Project name: 8df4f4aa3653fb7

Status: done

Started: 2026-01-31 11:24:51
Chain sequence(s) B: VSQLQLSGPEMRKPGASVTISCRATGYTFNNYAIHWVRQQAGKRPEWMGWIDAGSGAIRFLQKFHDRVTITTDTSANNFFLDLRSLRSGDTAVYYCARDMDTVVTPNWGQGTLVTVSSAGGGGSGGGGSGGGGSQSALTQPASVSGSPGQSITISCTGTSSDIGGFNFVSWFQQHPGKAPKLIMFEVTSRPTDVPGRFSGSKSGNTASLTISGLQADDEADYYCFSYTGNRNPFGGRAVAGGGGSGGGGSGGGGSDIKLQSGAELARPGASVKMSCKTSGYTFTRYTMHWVKQRPGQGLEWIGYINPSRGYTNYNQKFKDKATLTTDKSSSTAYMQLSSLTSEDSAVYYCARYYDDHYCLDYWGQGTTLTVSSGGGGSGGGGSGGGGSDIQLTQSPAIMSASPGEKVTMTCRASSSVSYMNWYQQKSGTSPKRWIYDTSKVASGVPYRFSGSGSGTSYSLTISSMEAEDAATYYCQQWSSNPLTFGAGTKLELK
input PDB
Selected Chain(s) B
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
alphaCutter usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with B chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       PDB-Info: The input structure is globular. Max score is recommended for pH analysis.  (00:00:03)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:03)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:06:50)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/8df4f4aa3653fb7/tmp/folded.pdb                (00:06:50)
[INFO]       Main:     Simulation completed successfully.                                          (00:10:40)
Show buried residues

Minimal score value
-3.2584
Maximal score value
1.8137
Average score
-0.6509
Total score value
-321.5483

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
1 V B 1.4246
2 S B 0.2728
3 Q B -0.9870
4 L B 0.0000
5 Q B -1.8503
6 L B 0.0000
7 S B -0.8021
8 G B -0.7723
9 P B -0.0675
10 E B -0.1009
11 M B 0.2508
12 R B -1.2017
13 K B -2.2717
14 P B 0.0000
15 G B -1.6107
16 A B -1.0868
17 S B -0.9874
18 V B 0.0000
19 T B -0.3121
20 I B 0.0000
21 S B -0.4968
22 C B 0.0000
23 R B -1.8918
24 A B 0.0000
25 T B -0.6973
26 G B -0.0324
27 Y B -0.1768
28 T B -0.7946
29 F B 0.0000
30 N B -2.0635
31 N B -2.1710
32 Y B -1.2702
33 A B 0.0000
34 I B 0.0000
35 H B 0.0000
36 W B 0.0000
37 V B 0.0000
38 R B 0.0000
39 Q B -0.5662
40 Q B -0.7731
41 A B -0.7765
42 G B -1.4077
43 K B -2.1325
44 R B -1.8926
45 P B 0.0000
46 E B 0.0000
47 W B 0.0000
48 M B 0.0000
49 G B 0.0000
50 W B -0.0557
51 I B 0.0000
52 D B -0.9620
53 A B 0.0000
54 G B -1.5246
55 S B -0.8189
56 G B -0.6512
57 A B -0.1604
58 I B 0.1652
59 R B -1.4379
60 F B -1.4977
61 L B 0.0000
62 Q B -2.6255
63 K B -2.0534
64 F B 0.0000
65 H B -2.6114
66 D B -2.7507
67 R B 0.0000
68 V B 0.0000
69 T B -0.6252
70 I B 0.0000
71 T B -0.0619
72 T B -0.7381
73 D B -1.0872
74 T B -1.0097
75 S B -0.6052
76 A B -0.7897
77 N B -1.3108
78 N B -1.2068
79 F B 0.0000
80 F B -0.0406
81 L B 0.0000
82 D B -0.5082
83 L B 0.0000
84 R B -1.2992
85 S B -1.4219
86 L B 0.0000
87 R B -1.6701
88 S B -1.0112
89 G B -0.7931
90 D B 0.0000
91 T B 0.0431
92 A B 0.0000
93 V B 0.6055
94 Y B 0.0000
95 Y B 0.0000
96 C B 0.0000
97 A B 0.0000
98 R B 0.0000
99 D B 0.0000
100 M B -0.7911
101 D B -1.7593
102 T B -0.8911
103 V B -0.3653
104 V B 0.0000
105 T B 0.0000
106 P B -0.3017
107 N B -0.5386
108 W B -0.8126
109 G B 0.0000
110 Q B -1.7819
111 G B -0.7561
112 T B 0.0000
113 L B 0.8246
114 V B 0.0000
115 T B -0.0182
116 V B 0.0000
117 S B -0.8175
118 S B -1.0287
119 A B -0.7125
120 G B -1.3575
121 G B -1.2854
122 G B -1.3554
123 G B -1.5261
124 S B -1.5342
125 G B -1.1839
126 G B -1.4014
127 G B -1.3375
128 G B -1.7282
129 S B 0.0000
130 G B -1.2880
131 G B -1.2660
132 G B -1.2239
133 G B -1.5697
134 S B -1.3966
135 Q B -1.5406
136 S B -0.9921
137 A B -0.4922
138 L B 0.0000
139 T B -0.3859
140 Q B 0.0000
141 P B -0.3625
142 A B -0.4764
143 S B -0.5216
144 V B 0.0000
145 S B -0.7931
146 G B -0.9598
147 S B -0.7605
148 P B -1.1676
149 G B -1.0750
150 Q B -0.9327
151 S B -0.6853
152 I B 0.0000
153 T B -0.1749
154 I B 0.0000
155 S B -0.2443
156 C B 0.0000
157 T B -0.4629
158 G B 0.0000
159 T B -0.6378
160 S B -0.6394
161 S B -0.5999
162 D B 0.0000
163 I B 0.0000
164 G B -0.9285
165 G B -0.4211
166 F B 0.3554
167 N B -0.7822
168 F B -0.1385
169 V B 0.0000
170 S B 0.0000
171 W B 0.0000
172 F B 0.0000
173 Q B 0.0000
174 Q B 0.0000
175 H B -1.8289
176 P B -1.2489
177 G B -1.6182
178 K B -2.5178
179 A B -1.6481
180 P B 0.0000
181 K B -1.5850
182 L B 0.0000
183 I B 0.0000
184 M B 0.0000
185 F B -0.5235
186 E B -1.0343
187 V B 0.0000
188 T B -0.8192
189 S B -0.7999
190 R B -1.4328
191 P B -1.1245
192 T B -1.2780
193 D B -2.0646
194 V B 0.0000
195 P B -1.1300
196 G B -1.2065
197 R B -0.9513
198 F B 0.0000
199 S B -0.6291
200 G B -0.5969
201 S B -0.8257
202 K B -1.2741
203 S B -0.9285
204 G B -1.0277
205 N B -1.0972
206 T B -0.8064
207 A B 0.0000
208 S B -0.3568
209 L B 0.0000
210 T B -0.2822
211 I B 0.0000
212 S B -0.8159
213 G B -1.0187
214 L B 0.0000
215 Q B -2.0604
216 A B -1.8779
217 D B -2.6648
218 D B 0.0000
219 E B -2.6162
220 A B 0.0000
221 D B -0.8723
222 Y B 0.0000
223 Y B 0.0000
224 C B 0.0000
225 F B 0.0000
226 S B 0.0000
227 Y B 0.0612
228 T B 0.0000
229 G B -1.2689
230 N B -2.2094
231 R B -1.7160
232 N B 0.0000
233 P B 0.0000
234 F B 0.0000
235 G B 0.0000
236 G B -1.0280
237 R B -1.3724
238 A B 0.0000
239 V B -0.4645
240 A B 0.0000
241 G B -0.9486
242 G B -0.9983
243 G B -0.9702
244 G B -0.9538
245 S B -0.9001
246 G B -0.9361
247 G B -1.1201
248 G B -1.2520
249 G B -0.9178
250 S B -0.8036
251 G B -1.0363
252 G B -1.1823
253 G B -1.0592
254 G B -0.9409
255 S B -0.2285
256 D B 0.0000
257 I B 1.8137
258 K B 0.0000
259 L B 0.7156
260 Q B -0.1626
261 S B -0.8096
262 G B -0.6171
263 A B -0.3423
264 E B -0.5733
265 L B 0.5998
266 A B -0.6626
267 R B -2.1823
268 P B 0.0000
269 G B -1.5100
270 A B -1.0310
271 S B -1.1315
272 V B 0.0000
273 K B -2.1380
274 M B 0.0000
275 S B -0.7041
276 C B 0.0000
277 K B -0.6726
278 T B 0.0000
279 S B 0.2260
280 G B -0.0296
281 Y B -0.2144
282 T B -0.6506
283 F B 0.0000
284 T B -1.7643
285 R B -2.0748
286 Y B 0.0000
287 T B -0.6725
288 M B 0.0000
289 H B 0.0000
290 W B 0.0000
291 V B 0.0000
292 K B 0.0000
293 Q B -0.9281
294 R B -1.6127
295 P B -1.1652
296 G B -1.3898
297 Q B -1.8628
298 G B -1.0783
299 L B 0.0000
300 E B -0.7888
301 W B 0.0000
302 I B 0.0000
303 G B 0.0000
304 Y B 0.1183
305 I B 0.0000
306 N B -1.0412
307 P B 0.0000
308 S B -1.8008
309 R B -2.1382
310 G B -1.3257
311 Y B -0.2756
312 T B -0.1564
313 N B -0.5234
314 Y B -1.0616
315 N B 0.0000
316 Q B -2.3845
317 K B -2.5740
318 F B 0.0000
319 K B -3.2584
320 D B -3.1734
321 K B -2.2081
322 A B 0.0000
323 T B -1.1455
324 L B 0.0000
325 T B -0.4228
326 T B -1.2881
327 D B -1.8094
328 K B -2.4630
329 S B -1.3396
330 S B -1.2560
331 S B -1.3622
332 T B 0.0000
333 A B 0.0000
334 Y B -0.7008
335 M B 0.0000
336 Q B -1.4769
337 L B 0.0000
338 S B -1.1890
339 S B -1.1787
340 L B 0.0000
341 T B 0.0000
342 S B -1.6265
343 E B -2.1103
344 D B 0.0000
345 S B -0.7260
346 A B 0.0000
347 V B -0.0938
348 Y B 0.0000
349 Y B 0.0000
350 C B 0.0000
351 A B 0.0000
352 R B 0.0000
353 Y B -0.4916
354 Y B -1.2420
355 D B -2.5152
356 D B -2.4881
357 H B 0.0000
358 Y B -0.6395
359 C B 0.0000
360 L B 0.0000
361 D B -0.4169
362 Y B 0.2076
363 W B 0.1297
364 G B 0.0000
365 Q B -0.8444
366 G B -0.5451
367 T B 0.0000
368 T B -0.2942
369 L B 0.0000
370 T B -0.2442
371 V B 0.0000
372 S B -0.8874
373 S B -1.2399
374 G B -1.3762
375 G B -1.8994
376 G B -1.7083
377 G B -1.4379
378 S B -1.3626
379 G B -1.3422
380 G B -1.4646
381 G B -1.8498
382 G B -1.8467
383 S B -1.7940
384 G B -1.9877
385 G B -1.4950
386 G B -1.3978
387 G B -1.3641
388 S B -1.3845
389 D B -1.7531
390 I B 0.0000
391 Q B -1.5713
392 L B 0.0000
393 T B -0.5915
394 Q B 0.0000
395 S B -0.0050
396 P B 0.3890
397 A B 0.7522
398 I B 1.4343
399 M B 0.3840
400 S B -0.7471
401 A B 0.0000
402 S B -1.8157
403 P B -1.9883
404 G B -2.0743
405 E B -2.9087
406 K B -2.8523
407 V B 0.0000
408 T B -0.6368
409 M B 0.0000
410 T B -0.3215
411 C B 0.0000
412 R B -0.8997
413 A B 0.0000
414 S B -0.9599
415 S B -0.7078
416 S B -0.3299
417 V B 0.0000
418 S B -0.2729
419 Y B -0.0724
420 M B 0.0000
421 N B 0.0000
422 W B 0.0000
423 Y B 0.0000
424 Q B 0.0000
425 Q B 0.0000
426 K B -1.2950
427 S B -0.7638
428 G B -0.8877
429 T B -0.9291
430 S B -0.8181
431 P B 0.0000
432 K B -1.0673
433 R B -0.6580
434 W B -0.5362
435 I B 0.0000
436 Y B 0.0000
437 D B -1.0619
438 T B -0.7277
439 S B -1.2113
440 K B -1.6943
441 V B 0.0000
442 A B 0.0000
443 S B -1.0211
444 G B -0.5897
445 V B 0.0000
446 P B 0.2863
447 Y B 0.8976
448 R B -0.0971
449 F B 0.0000
450 S B -0.4793
451 G B 0.0000
452 S B 0.0000
453 G B -0.6162
454 S B -0.4152
455 G B 0.0000
456 T B 0.0000
457 S B -0.6104
458 Y B 0.0000
459 S B -0.4176
460 L B 0.0000
461 T B -0.5362
462 I B 0.0000
463 S B -1.3664
464 S B -1.7808
465 M B 0.0000
466 E B -2.3412
467 A B -1.8040
468 E B -2.3243
469 D B 0.0000
470 A B -1.5403
471 A B 0.0000
472 T B -0.5020
473 Y B 0.0000
474 Y B 0.0000
475 C B 0.0000
476 Q B 0.0000
477 Q B 0.0000
478 W B -0.0540
479 S B -0.2897
480 S B -0.9102
481 N B -1.5298
482 P B 0.0000
483 L B 0.0000
484 T B -0.5990
485 F B -0.1196
486 G B 0.0000
487 A B -0.4558
488 G B 0.0000
489 T B 0.0000
490 K B -0.4682
491 L B 0.0000
492 E B -1.4600
493 L B -1.2518
494 K B -1.7347
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is globular. Max score is recommended for pH analysis.

pH
Average A4D Score
Max A4D Score
4.0 -0.523 2.5247 View CSV PDB
4.5 -0.5512 2.5108 View CSV PDB
5.0 -0.5845 2.4882 View CSV PDB
5.5 -0.6163 2.4599 View CSV PDB
6.0 -0.6392 2.4308 View CSV PDB
6.5 -0.6487 2.4052 View CSV PDB
7.0 -0.6455 2.4436 View CSV PDB
7.5 -0.634 2.4986 View CSV PDB
8.0 -0.6177 2.5579 View CSV PDB
8.5 -0.5974 2.6186 View CSV PDB
9.0 -0.5725 2.7072 View CSV PDB