Project name: 87c0df21dd4ca43

Chain sequence(s)	A: LRAKIKVRLRGFLQHIIGAL
Selected Chain(s)	A
Distance of aggregation	10 Å
FoldX usage	Yes
pH calculations	Yes
alphaCutter usage	No
Dynamic mode	No
Automated mutations	No

Simulation log

[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[WARNING]    PDB-Info: The input structure is likely a peptide. Results may be inaccurate.         (00:00:02)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:02)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:00:44)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/87c0df21dd4ca43/tmp/folded.pdb                (00:00:44)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:21)

• Minimal score value: -2.1035
• Maximal score value: 1.9287
• Average score: -0.4782
• Total score value: -9.5637

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index	residue name	chain	Aggrescan4D score	mutation
1	L	A	0.2685
2	R	A	-1.5742
3	A	A	-1.4983
4	K	A	-2.1035
5	I	A	-1.5662
6	K	A	-2.0718
7	V	A	-0.9054
8	R	A	-1.7717
9	L	A	-1.1798
10	R	A	-1.9691
11	G	A	-1.2441
12	F	A	0.0185
13	L	A	0.1913
14	Q	A	-0.6317
15	H	A	-0.3394
16	I	A	1.3061
17	I	A	1.9172
18	G	A	0.6498
19	A	A	1.0114
20	L	A	1.9287

Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is likely a peptide. Results may be inaccurate. The input structure is partially or entirely disordered. Average score is recommended for pH analysis.

pH	Average A4D Score	Max A4D Score
4.0	-1.7608	3.0917
4.5	-1.743	3.1016
5.0	-1.6963	3.1283
5.5	-1.5976	3.1849
6.0	-1.4407	3.2665
6.5	-1.2486	3.3412
7.0	-1.0502	3.3854
7.5	-0.8562	3.4041
8.0	-0.6661	3.4107
8.5	-0.4795	3.4129
9.0	-0.2996	3.4136