| Chain sequence(s) |
A: MKYFSRMTKETSNPEKNNIVLMGRKTWDSIPAKFRPLPNRVNVVLSSQAKSDSNKFTGSIACDTFDSAIQEALQREGKVETVWVIGGYSIYKAALESEYIHRLYITRVLREYDCDTFFPEFDHHKFKKLVDPSVPSELQEEDGVQYR
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimization (00:00:01)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:04:29)
[INFO] Main: Simulation completed successfully. (00:04:30)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 1 | M | A | 0.4071 | |
| 2 | K | A | -1.0679 | |
| 3 | Y | A | -0.1184 | |
| 4 | F | A | 0.2946 | |
| 5 | S | A | -0.8746 | |
| 6 | R | A | -1.4262 | |
| 7 | M | A | -0.8164 | |
| 8 | T | A | 0.0000 | |
| 9 | K | A | -2.0448 | |
| 10 | E | A | -2.8043 | |
| 11 | T | A | -2.0200 | |
| 12 | S | A | -1.3159 | |
| 13 | N | A | -1.8757 | |
| 14 | P | A | -2.0824 | |
| 15 | E | A | -2.8607 | |
| 16 | K | A | -3.1060 | |
| 17 | N | A | -2.4562 | |
| 18 | N | A | 0.0000 | |
| 19 | I | A | 0.0000 | |
| 20 | V | A | 0.0000 | |
| 21 | L | A | 0.0000 | |
| 22 | M | A | 0.0000 | |
| 23 | G | A | 0.0000 | |
| 24 | R | A | -1.8518 | |
| 25 | K | A | -2.2252 | |
| 26 | T | A | -1.2106 | |
| 27 | W | A | 0.0000 | |
| 28 | D | A | -1.8699 | |
| 29 | S | A | -1.1001 | |
| 30 | I | A | -0.3325 | |
| 31 | P | A | -0.2755 | |
| 32 | A | A | -0.4865 | |
| 33 | K | A | -0.9005 | |
| 34 | F | A | 0.8611 | |
| 35 | R | A | -0.3156 | |
| 36 | P | A | -0.3928 | |
| 37 | L | A | 0.0000 | |
| 38 | P | A | -0.7067 | |
| 39 | N | A | -1.8342 | |
| 40 | R | A | 0.0000 | |
| 41 | V | A | -0.0052 | |
| 42 | N | A | 0.0000 | |
| 43 | V | A | 0.0000 | |
| 44 | V | A | 0.0000 | |
| 45 | L | A | 0.0000 | |
| 46 | S | A | 0.0000 | |
| 47 | S | A | -1.4429 | |
| 48 | Q | A | -2.2102 | |
| 49 | A | A | 0.0000 | |
| 50 | K | A | -2.6233 | |
| 51 | S | A | -2.0361 | |
| 52 | D | A | -2.2764 | |
| 53 | S | A | -2.2239 | |
| 54 | N | A | -2.5563 | |
| 55 | K | A | -2.6322 | |
| 56 | F | A | 0.0000 | |
| 57 | T | A | -1.2611 | |
| 58 | G | A | -0.8747 | |
| 59 | S | A | -0.4306 | |
| 60 | I | A | 0.3117 | |
| 61 | A | A | -1.0425 | |
| 62 | C | A | 0.0000 | |
| 63 | D | A | -1.5881 | |
| 64 | T | A | -1.0100 | |
| 65 | F | A | -1.0152 | |
| 66 | D | A | -2.1317 | |
| 67 | S | A | -1.3765 | |
| 68 | A | A | 0.0000 | |
| 69 | I | A | 0.0000 | |
| 70 | Q | A | -1.8769 | |
| 71 | E | A | -1.4196 | |
| 72 | A | A | 0.0000 | |
| 73 | L | A | -1.1797 | |
| 74 | Q | A | -2.2222 | |
| 75 | R | A | -2.6828 | |
| 76 | E | A | -3.1430 | |
| 77 | G | A | -2.7731 | |
| 78 | K | A | -3.5289 | |
| 79 | V | A | -2.2351 | |
| 80 | E | A | -2.1017 | |
| 81 | T | A | -0.5337 | |
| 82 | V | A | 0.8375 | |
| 83 | W | A | 0.4711 | |
| 84 | V | A | 0.8422 | |
| 85 | I | A | 0.6723 | |
| 86 | G | A | 0.0000 | |
| 87 | G | A | 0.0315 | |
| 88 | Y | A | 0.6583 | |
| 89 | S | A | -0.0590 | |
| 90 | I | A | 0.0000 | |
| 91 | Y | A | -0.0065 | |
| 92 | K | A | -1.0419 | |
| 93 | A | A | -1.0548 | |
| 94 | A | A | 0.0000 | |
| 95 | L | A | -1.3366 | |
| 96 | E | A | -1.9755 | |
| 97 | S | A | -1.5687 | |
| 98 | E | A | -1.6342 | |
| 99 | Y | A | -0.0609 | |
| 100 | I | A | -0.4211 | |
| 101 | H | A | -1.2102 | |
| 102 | R | A | -1.3386 | |
| 103 | L | A | 0.1093 | |
| 104 | Y | A | 1.0973 | |
| 105 | I | A | 1.4195 | |
| 106 | T | A | 0.0242 | |
| 107 | R | A | -1.5290 | |
| 108 | V | A | -0.8816 | |
| 109 | L | A | -1.0247 | |
| 110 | R | A | -1.5258 | |
| 111 | E | A | -1.8409 | |
| 112 | Y | A | -0.6278 | |
| 113 | D | A | -1.6022 | |
| 114 | C | A | -0.4854 | |
| 115 | D | A | -1.2931 | |
| 116 | T | A | 0.2759 | |
| 117 | F | A | 1.9216 | |
| 118 | F | A | 1.4583 | |
| 119 | P | A | 0.0000 | |
| 120 | E | A | -1.5473 | |
| 121 | F | A | -1.7832 | |
| 122 | D | A | -2.3301 | |
| 123 | H | A | -2.9109 | |
| 124 | H | A | -2.8575 | |
| 125 | K | A | -2.8024 | |
| 126 | F | A | -2.3909 | |
| 127 | K | A | -2.5928 | |
| 128 | K | A | -1.7697 | |
| 129 | L | A | 0.7046 | |
| 130 | V | A | 1.6710 | |
| 131 | D | A | 0.7156 | |
| 132 | P | A | 0.2553 | |
| 133 | S | A | 0.1009 | |
| 134 | V | A | 0.2532 | |
| 135 | P | A | -0.6756 | |
| 136 | S | A | -1.0568 | |
| 137 | E | A | -2.1699 | |
| 138 | L | A | -1.5480 | |
| 139 | Q | A | -2.2314 | |
| 140 | E | A | -3.5601 | |
| 141 | E | A | -3.7201 | |
| 142 | D | A | -3.2399 | |
| 143 | G | A | -2.2992 | |
| 144 | V | A | -1.8126 | |
| 145 | Q | A | -2.2587 | |
| 146 | Y | A | -2.1166 | |
| 147 | R | A | -2.4414 |