| Chain sequence(s) |
H: QVQLVESGGGLVQPGGSLRLSCAASGGDFSQYSLGWFRQAPGQGLEAVAAISADGSTTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAAGLDTGSTFVFSYWGQGTLVTVS
input PDB |
| Selected Chain(s) | H |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | VS107H,LQ100H |
| Energy difference between WT (input) and mutated protein (by FoldX) | 1.21083 kcal/mol
CAUTION: Your mutation/s can destabilize the protein structure |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with H chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimization (00:00:01)
[INFO] FoldX: Building mutant model (00:01:21)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:01:29)
[INFO] Main: Simulation completed successfully. (00:01:30)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 1 | Q | H | -2.0113 | |
| 2 | V | H | 0.0000 | |
| 3 | Q | H | -1.3301 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 1.2250 | |
| 6 | E | H | 0.0000 | |
| 7 | S | H | -0.2077 | |
| 8 | G | H | -0.8051 | |
| 9 | G | H | 0.1155 | |
| 10 | G | H | 0.7009 | |
| 11 | L | H | 1.4324 | |
| 12 | V | H | -0.0716 | |
| 13 | Q | H | -1.3803 | |
| 14 | P | H | -1.7219 | |
| 15 | G | H | -1.4997 | |
| 16 | G | H | -0.9922 | |
| 17 | S | H | -1.2102 | |
| 18 | L | H | -0.8602 | |
| 19 | R | H | -2.1199 | |
| 20 | L | H | 0.0000 | |
| 21 | S | H | -0.4089 | |
| 22 | C | H | 0.0000 | |
| 23 | A | H | -0.0441 | |
| 24 | A | H | 0.0000 | |
| 25 | S | H | -1.4495 | |
| 26 | G | H | -1.9550 | |
| 27 | G | H | -2.3808 | |
| 28 | D | H | -2.8149 | |
| 29 | F | H | 0.0000 | |
| 30 | S | H | -2.4031 | |
| 31 | Q | H | -2.3086 | |
| 32 | Y | H | -1.7262 | |
| 33 | S | H | 0.0000 | |
| 34 | L | H | 0.0000 | |
| 35 | G | H | 0.0000 | |
| 36 | W | H | 0.0000 | |
| 37 | F | H | -0.0109 | |
| 38 | R | H | -0.3683 | |
| 39 | Q | H | -0.7887 | |
| 40 | A | H | -1.0777 | |
| 41 | P | H | -0.9963 | |
| 42 | G | H | -1.2537 | |
| 43 | Q | H | -1.8844 | |
| 44 | G | H | -1.2479 | |
| 45 | L | H | -0.3713 | |
| 46 | E | H | -1.4881 | |
| 47 | A | H | -0.4395 | |
| 48 | V | H | 0.0000 | |
| 49 | A | H | 0.0000 | |
| 50 | A | H | 0.0000 | |
| 51 | I | H | 0.0000 | |
| 52 | S | H | -1.1398 | |
| 53 | A | H | -1.8147 | |
| 54 | D | H | -2.4055 | |
| 55 | G | H | -1.4979 | |
| 56 | S | H | -0.8962 | |
| 57 | T | H | -0.3602 | |
| 58 | T | H | 0.3470 | |
| 59 | Y | H | 0.5357 | |
| 60 | Y | H | -0.3955 | |
| 61 | A | H | -1.3426 | |
| 62 | D | H | -2.3566 | |
| 63 | S | H | -1.7968 | |
| 64 | V | H | 0.0000 | |
| 65 | K | H | -2.3879 | |
| 66 | G | H | -1.6225 | |
| 67 | R | H | 0.0000 | |
| 68 | F | H | 0.0000 | |
| 69 | T | H | -0.7302 | |
| 70 | I | H | 0.0000 | |
| 71 | S | H | -0.5655 | |
| 72 | R | H | 0.0000 | |
| 73 | D | H | -2.4449 | |
| 74 | N | H | -3.1606 | |
| 75 | S | H | -2.0650 | |
| 76 | K | H | -2.7283 | |
| 77 | N | H | -2.4457 | |
| 78 | T | H | -1.2408 | |
| 79 | L | H | 0.0000 | |
| 80 | Y | H | 0.0000 | |
| 81 | L | H | 0.0000 | |
| 82 | Q | H | -1.2600 | |
| 83 | M | H | 0.0000 | |
| 84 | N | H | -1.3464 | |
| 85 | S | H | -1.2299 | |
| 86 | L | H | 0.0000 | |
| 87 | R | H | -2.7003 | |
| 88 | A | H | -1.9328 | |
| 89 | E | H | -2.3932 | |
| 90 | D | H | 0.0000 | |
| 91 | T | H | -0.4978 | |
| 92 | A | H | 0.0000 | |
| 93 | V | H | 0.9398 | |
| 94 | Y | H | 0.0000 | |
| 95 | Y | H | 0.4103 | |
| 96 | C | H | 0.0000 | |
| 97 | A | H | 0.0000 | |
| 98 | A | H | 0.0000 | |
| 99 | G | H | 0.0000 | |
| 100 | Q | H | -1.8249 | mutated: LQ100H |
| 101 | D | H | -1.8263 | |
| 102 | T | H | -1.1566 | |
| 103 | G | H | -1.0319 | |
| 104 | S | H | -0.5396 | |
| 105 | T | H | -0.6396 | |
| 106 | F | H | -0.6304 | |
| 107 | S | H | -0.6462 | mutated: VS107H |
| 108 | F | H | -0.0946 | |
| 109 | S | H | -0.0320 | |
| 110 | Y | H | -0.0673 | |
| 111 | W | H | 0.4524 | |
| 112 | G | H | 0.0062 | |
| 113 | Q | H | -0.6346 | |
| 114 | G | H | 0.1705 | |
| 115 | T | H | 0.6453 | |
| 116 | L | H | 1.6249 | |
| 117 | V | H | 0.0000 | |
| 118 | T | H | 0.3515 | |
| 119 | V | H | 0.0000 | |
| 120 | S | H | -0.8131 |