Project name: MR_LBD_zebrafish [mutate: VT724A, CT725A, LS730A, VT735A, FN737A, CS794A, AS830A, VK836A, VT846A, YR852A, VT883A, WS904A, FH908A, AS916A, VT947A, KR969A, IE781A] [mutate: EI781A]

Status: done

Started: 2025-10-01 19:32:21
Chain sequence(s) A: TTSVLESIEPETVNAGYDNTQPDTTDHLLTSLNQLAGKQMIRVVKWAKVLPGFRSLPEEDQITLIQYSWMSLSSFSLSWRSYKHTNAQMLYFAPDLVFNEERMQQSSMYDLCKGMRQVSQEFTRLQLTREEYLAMKVLLLLSTVPKDGLKNQGAFEEMRTNYIKELRRSVGKATNNSGQTSQRFHQLTKLLDSTHDLVRSLLDFCFYTFRESQALKVEFPEMLTEIISDQIPKVESGQTHTLYFHRK
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage Yes
pH calculations No
alphaCutter usage No
Dynamic mode No
Automated mutations No
Mutated residues EI781A
Energy difference between WT (input) and mutated protein (by FoldX) 0.41833 kcal/mol
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:01)
[INFO]       FoldX:    Building mutant model                                                       (00:01:28)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:01:59)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:00)
Show buried residues

Minimal score value
-2.1893
Maximal score value
1.7418
Average score
-0.4033
Total score value
-99.6089

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
724 T A 0.0388
725 T A -0.0599
726 S A -0.0586
727 V A 0.8300
728 L A 0.0000
729 E A -1.0068
730 S A -0.3384
731 I A 0.1334
732 E A -0.4883
733 P A -0.4796
734 E A -1.8345
735 T A -0.3200
736 V A -0.0171
737 N A -1.2335
738 A A 0.0000
739 G A -0.4663
740 Y A 0.0000
741 D A -0.9808
742 N A -1.4215
743 T A -0.4852
744 Q A -1.1214
745 P A -0.5120
746 D A -0.4210
747 T A -0.0931
748 T A -0.1559
749 D A -0.7835
750 H A -0.3269
751 L A 0.0000
752 L A 0.0000
753 T A -0.1923
754 S A 0.0000
755 L A 0.0000
756 N A -0.2376
757 Q A -0.5492
758 L A 0.0000
759 A A -0.0053
760 G A 0.0000
761 K A -0.4810
762 Q A -0.2258
763 M A 0.0000
764 I A 1.7418
765 R A -0.5502
766 V A 0.0000
767 V A 0.2753
768 K A -1.5969
769 W A 0.0000
770 A A 0.0000
771 K A -0.5844
772 V A 0.4242
773 L A 0.0000
774 P A -0.1760
775 G A -0.3353
776 F A 0.0000
777 R A -1.8820
778 S A -0.5414
779 L A 0.0000
780 P A 0.2694
781 I A 1.3620 mutated: EI781A
782 E A -1.3298
783 D A 0.0000
784 Q A 0.0000
785 I A 1.1028
786 T A 0.2196
787 L A 0.0000
788 I A 0.0000
789 Q A -0.1476
790 Y A 0.0000
791 S A 0.0000
792 W A 0.0000
793 M A 0.1145
794 S A 0.0000
795 L A 0.0000
796 S A -0.0394
797 S A 0.0000
798 F A 0.0000
799 S A 0.0000
800 L A 0.0000
801 S A 0.0000
802 W A 0.0806
803 R A -0.2183
804 S A 0.0000
805 Y A -0.2760
806 K A -1.8462
807 H A -1.2982
808 T A -0.4112
809 N A -1.2520
810 A A 0.0000
811 Q A -1.1280
812 M A 0.1827
813 L A 0.0000
814 Y A 0.2388
815 F A 0.2162
816 A A 0.0000
817 P A -0.2812
818 D A -0.4467
819 L A 0.0000
820 V A 0.3640
821 F A 0.0000
822 N A -0.5793
823 E A -1.1055
824 E A -1.9814
825 R A -0.6277
826 M A 0.0000
827 Q A -1.3640
828 Q A -1.1638
829 S A 0.0000
830 S A -0.2129
831 M A 0.0000
832 Y A -0.0389
833 D A -1.7088
834 L A -0.1594
835 C A 0.0000
836 K A -1.3706
837 G A -0.3287
838 M A 0.0000
839 R A -0.4298
840 Q A -1.2549
841 V A 0.0000
842 S A 0.0000
843 Q A -0.7428
844 E A -0.6018
845 F A 0.0000
846 T A -0.3189
847 R A -1.7003
848 L A 0.0000
849 Q A -1.1983
850 L A 0.0000
851 T A -0.3440
852 R A -1.9074
853 E A -0.9692
854 E A 0.0000
855 Y A 0.0000
856 L A 0.0000
857 A A 0.0000
858 M A 0.0000
859 K A 0.0000
860 V A 0.0000
861 L A 0.0000
862 L A 0.0000
863 L A 0.0000
864 L A 0.0000
865 S A 0.0000
866 T A -0.0089
867 V A 0.0000
868 P A -0.3525
869 K A -2.0313
870 D A -2.1206
871 G A -0.4538
872 L A 0.0000
873 K A -1.8075
874 N A -0.9758
875 Q A -0.5901
876 G A -0.5349
877 A A -0.0718
878 F A 0.0000
879 E A -1.7599
880 E A -2.0779
881 M A 0.0000
882 R A -0.2042
883 T A -0.1459
884 N A -0.5737
885 Y A 0.0000
886 I A 0.0829
887 K A -1.6307
888 E A 0.0000
889 L A 0.0000
890 R A -1.5310
891 R A -2.0916
892 S A 0.0000
893 V A 0.0000
894 G A -0.8103
895 K A -1.7477
896 A A -0.2698
897 T A -0.2299
898 N A -1.5009
899 N A -1.5378
900 S A -0.5265
901 G A -0.6269
902 Q A -0.7622
903 T A -0.1764
904 S A -0.3241
905 Q A -1.2585
906 R A -0.4768
907 F A 0.0000
908 H A -0.5862
909 Q A -0.4484
910 L A 0.0000
911 T A 0.0000
912 K A -1.5478
913 L A 0.0000
914 L A 0.0000
915 D A 0.0000
916 S A -0.1486
917 T A 0.0000
918 H A 0.0000
919 D A -0.6793
920 L A 0.0522
921 V A 0.0000
922 R A -1.4978
923 S A -0.5375
924 L A 0.0000
925 L A -0.1630
926 D A -1.7223
927 F A 0.0312
928 C A 0.0000
929 F A 0.0000
930 Y A 0.8415
931 T A 0.0000
932 F A 0.0236
933 R A -1.9608
934 E A -1.3484
935 S A -0.4065
936 Q A -1.1973
937 A A -0.0859
938 L A 0.1032
939 K A -1.6313
940 V A 0.0000
941 E A -1.7738
942 F A -0.0739
943 P A -0.3130
944 E A -1.7894
945 M A -0.1063
946 L A 0.0000
947 T A -0.5401
948 E A -1.8237
949 I A 0.0000
950 I A 0.0000
951 S A -0.3118
952 D A -0.5868
953 Q A 0.0000
954 I A 0.1836
955 P A -0.2868
956 K A -0.4904
957 V A 0.0594
958 E A -1.7702
959 S A -0.5647
960 G A -0.3276
961 Q A -1.0768
962 T A -0.3312
963 H A -0.7064
964 T A -0.0892
965 L A 0.3208
966 Y A 0.3997
967 F A 0.3002
968 H A -0.5029
969 R A -2.1893
970 K A -2.0313
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