| Chain sequence(s) |
A: MLSSDHADIVRATLPAVGANGVEITGRFYSAMFAAHPELRHLFNQGNQANGEQRRALAGSVAAFAGHLVNPDSGTPFQQMLPRIAHKHASLGIRPEQYPVVGRHLMGAVADVLGDAVTPEVHAAWSEVYWLFATLLIAEEARLYQDAACDPAVPYRPWRVADRRDEAEDVFSLVLEPADGGEAPAHRPGQYVSVAVTLPDGLRQPRQYTLSRAAGDTVQITVRRVRGEGAAPDGAVSGYLFEHAAPGDELELSRPFGDVVVDDGEDPLVLISAGIGITPAAAVIDH
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:02)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:02)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:02)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:02)
[INFO] FoldX: Starting FoldX energy minimization (00:00:02)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:05:32)
[INFO] Main: Simulation completed successfully. (00:05:37)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 1 | M | A | 1.0159 | |
| 2 | L | A | 0.0000 | |
| 3 | S | A | -0.8592 | |
| 4 | S | A | -1.4571 | |
| 5 | D | A | -2.7335 | |
| 6 | H | A | -2.1609 | |
| 7 | A | A | -1.9293 | |
| 8 | D | A | -2.7488 | |
| 9 | I | A | -1.6629 | |
| 10 | V | A | 0.0000 | |
| 11 | R | A | -1.9138 | |
| 12 | A | A | -0.8601 | |
| 13 | T | A | -0.4178 | |
| 14 | L | A | -0.3039 | |
| 15 | P | A | -0.4820 | |
| 16 | A | A | -0.1172 | |
| 17 | V | A | 0.0096 | |
| 18 | G | A | -0.2535 | |
| 19 | A | A | -0.2055 | |
| 20 | N | A | -0.2714 | |
| 21 | G | A | 0.0000 | |
| 22 | V | A | -0.0322 | |
| 23 | E | A | -1.2761 | |
| 24 | I | A | 0.0000 | |
| 25 | T | A | 0.0000 | |
| 26 | G | A | -0.9795 | |
| 27 | R | A | -1.5805 | |
| 28 | F | A | 0.0000 | |
| 29 | Y | A | 0.0000 | |
| 30 | S | A | -0.5364 | |
| 31 | A | A | -0.3704 | |
| 32 | M | A | 0.0000 | |
| 33 | F | A | -0.5509 | |
| 34 | A | A | -0.3070 | |
| 35 | A | A | -0.2348 | |
| 36 | H | A | -0.9272 | |
| 37 | P | A | -1.5311 | |
| 38 | E | A | -2.4009 | |
| 39 | L | A | 0.0000 | |
| 40 | R | A | -1.9423 | |
| 41 | H | A | -1.5935 | |
| 42 | L | A | -0.6403 | |
| 43 | F | A | -0.6210 | |
| 44 | N | A | -0.8956 | |
| 45 | Q | A | -0.9157 | |
| 46 | G | A | -1.3987 | |
| 47 | N | A | -2.0222 | |
| 48 | Q | A | -1.6253 | |
| 49 | A | A | -1.2854 | |
| 50 | N | A | -2.3377 | |
| 51 | G | A | 0.0000 | |
| 52 | E | A | -3.0241 | |
| 53 | Q | A | -2.0559 | |
| 54 | R | A | -2.0896 | |
| 55 | R | A | -2.6115 | |
| 56 | A | A | -1.3545 | |
| 57 | L | A | -0.5862 | |
| 58 | A | A | -0.6078 | |
| 59 | G | A | -0.6627 | |
| 60 | S | A | -0.1628 | |
| 61 | V | A | 0.0760 | |
| 62 | A | A | -0.0845 | |
| 63 | A | A | -0.1291 | |
| 64 | F | A | 0.0000 | |
| 65 | A | A | 0.0000 | |
| 66 | G | A | -0.9822 | |
| 67 | H | A | -1.3326 | |
| 68 | L | A | 0.0000 | |
| 69 | V | A | 0.0000 | |
| 70 | N | A | -2.3064 | |
| 71 | P | A | -1.9638 | |
| 72 | D | A | -2.5930 | |
| 73 | S | A | -1.8227 | |
| 74 | G | A | -1.4272 | |
| 75 | T | A | -1.2425 | |
| 76 | P | A | -1.0205 | |
| 77 | F | A | 0.0000 | |
| 78 | Q | A | -1.9201 | |
| 79 | Q | A | -2.0735 | |
| 80 | M | A | -1.2150 | |
| 81 | L | A | -0.8356 | |
| 82 | P | A | -1.2284 | |
| 83 | R | A | -1.9640 | |
| 84 | I | A | -0.9384 | |
| 85 | A | A | 0.0000 | |
| 86 | H | A | -1.0970 | |
| 87 | K | A | -1.2538 | |
| 88 | H | A | -0.6653 | |
| 89 | A | A | 0.0000 | |
| 90 | S | A | 0.0000 | |
| 91 | L | A | 0.0275 | |
| 92 | G | A | 0.0000 | |
| 93 | I | A | -0.4042 | |
| 94 | R | A | -1.2289 | |
| 95 | P | A | -1.2041 | |
| 96 | E | A | -2.0525 | |
| 97 | Q | A | -1.1391 | |
| 98 | Y | A | 0.0000 | |
| 99 | P | A | -0.9760 | |
| 100 | V | A | -0.7780 | |
| 101 | V | A | -0.5351 | |
| 102 | G | A | 0.0000 | |
| 103 | R | A | -1.8217 | |
| 104 | H | A | -1.0648 | |
| 105 | L | A | 0.0000 | |
| 106 | M | A | -0.8865 | |
| 107 | G | A | -1.2952 | |
| 108 | A | A | 0.0000 | |
| 109 | V | A | 0.0000 | |
| 110 | A | A | -1.1337 | |
| 111 | D | A | -2.2386 | |
| 112 | V | A | -1.2750 | |
| 113 | L | A | -0.8346 | |
| 114 | G | A | -1.5017 | |
| 115 | D | A | -2.0344 | |
| 116 | A | A | -0.7568 | |
| 117 | V | A | -1.0205 | |
| 118 | T | A | -1.1167 | |
| 119 | P | A | -1.3195 | |
| 120 | E | A | -2.1076 | |
| 121 | V | A | -0.8267 | |
| 122 | H | A | -0.8674 | |
| 123 | A | A | -0.8561 | |
| 124 | A | A | 0.0000 | |
| 125 | W | A | 0.0000 | |
| 126 | S | A | -0.4921 | |
| 127 | E | A | -0.0198 | |
| 128 | V | A | 0.0000 | |
| 129 | Y | A | 0.0000 | |
| 130 | W | A | 0.7545 | |
| 131 | L | A | 0.9091 | |
| 132 | F | A | 0.0000 | |
| 133 | A | A | 0.0000 | |
| 134 | T | A | 0.7224 | |
| 135 | L | A | 1.0590 | |
| 136 | L | A | 0.0000 | |
| 137 | I | A | 0.0477 | |
| 138 | A | A | -0.0570 | |
| 139 | E | A | -0.5952 | |
| 140 | E | A | 0.0000 | |
| 141 | A | A | -1.5937 | |
| 142 | R | A | -2.7083 | |
| 143 | L | A | 0.0000 | |
| 144 | Y | A | 0.0000 | |
| 145 | Q | A | -2.9482 | |
| 146 | D | A | -2.8180 | |
| 147 | A | A | -1.7971 | |
| 148 | A | A | -1.5512 | |
| 149 | C | A | -1.1589 | |
| 150 | D | A | -1.3980 | |
| 151 | P | A | -0.4640 | |
| 152 | A | A | 0.2651 | |
| 153 | V | A | 1.2217 | |
| 154 | P | A | 0.1954 | |
| 155 | Y | A | -0.0540 | |
| 156 | R | A | -0.7351 | |
| 157 | P | A | -1.5446 | |
| 158 | W | A | 0.0000 | |
| 159 | R | A | -2.6509 | |
| 160 | V | A | 0.0000 | |
| 161 | A | A | -1.2786 | |
| 162 | D | A | -1.5394 | |
| 163 | R | A | -2.0464 | |
| 164 | R | A | -3.2127 | |
| 165 | D | A | -3.8377 | |
| 166 | E | A | -3.6607 | |
| 167 | A | A | -2.6367 | |
| 168 | E | A | -2.7981 | |
| 169 | D | A | -2.0017 | |
| 170 | V | A | 0.0000 | |
| 171 | F | A | 0.0000 | |
| 172 | S | A | 0.0000 | |
| 173 | L | A | 0.0000 | |
| 174 | V | A | -0.8867 | |
| 175 | L | A | 0.0000 | |
| 176 | E | A | -2.5659 | |
| 177 | P | A | 0.0000 | |
| 178 | A | A | -2.3576 | |
| 179 | D | A | -2.6355 | |
| 180 | G | A | -2.1048 | |
| 181 | G | A | -2.2164 | |
| 182 | E | A | -2.9039 | |
| 183 | A | A | -1.9613 | |
| 184 | P | A | -0.9486 | |
| 185 | A | A | -0.8027 | |
| 186 | H | A | 0.0000 | |
| 187 | R | A | -1.1717 | |
| 188 | P | A | 0.0000 | |
| 189 | G | A | 0.2780 | |
| 190 | Q | A | -0.0373 | |
| 191 | Y | A | -0.1689 | |
| 192 | V | A | 0.0000 | |
| 193 | S | A | 0.0000 | |
| 194 | V | A | 0.0000 | |
| 195 | A | A | 0.0000 | |
| 196 | V | A | 0.0000 | |
| 197 | T | A | -0.7159 | |
| 198 | L | A | -0.6897 | |
| 199 | P | A | -1.1673 | |
| 200 | D | A | -2.0835 | |
| 201 | G | A | -1.4257 | |
| 202 | L | A | -1.3438 | |
| 203 | R | A | -1.2342 | |
| 204 | Q | A | 0.0000 | |
| 205 | P | A | 0.0000 | |
| 206 | R | A | -0.3144 | |
| 207 | Q | A | -0.4401 | |
| 208 | Y | A | -0.1715 | |
| 209 | T | A | -0.0542 | |
| 210 | L | A | 0.0000 | |
| 211 | S | A | 0.0000 | |
| 212 | R | A | -1.3340 | |
| 213 | A | A | -1.1231 | |
| 214 | A | A | -1.3068 | |
| 215 | G | A | -1.8116 | |
| 216 | D | A | -2.6966 | |
| 217 | T | A | -1.8740 | |
| 218 | V | A | 0.0000 | |
| 219 | Q | A | -0.6114 | |
| 220 | I | A | 0.0000 | |
| 221 | T | A | -0.8303 | |
| 222 | V | A | 0.0000 | |
| 223 | R | A | -1.3026 | |
| 224 | R | A | -1.0738 | |
| 225 | V | A | -0.3861 | |
| 226 | R | A | -2.2920 | |
| 227 | G | A | -2.3394 | |
| 228 | E | A | -2.6008 | |
| 229 | G | A | -1.5525 | |
| 230 | A | A | -0.9020 | |
| 231 | A | A | -1.7103 | |
| 232 | P | A | -1.7761 | |
| 233 | D | A | -2.3022 | |
| 234 | G | A | -0.9536 | |
| 235 | A | A | -0.3988 | |
| 236 | V | A | 0.0000 | |
| 237 | S | A | 0.0000 | |
| 238 | G | A | -0.9041 | |
| 239 | Y | A | -0.5561 | |
| 240 | L | A | 0.0000 | |
| 241 | F | A | -0.9933 | |
| 242 | E | A | -2.0634 | |
| 243 | H | A | -1.8329 | |
| 244 | A | A | 0.0000 | |
| 245 | A | A | -1.5851 | |
| 246 | P | A | -1.4285 | |
| 247 | G | A | -1.6251 | |
| 248 | D | A | -2.2232 | |
| 249 | E | A | -2.5370 | |
| 250 | L | A | 0.0000 | |
| 251 | E | A | -1.2979 | |
| 252 | L | A | 0.0000 | |
| 253 | S | A | 0.0000 | |
| 254 | R | A | -0.5529 | |
| 255 | P | A | 0.0000 | |
| 256 | F | A | 0.0000 | |
| 257 | G | A | 0.0000 | |
| 258 | D | A | -0.2996 | |
| 259 | V | A | 1.2219 | |
| 260 | V | A | 0.5020 | |
| 261 | V | A | -0.2065 | |
| 262 | D | A | -2.6745 | |
| 263 | D | A | -3.2714 | |
| 264 | G | A | -2.9853 | |
| 265 | E | A | -3.2962 | |
| 266 | D | A | -2.7635 | |
| 267 | P | A | -0.4150 | |
| 268 | L | A | 1.8879 | |
| 269 | V | A | 3.0022 | |
| 270 | L | A | 3.1480 | |
| 271 | I | A | 3.0132 | |
| 272 | S | A | 1.5730 | |
| 273 | A | A | 0.6185 | |
| 274 | G | A | 0.0187 | |
| 275 | I | A | 0.5698 | |
| 276 | G | A | 0.6860 | |
| 277 | I | A | 1.6432 | |
| 278 | T | A | 0.0000 | |
| 279 | P | A | 0.7822 | |
| 280 | A | A | 0.0000 | |
| 281 | A | A | 0.4576 | |
| 282 | A | A | 0.0000 | |
| 283 | V | A | 0.6911 | |
| 284 | I | A | 1.2309 | |
| 285 | D | A | -0.7174 | |
| 286 | H | A | -1.1034 |