| Chain sequence(s) |
A: EVQLVESGGGLVQAGGSLRLSCAASGRAFSFNNMAWFRQAPGKERDIVVAVSWTGDTTYYADAVKGRFAISRDDVKNMVYLQMNSLKPEDTAVYYCATQSAGGRSKYLAVREKYDYWGQGTQVTVSSGGGGSGGGGSGGGGSGGGGSQVQLVQSGGGSVQTGGSLRLSCAASGRTFSDYAMGWFRQAPGKEREFVAAINWSGSSTGSADSVKGRFTISRDNVKNTVYLQMNTLKPEDTAIYYCAATKGSNWYVKRETYDYWGQGTQVTVSSAAA
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimization (00:00:01)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:05:06)
[INFO] Main: Simulation completed successfully. (00:05:08)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 1 | E | A | -2.6870 | |
| 2 | V | A | 0.0000 | |
| 3 | Q | A | -1.6682 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 1.2641 | |
| 6 | E | A | 0.3621 | |
| 7 | S | A | -0.4788 | |
| 8 | G | A | -1.0749 | |
| 9 | G | A | -0.7175 | |
| 10 | G | A | 0.0851 | |
| 11 | L | A | 1.0743 | |
| 12 | V | A | 0.0000 | |
| 13 | Q | A | -1.5034 | |
| 14 | A | A | -1.6326 | |
| 15 | G | A | -1.3797 | |
| 16 | G | A | -0.9515 | |
| 17 | S | A | -1.2402 | |
| 18 | L | A | -1.0239 | |
| 19 | R | A | -2.0833 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.3926 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.0792 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -1.6655 | |
| 26 | G | A | -2.3615 | |
| 27 | R | A | -2.4825 | |
| 28 | A | A | -0.6314 | |
| 29 | F | A | 0.0000 | |
| 30 | S | A | 0.6219 | |
| 31 | F | A | 1.6975 | |
| 32 | N | A | 0.0000 | |
| 33 | N | A | 0.0000 | |
| 34 | M | A | 0.0000 | |
| 35 | A | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | F | A | 0.0000 | |
| 38 | R | A | -1.1591 | |
| 39 | Q | A | 0.0000 | |
| 40 | A | A | -1.6512 | |
| 41 | P | A | -1.0493 | |
| 42 | G | A | -1.9923 | |
| 43 | K | A | -2.8457 | |
| 44 | E | A | -3.2582 | |
| 45 | R | A | 0.0000 | |
| 46 | D | A | -1.8818 | |
| 47 | I | A | 0.0000 | |
| 48 | V | A | 0.0000 | |
| 49 | V | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | V | A | 0.0000 | |
| 52 | S | A | 0.0000 | |
| 53 | W | A | 0.4617 | |
| 54 | T | A | -0.2441 | |
| 55 | G | A | -1.1890 | |
| 56 | D | A | -1.8618 | |
| 57 | T | A | -1.0232 | |
| 58 | T | A | -0.1796 | |
| 59 | Y | A | 0.0600 | |
| 60 | Y | A | -0.5135 | |
| 61 | A | A | -1.2096 | |
| 62 | D | A | -2.3013 | |
| 63 | A | A | -1.5395 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.4609 | |
| 66 | G | A | -1.7252 | |
| 67 | R | A | -1.5259 | |
| 68 | F | A | 0.0000 | |
| 69 | A | A | -0.7383 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.4961 | |
| 72 | R | A | -0.7331 | |
| 73 | D | A | -1.0040 | |
| 74 | D | A | -0.7476 | |
| 75 | V | A | 0.2328 | |
| 76 | K | A | -1.4807 | |
| 77 | N | A | -1.4423 | |
| 78 | M | A | -0.6036 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | -0.5379 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.2336 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.4367 | |
| 85 | S | A | -1.1535 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.1149 | |
| 88 | P | A | -1.8290 | |
| 89 | E | A | -2.1958 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.9164 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | 0.0000 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | 0.0000 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | T | A | 0.0000 | |
| 99 | Q | A | 0.0000 | |
| 100 | S | A | -0.7438 | |
| 101 | A | A | -0.2568 | |
| 102 | G | A | -0.4553 | |
| 103 | G | A | -1.1202 | |
| 104 | R | A | -2.4820 | |
| 105 | S | A | -1.8044 | |
| 106 | K | A | -2.0306 | |
| 107 | Y | A | -1.2812 | |
| 108 | L | A | 0.0000 | |
| 109 | A | A | -0.4287 | |
| 110 | V | A | -0.9217 | |
| 111 | R | A | -2.0397 | |
| 112 | E | A | -2.7625 | |
| 113 | K | A | -2.4939 | |
| 114 | Y | A | 0.0000 | |
| 115 | D | A | -2.3494 | |
| 116 | Y | A | -1.1473 | |
| 117 | W | A | -0.4806 | |
| 118 | G | A | 0.0000 | |
| 119 | Q | A | -0.2806 | |
| 120 | G | A | 0.0000 | |
| 121 | T | A | -0.5787 | |
| 122 | Q | A | -0.8704 | |
| 123 | V | A | 0.0000 | |
| 124 | T | A | -0.3265 | |
| 125 | V | A | 0.0000 | |
| 126 | S | A | -0.9967 | |
| 127 | S | A | -1.2572 | |
| 128 | G | A | -1.6114 | |
| 129 | G | A | -1.3363 | |
| 130 | G | A | -1.2131 | |
| 131 | G | A | -1.1994 | |
| 132 | S | A | -1.0485 | |
| 133 | G | A | -1.1481 | |
| 134 | G | A | -1.1498 | |
| 135 | G | A | -1.1023 | |
| 136 | G | A | -1.1161 | |
| 137 | S | A | -0.8684 | |
| 138 | G | A | -1.0557 | |
| 139 | G | A | -1.1501 | |
| 140 | G | A | -1.1344 | |
| 141 | G | A | -1.1595 | |
| 142 | S | A | -1.0265 | |
| 143 | G | A | -1.1987 | |
| 144 | G | A | -1.2003 | |
| 145 | G | A | -1.3408 | |
| 146 | G | A | -1.5528 | |
| 147 | S | A | -1.8112 | |
| 148 | Q | A | -2.1086 | |
| 149 | V | A | -1.7942 | |
| 150 | Q | A | -1.4130 | |
| 151 | L | A | 0.0000 | |
| 152 | V | A | 0.9284 | |
| 153 | Q | A | 0.2446 | |
| 154 | S | A | -0.4903 | |
| 155 | G | A | -0.9882 | |
| 156 | G | A | -0.9389 | |
| 157 | G | A | -0.7068 | |
| 158 | S | A | -0.6132 | |
| 159 | V | A | -0.8349 | |
| 160 | Q | A | -1.5830 | |
| 161 | T | A | -1.4897 | |
| 162 | G | A | -1.1911 | |
| 163 | G | A | -0.9700 | |
| 164 | S | A | -1.0940 | |
| 165 | L | A | -0.9767 | |
| 166 | R | A | -1.8471 | |
| 167 | L | A | 0.0000 | |
| 168 | S | A | -0.3943 | |
| 169 | C | A | 0.0000 | |
| 170 | A | A | -0.3131 | |
| 171 | A | A | -0.8141 | |
| 172 | S | A | -1.3249 | |
| 173 | G | A | -1.8214 | |
| 174 | R | A | -2.2269 | |
| 175 | T | A | -1.2051 | |
| 176 | F | A | 0.0000 | |
| 177 | S | A | -0.8671 | |
| 178 | D | A | -1.7032 | |
| 179 | Y | A | 0.0000 | |
| 180 | A | A | 0.0000 | |
| 181 | M | A | 0.0000 | |
| 182 | G | A | 0.0000 | |
| 183 | W | A | 0.0000 | |
| 184 | F | A | 0.0000 | |
| 185 | R | A | 0.0000 | |
| 186 | Q | A | 0.0000 | |
| 187 | A | A | -1.5478 | |
| 188 | P | A | -0.9944 | |
| 189 | G | A | -1.6063 | |
| 190 | K | A | -2.8031 | |
| 191 | E | A | -3.2306 | |
| 192 | R | A | 0.0000 | |
| 193 | E | A | -1.8340 | |
| 194 | F | A | -0.5144 | |
| 195 | V | A | 0.0000 | |
| 196 | A | A | 0.0000 | |
| 197 | A | A | 0.0000 | |
| 198 | I | A | 0.0000 | |
| 199 | N | A | -0.5287 | |
| 200 | W | A | -0.4787 | |
| 201 | S | A | -0.4817 | |
| 202 | G | A | -0.4587 | |
| 203 | S | A | -0.3409 | |
| 204 | S | A | -0.4447 | |
| 205 | T | A | -0.3459 | |
| 206 | G | A | -0.1960 | |
| 207 | S | A | -0.8896 | |
| 208 | A | A | -1.3205 | |
| 209 | D | A | -2.5917 | |
| 210 | S | A | -1.8346 | |
| 211 | V | A | 0.0000 | |
| 212 | K | A | -2.7582 | |
| 213 | G | A | -1.8141 | |
| 214 | R | A | -1.5991 | |
| 215 | F | A | 0.0000 | |
| 216 | T | A | -0.9234 | |
| 217 | I | A | 0.0000 | |
| 218 | S | A | -0.4713 | |
| 219 | R | A | -0.6847 | |
| 220 | D | A | -0.9362 | |
| 221 | N | A | -0.8165 | |
| 222 | V | A | 0.3260 | |
| 223 | K | A | -1.4877 | |
| 224 | N | A | -1.4444 | |
| 225 | T | A | 0.0000 | |
| 226 | V | A | 0.0000 | |
| 227 | Y | A | -0.5240 | |
| 228 | L | A | 0.0000 | |
| 229 | Q | A | -1.2374 | |
| 230 | M | A | 0.0000 | |
| 231 | N | A | -1.2653 | |
| 232 | T | A | -0.9839 | |
| 233 | L | A | 0.0000 | |
| 234 | K | A | -1.8192 | |
| 235 | P | A | -1.6989 | |
| 236 | E | A | -2.1742 | |
| 237 | D | A | 0.0000 | |
| 238 | T | A | -0.9942 | |
| 239 | A | A | 0.0000 | |
| 240 | I | A | 0.0000 | |
| 241 | Y | A | 0.0000 | |
| 242 | Y | A | 0.0000 | |
| 243 | C | A | 0.0000 | |
| 244 | A | A | 0.0000 | |
| 245 | A | A | 0.0000 | |
| 246 | T | A | 0.0000 | |
| 247 | K | A | -2.4465 | |
| 248 | G | A | -1.5689 | |
| 249 | S | A | -1.2616 | |
| 250 | N | A | -1.4814 | |
| 251 | W | A | -0.2994 | |
| 252 | Y | A | 0.1522 | |
| 253 | V | A | 0.5177 | |
| 254 | K | A | -1.7285 | |
| 255 | R | A | -2.3100 | |
| 256 | E | A | -2.7591 | |
| 257 | T | A | -1.8289 | |
| 258 | Y | A | 0.0000 | |
| 259 | D | A | -2.3877 | |
| 260 | Y | A | -1.1817 | |
| 261 | W | A | -0.5601 | |
| 262 | G | A | 0.0000 | |
| 263 | Q | A | -0.4667 | |
| 264 | G | A | 0.0000 | |
| 265 | T | A | -0.5389 | |
| 266 | Q | A | -0.9048 | |
| 267 | V | A | 0.0000 | |
| 268 | T | A | -0.8969 | |
| 269 | V | A | 0.0000 | |
| 270 | S | A | -1.1172 | |
| 271 | S | A | -0.7868 | |
| 272 | A | A | -0.4483 | |
| 273 | A | A | -0.1266 | |
| 274 | A | A | 0.0706 |