9295
87 A A 0.0000
88 D A -1.3514
89 F A 0.0000
90 L A 0.0000
91 R A -1.6155
92 A A -1.5048
93 P A -1.5063
94 G A -1.2575
95 V A -0.9436
96 Q A -1.3792
97 T A 0.0000
98 P A -0.6217
99 V A 0.0000
100 I A 0.0000
101 V A 0.0000
102 R A 0.0000
103 F A 0.0000
104 S A 0.0000
105 T A 0.0000
106 V A 0.0000
107 I A 0.0000
108 H A -0.8670
109 E A -1.7573
110 R A -1.7502
111 G A -1.4035
112 S A -1.1017
113 P A -0.8112
114 E A 0.0000
115 T A 0.0000
116 L A 0.1691
117 R A -0.4113
118 D A 0.0000
119 P A 0.0000
120 R A 0.0000
121 G A 0.0000
122 F A 0.0000
123 A A 0.0000
124 V A 0.0000
125 K A 0.0000
126 F A 0.0000
127 Y A -1.0118
128 T A 0.0000
129 R A -2.8708
130 E A -2.6380
131 G A -1.6458
132 N A 0.0000
133 F A 0.0000
134 D A 0.0000
135 L A 0.0000
136 V A 0.2090
137 G A 0.0000
138 N A 0.0000
139 N A 0.0000
140 F A 0.0000
141 P A -0.0628
142 V A 0.0000
143 F A 0.1598
144 F A 0.0000
145 I A 0.0000
146 R A 0.0000
147 D A -0.0428
148 G A 0.0000
149 M A 0.4322
150 K A -0.6728
151 F A -0.3637
152 P A -1.1048
153 D A -2.1033
154 M A 0.0000
155 V A 0.0000
156 H A -1.8188
157 A A 0.0000
158 L A 0.0000
159 K A -1.0366
160 P A -0.7645
161 N A 0.0000
162 P A -1.3389
163 K A -1.8625
164 S A -0.9564
165 H A -0.8500
166 I A 0.7601
167 Q A -0.1594
168 E A -0.6936
169 N A -1.2158
170 W A -1.2944
171 R A -1.2309
172 I A 0.0000
173 L A 0.0000
174 D A -1.6589
175 F A -1.0316
176 F A 0.0000
177 S A 0.0000
178 H A -1.0925
179 H A 0.0000
180 P A -0.3472
181 E A -0.4182
182 S A 0.0000
183 L A 0.0000
184 H A 0.0000
185 M A 0.0000
186 F A 0.0000
187 T A 0.0000
188 F A 0.0000
189 L A 0.0000
190 F A 0.0000
191 D A 0.0000
192 D A -0.4860
193 L A -0.0546
194 G A 0.0000
195 V A 0.0000
196 P A 0.0000
197 Q A -0.7601
198 D A 0.0000
199 Y A 0.0000
200 R A -0.3577
201 H A -0.4898
202 M A 0.0000
203 E A -0.6566
204 G A 0.0000
205 S A 0.0000
206 G A 0.0000
207 V A 0.0000
208 N A 0.0000
209 T A 0.0000
210 Y A 0.0000
211 T A 0.0000
212 L A 0.0000
213 I A 0.0000
214 N A -1.2576
215 K A -1.7932
216 A A -1.1864
217 G A -0.6062
218 K A -1.3187
219 A A -0.7318
220 H A -0.6826
221 Y A -0.3624
222 V A 0.0000
223 K A 0.0000
224 F A 0.0000
225 H A -0.3659
226 W A 0.0000
227 K A -1.0763
228 P A 0.0000
229 T A -0.3640
230 C A 0.0860
231 G A -0.1188
232 V A 0.0527
233 K A -0.9231
234 C A -0.5730
235 L A 0.0000
236 L A -0.7030
237 E A -1.6797
238 D A -2.3753
239 E A -2.1476
240 A A -0.9949
241 I A -0.1416
242 K A -1.9602
243 V A -1.1130
244 G A -0.9164
245 G A -0.9257
246 A A -0.7521
247 N A -1.2835
248 H A -1.4864
249 S A -1.1547
250 H A -0.9802
251 A A 0.0000
252 T A -0.8928
253 Q A -1.6508
254 D A -1.3854
255 L A 0.0000
256 Y A -1.1783
257 D A -2.1259
258 S A 0.0000
259 I A 0.0000
260 A A -1.2352
261 A A -0.8804
262 G A -1.3057
263 N A -1.4103
264 Y A -0.5948
265 P A 0.0000
266 E A -0.6512
267 W A 0.0000
268 K A -1.2896
269 L A 0.0000
270 F A -0.2666
271 I A 0.0000
272 Q A 0.0000
273 T A -0.1395
274 I A 0.0000
275 D A -1.7587
276 P A -2.1097
277 D A -3.2570
278 H A -3.4267
279 E A -3.5875
280 D A -4.1083
281 K A -3.6951
282 F A -2.6162
283 D A -3.0695
284 F A 0.0000
285 D A -2.0089
286 P A 0.0000
287 L A -0.5128
288 D A 0.0000
289 V A 0.0000
290 T A 0.0000
291 K A 0.0000
292 T A -0.3137
293 W A 0.0000
294 P A -0.8363
295 E A -2.0217
296 D A -1.6912
297 I A 0.6124
298 L A -0.1597
299 P A -0.7889
300 L A -0.3626
301 Q A -0.3189
302 P A -0.7292
303 V A 0.0000
304 G A 0.0000
305 R A -1.1368
306 L A 0.0000
307 V A 0.0000
308 L A 0.0000
309 N A -1.6405
310 K A -2.3714
311 N A -1.9313
312 I A -1.2326
313 D A -2.1950
314 N A -1.0521
315 F A 0.9037
316 F A 0.6884
317 A A 0.1378
318 E A -0.2278
319 N A 0.0000
320 E A 0.0000
321 Q A 0.2995
322 L A 0.0000
323 A A 0.0000
324 F A 0.0000
325 C A 0.0000
326 P A 0.0000
327 A A 0.8667
328 I A 0.6593
329 V A 0.5310
330 V A 0.0000
331 P A 0.1601
332 G A 0.0000
333 I A 0.0000
334 Y A 0.8321
335 Y A 0.0747
336 S A 0.0000
337 D A -1.9445
338 D A 0.0000
339 K A -1.0384
340 L A 0.0000
341 L A 0.0000
342 Q A -0.7251
343 T A 0.3981
344 R A 0.3405
345 I A 1.0533
346 F A 1.6177
347 S A 0.4659
348 Y A 0.2087
349 S A -0.3900
350 D A -1.4727
351 T A -0.8841
352 Q A 0.0000
353 R A -2.2417
354 H A -1.9622
355 R A 0.0000
356 L A -0.2093
357 G A -0.1622
358 P A -0.5206
359 N A 0.0000
360 Y A 0.0000
361 L A 0.5946
362 Q A 0.5966
363 L A 0.2876
364 P A -0.3180
365 A A 0.0000
366 N A 0.0000
367 A A -0.3072
368 P A -1.3470
369 K A -2.3623
370 C A -1.8727
371 A A -1.4791
372 H A -1.9738
373 H A -2.0040
374 N A -1.9991
375 N A -2.3827
376 H A -2.4686
377 H A -2.9460
378 E A -1.8584
379 G A -0.2270
380 F A 1.9122
381 M A 1.7170
382 N A 0.2743
383 F A 0.7438
384 M A -0.1599
385 H A -1.4333
386 R A -2.9115
387 D A -3.5047
388 E A -4.2015
389 E A -3.1078
390 I A -1.7576
391 N A -2.0237
392 Y A 0.6001
393 F A 1.0471
394 P A 0.1841
395 S A -0.2449
396 R A -1.1644
397 Y A 0.1811
398 D A -0.6826
399 P A -0.5852
400 V A -0.8881
401 R A -2.2582
402 H A -2.0603
403 A A -1.3574
404 E A -1.5784
405 M A 0.6016
406 F A 0.8928
407 P A 0.6920
408 I A 1.9025
409 P A 0.8862
410 P A 0.6478
411 A A 1.2088
412 V A 2.0690
413 C A 1.4453
414 T A -0.0536
415 G A -1.7912
416 R A -3.4350
417 R A -3.5759
418 E A -2.9086
419 K A -2.0778
420 C A -0.0970
421 I A 0.6544
422 I A -0.4977
423 E A -1.9470
424 K A -2.6052
425 E A -1.6325
426 N A -1.8127
427 N A -1.0223
428 F A -1.3152
429 K A -2.6126
430 Q A -1.8234
431 P A 0.0000
432 G A 0.0000
433 E A -2.9399
434 R A -1.9434
435 Y A 0.0000
436 R A -2.2273
437 S A -1.4638
438 W A 0.0000
439 A A -1.1422
440 A A -1.7001
441 D A -2.7617
442 R A -2.0791
443 Q A -2.0959
444 E A -2.8043
445 R A -1.7437
446 F A 0.0000
447 I A 0.0000
448 C A -0.4484
449 R A 0.0000
450 W A 0.0000
451 V A -0.3032
452 D A -1.6980
453 A A 0.0000
454 L A 0.0000
455 S A -1.1293
456 D A -1.6261
457 P A -1.4556
458 R A -2.4497
459 V A 0.0000
460 T A -2.0027
461 H A -2.1399
462 E A -2.3861
463 I A 0.0000
464 R A -1.1907
465 S A -1.1249
466 I A -0.4198
467 W A 0.0000
468 I A 0.0000
469 S A -0.3965
470 Y A -0.3700
471 W A 0.0000
472 S A -1.6740
473 Q A -1.8832
474 A A 0.0000
475 D A -2.3226
476 K A -2.5803
477 S A -1.9087
478 V A 0.0000
479 G A 0.0000
480 Q A -2.1345
481 K A -1.5092
482 L A 0.0000
483 A A 0.0000
484 S A -0.6719
485 L A 0.9105
486 L A -0.3781
487 N A -1.2127
488 V A -1.4387
489 R A -2.0710
490 P A -0.9117
491 S A 0.2790
492 I A 1.6158
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is globular. Max score is recommended for pH analysis.

pH
Average A4D Score
Max A4D Score
4.0 -0.3551 5.7382 View CSV PDB
4.5 -0.4199 5.7382 View CSV PDB
5.0 -0.4938 5.7382 View CSV PDB
5.5 -0.5621 5.7382 View CSV PDB
6.0 -0.6136 5.7382 View CSV PDB
6.5 -0.6432 5.7382 View CSV PDB
7.0 -0.6551 5.7382 View CSV PDB
7.5 -0.6573 5.7382 View CSV PDB
8.0 -0.654 5.7382 View CSV PDB
8.5 -0.6441 5.7382 View CSV PDB
9.0 -0.6249 5.7382 View CSV PDB