| Chain sequence(s) |
A: PIQSIKARQIYDSRGNPTVEVDLVTENGLFRAAVPSGASTGVHEALELRDNDKSKYHGKSVFKAVDNINNIIVPELLKSGLEVTQQTDIDNLLLKIDGTPNKAKLGANAILGVSLAVCKAGAAKKGIPLYKYIAELAGNSNIVLPVPAFNVINGGSHAGNKLAMQEFMILPLGAANFTEAMKMGSEVYHYLKAGIKKKFGLDATAVGDEGGFAPNILENKEALNLIIDAIKTAGYEGKIKIGMDVAASEFHKNGKYDLDFKNEKSDPATYLEPDALKNLYLEWVKGLPHRF
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:02)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:02)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:02)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:02)
[INFO] FoldX: Starting FoldX energy minimization (00:00:02)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:07:55)
[INFO] Main: Simulation completed successfully. (00:07:57)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 2 | P | A | -1.4588 | |
| 3 | I | A | 0.0000 | |
| 4 | Q | A | -1.6053 | |
| 5 | S | A | -0.8578 | |
| 6 | I | A | 0.0000 | |
| 7 | K | A | -1.9428 | |
| 8 | A | A | 0.0000 | |
| 9 | R | A | -2.1123 | |
| 10 | Q | A | -0.5784 | |
| 11 | I | A | 0.5063 | |
| 12 | Y | A | 1.0232 | |
| 13 | D | A | -0.1012 | |
| 14 | S | A | -1.1457 | |
| 15 | R | A | -1.5516 | |
| 16 | G | A | -0.4986 | |
| 17 | N | A | -0.4153 | |
| 18 | P | A | 0.0000 | |
| 19 | T | A | 0.0000 | |
| 20 | V | A | 0.0000 | |
| 21 | E | A | -1.1657 | |
| 22 | V | A | 0.0000 | |
| 23 | D | A | -1.1313 | |
| 24 | L | A | 0.0000 | |
| 25 | V | A | -0.7440 | |
| 26 | T | A | 0.0000 | |
| 27 | E | A | -2.7657 | |
| 28 | N | A | -2.3217 | |
| 29 | G | A | -1.0336 | |
| 30 | L | A | -0.0611 | |
| 31 | F | A | -0.3848 | |
| 32 | R | A | -1.6129 | |
| 33 | A | A | 0.0000 | |
| 34 | A | A | -0.4581 | |
| 35 | V | A | 0.0000 | |
| 36 | P | A | -0.3069 | |
| 37 | S | A | -0.7468 | |
| 38 | G | A | -0.7760 | |
| 39 | A | A | -0.7397 | |
| 40 | S | A | -0.2851 | |
| 41 | T | A | -0.5087 | |
| 42 | G | A | -0.6738 | |
| 43 | V | A | 0.5555 | |
| 44 | H | A | -1.1846 | |
| 45 | E | A | -2.1008 | |
| 46 | A | A | -1.2729 | |
| 47 | L | A | -0.8902 | |
| 48 | E | A | -1.1451 | |
| 49 | L | A | -0.9296 | |
| 50 | R | A | -1.3374 | |
| 51 | D | A | -2.2366 | |
| 52 | N | A | -3.2961 | |
| 53 | D | A | -3.5919 | |
| 54 | K | A | -3.6517 | |
| 55 | S | A | -2.5068 | |
| 56 | K | A | -3.0862 | |
| 57 | Y | A | -1.9014 | |
| 58 | H | A | -2.7500 | |
| 59 | G | A | 0.0000 | |
| 60 | K | A | -2.1074 | |
| 61 | S | A | 0.0000 | |
| 62 | V | A | 0.0000 | |
| 63 | F | A | -0.1798 | |
| 64 | K | A | -1.4394 | |
| 65 | A | A | 0.0000 | |
| 66 | V | A | 0.0000 | |
| 67 | D | A | -1.9248 | |
| 68 | N | A | 0.0000 | |
| 69 | I | A | 0.0000 | |
| 70 | N | A | -1.9119 | |
| 71 | N | A | -1.8738 | |
| 72 | I | A | -0.5422 | |
| 73 | I | A | 0.0000 | |
| 74 | V | A | 0.0000 | |
| 75 | P | A | -1.2681 | |
| 76 | E | A | -1.8687 | |
| 77 | L | A | 0.0000 | |
| 78 | L | A | -1.3264 | |
| 79 | K | A | -2.2949 | |
| 80 | S | A | -1.4524 | |
| 81 | G | A | -1.4509 | |
| 82 | L | A | -1.5567 | |
| 83 | E | A | -2.5746 | |
| 84 | V | A | 0.0000 | |
| 85 | T | A | -1.7667 | |
| 86 | Q | A | -1.8821 | |
| 87 | Q | A | 0.0000 | |
| 88 | T | A | -1.5196 | |
| 89 | D | A | -2.7099 | |
| 90 | I | A | 0.0000 | |
| 91 | D | A | -1.4005 | |
| 92 | N | A | -2.0601 | |
| 93 | L | A | -1.4423 | |
| 94 | L | A | 0.0000 | |
| 95 | L | A | -0.8699 | |
| 96 | K | A | -1.7042 | |
| 97 | I | A | -0.9169 | |
| 98 | D | A | 0.0000 | |
| 99 | G | A | -1.3037 | |
| 100 | T | A | -1.1773 | |
| 101 | P | A | -0.9770 | |
| 102 | N | A | -1.6109 | |
| 103 | K | A | -1.5163 | |
| 104 | A | A | -1.2638 | |
| 105 | K | A | -1.8742 | |
| 106 | L | A | 0.0000 | |
| 107 | G | A | 0.0000 | |
| 108 | A | A | -0.5284 | |
| 109 | N | A | 0.0000 | |
| 110 | A | A | 0.0000 | |
| 111 | I | A | 0.0000 | |
| 112 | L | A | 0.5728 | |
| 113 | G | A | 0.0000 | |
| 114 | V | A | 0.0000 | |
| 115 | S | A | 0.2959 | |
| 116 | L | A | 0.2742 | |
| 117 | A | A | 0.0000 | |
| 118 | V | A | 0.0000 | |
| 119 | C | A | 0.2278 | |
| 120 | K | A | -0.4113 | |
| 121 | A | A | 0.0000 | |
| 122 | G | A | 0.0000 | |
| 123 | A | A | 0.0000 | |
| 124 | A | A | -1.5325 | |
| 125 | K | A | -2.9916 | |
| 126 | K | A | -2.1779 | |
| 127 | G | A | -1.5230 | |
| 128 | I | A | -0.5054 | |
| 129 | P | A | 0.1738 | |
| 130 | L | A | 0.6334 | |
| 131 | Y | A | 1.3173 | |
| 132 | K | A | -0.3542 | |
| 133 | Y | A | 0.0000 | |
| 134 | I | A | 0.9514 | |
| 135 | A | A | 0.0000 | |
| 136 | E | A | -1.5129 | |
| 137 | L | A | 0.0086 | |
| 138 | A | A | -0.4828 | |
| 139 | G | A | -1.3956 | |
| 140 | N | A | -1.6141 | |
| 141 | S | A | -1.4191 | |
| 142 | N | A | -0.5573 | |
| 143 | I | A | 1.7333 | |
| 144 | V | A | 2.8058 | |
| 145 | L | A | 2.6405 | |
| 146 | P | A | 1.6364 | |
| 147 | V | A | 1.7371 | |
| 148 | P | A | 1.0610 | |
| 149 | A | A | 0.5517 | |
| 150 | F | A | 0.3263 | |
| 151 | N | A | -0.5365 | |
| 152 | V | A | 0.0000 | |
| 153 | I | A | 0.0000 | |
| 154 | N | A | -1.0140 | |
| 155 | G | A | 0.0000 | |
| 156 | G | A | 0.0000 | |
| 157 | S | A | -1.3456 | |
| 158 | H | A | -1.5819 | |
| 159 | A | A | -1.2911 | |
| 160 | G | A | -1.3401 | |
| 161 | N | A | 0.0000 | |
| 162 | K | A | -1.1253 | |
| 163 | L | A | 0.0000 | |
| 164 | A | A | 0.0000 | |
| 165 | M | A | 0.0000 | |
| 166 | Q | A | -1.0629 | |
| 167 | E | A | -0.8114 | |
| 168 | F | A | 0.0000 | |
| 169 | M | A | 0.2119 | |
| 170 | I | A | 0.0000 | |
| 171 | L | A | 0.4943 | |
| 172 | P | A | 0.0000 | |
| 173 | L | A | 0.2962 | |
| 174 | G | A | -0.7086 | |
| 175 | A | A | -0.4204 | |
| 176 | A | A | -0.6343 | |
| 177 | N | A | -0.8459 | |
| 178 | F | A | 0.2727 | |
| 179 | T | A | -0.6504 | |
| 180 | E | A | -1.2053 | |
| 181 | A | A | 0.0000 | |
| 182 | M | A | -0.2647 | |
| 183 | K | A | -1.4506 | |
| 184 | M | A | 0.0000 | |
| 185 | G | A | 0.0000 | |
| 186 | S | A | -0.7530 | |
| 187 | E | A | -1.0760 | |
| 188 | V | A | 0.0000 | |
| 189 | Y | A | -0.4924 | |
| 190 | H | A | -0.9987 | |
| 191 | Y | A | -0.6748 | |
| 192 | L | A | 0.0000 | |
| 193 | K | A | -1.3276 | |
| 194 | A | A | -1.2184 | |
| 195 | G | A | -1.8830 | |
| 196 | I | A | 0.0000 | |
| 197 | K | A | -2.2424 | |
| 198 | K | A | -2.8449 | |
| 199 | K | A | -2.5961 | |
| 200 | F | A | -1.5429 | |
| 201 | G | A | -1.1889 | |
| 202 | L | A | -0.3057 | |
| 203 | D | A | -1.0060 | |
| 204 | A | A | -0.9790 | |
| 205 | T | A | 0.0000 | |
| 206 | A | A | 0.3906 | |
| 207 | V | A | 0.6395 | |
| 208 | G | A | -1.2069 | |
| 209 | D | A | -2.8035 | |
| 210 | E | A | -2.6416 | |
| 211 | G | A | -1.0466 | |
| 212 | G | A | 0.0000 | |
| 213 | F | A | 0.0000 | |
| 214 | A | A | -0.2847 | |
| 215 | P | A | 0.0000 | |
| 216 | N | A | -1.1799 | |
| 217 | I | A | 0.0000 | |
| 218 | L | A | 0.2540 | |
| 219 | E | A | -0.9912 | |
| 220 | N | A | 0.0000 | |
| 221 | K | A | -1.7576 | |
| 222 | E | A | -1.2354 | |
| 223 | A | A | 0.0000 | |
| 224 | L | A | 0.0000 | |
| 225 | N | A | -2.1147 | |
| 226 | L | A | -1.5892 | |
| 227 | I | A | 0.0000 | |
| 228 | I | A | -1.6729 | |
| 229 | D | A | -2.6255 | |
| 230 | A | A | 0.0000 | |
| 231 | I | A | 0.0000 | |
| 232 | K | A | -2.6687 | |
| 233 | T | A | -1.4712 | |
| 234 | A | A | -1.2684 | |
| 235 | G | A | -1.7985 | |
| 236 | Y | A | -1.9276 | |
| 237 | E | A | -3.1741 | |
| 238 | G | A | -2.1190 | |
| 239 | K | A | -1.8627 | |
| 240 | I | A | 0.0000 | |
| 241 | K | A | -0.8785 | |
| 242 | I | A | 0.0000 | |
| 243 | G | A | 0.0000 | |
| 244 | M | A | -0.0763 | |
| 245 | D | A | -0.5232 | |
| 246 | V | A | -0.5529 | |
| 247 | A | A | -0.8802 | |
| 248 | A | A | -0.9070 | |
| 249 | S | A | -1.4812 | |
| 250 | E | A | -2.2868 | |
| 251 | F | A | 0.0000 | |
| 252 | H | A | -2.5042 | |
| 253 | K | A | -2.6723 | |
| 254 | N | A | -2.4955 | |
| 255 | G | A | -2.0983 | |
| 256 | K | A | -2.3273 | |
| 257 | Y | A | -1.4681 | |
| 258 | D | A | 0.0000 | |
| 259 | L | A | -0.3445 | |
| 260 | D | A | -1.2140 | |
| 261 | F | A | -1.6096 | |
| 262 | K | A | -1.7970 | |
| 263 | N | A | -2.7078 | |
| 264 | E | A | -3.2708 | |
| 265 | K | A | -3.3037 | |
| 266 | S | A | -2.5262 | |
| 267 | D | A | -2.4639 | |
| 268 | P | A | -1.3558 | |
| 269 | A | A | -0.5340 | |
| 270 | T | A | -0.6310 | |
| 271 | Y | A | -0.8675 | |
| 272 | L | A | -1.1601 | |
| 273 | E | A | -2.3460 | |
| 274 | P | A | -2.3091 | |
| 275 | D | A | -3.0164 | |
| 276 | A | A | -1.9348 | |
| 277 | L | A | 0.0000 | |
| 278 | K | A | -2.8100 | |
| 279 | N | A | -2.4639 | |
| 280 | L | A | -1.2084 | |
| 281 | Y | A | -0.9450 | |
| 282 | L | A | -0.9377 | |
| 283 | E | A | -2.1956 | |
| 284 | W | A | 0.0000 | |
| 285 | V | A | -0.3518 | |
| 286 | K | A | -1.7890 | |
| 287 | G | A | -1.5271 | |
| 288 | L | A | -0.9686 | |
| 289 | P | A | -0.8554 | |
| 290 | H | A | 0.0000 | |
| 291 | R | A | -0.6795 | |
| 292 | F | A | 1.0439 |