| Chain sequence(s) |
A: EVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTALYYCAKDSRGYGDYRLGGAYWGQGTLVTVSSGGGGSGGGGSGGGGSEIVMTQSPATLSVSPGERATLSCRASQSVSSNLAWYQQKPGQAPRLLIYGASTRATGIPARFSGSGSGTEFTLTISSLQSEDFAVYYCQQYNNWPWTFGQGTKVEIK
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | SR21A,RV19A |
| Energy difference between WT (input) and mutated protein (by FoldX) | 0.219542 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimization (00:00:01)
[INFO] FoldX: Building mutant model (00:00:58)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:01:30)
[INFO] Main: Simulation completed successfully. (00:01:31)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 1 | E | A | -2.1974 | |
| 2 | V | A | -1.4114 | |
| 3 | Q | A | -1.3833 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.9707 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.1354 | |
| 8 | G | A | -0.2144 | |
| 9 | G | A | 0.4286 | |
| 10 | G | A | 0.9120 | |
| 11 | L | A | 1.4804 | |
| 12 | V | A | -0.2553 | |
| 13 | Q | A | -1.4769 | |
| 14 | P | A | -1.8527 | |
| 15 | G | A | -2.0315 | |
| 16 | R | A | -2.6553 | |
| 17 | S | A | -1.3475 | |
| 18 | L | A | 0.3217 | |
| 19 | V | A | 0.9972 | mutated: RV19A |
| 20 | L | A | 0.0000 | |
| 21 | R | A | -0.7823 | mutated: SR21A |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.3434 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -1.0727 | |
| 26 | G | A | -1.3430 | |
| 27 | F | A | -0.8162 | |
| 28 | T | A | -0.5969 | |
| 29 | F | A | 0.0000 | |
| 30 | D | A | -2.0071 | |
| 31 | D | A | -1.1454 | |
| 32 | Y | A | 0.0000 | |
| 33 | A | A | 0.0000 | |
| 34 | M | A | 0.0000 | |
| 35 | H | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | V | A | 0.0000 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -0.7697 | |
| 40 | A | A | -1.1399 | |
| 41 | P | A | -1.0067 | |
| 42 | G | A | -1.4527 | |
| 43 | K | A | -2.4266 | |
| 44 | G | A | -1.6293 | |
| 45 | L | A | 0.0000 | |
| 46 | E | A | -1.2658 | |
| 47 | W | A | 0.0000 | |
| 48 | V | A | 0.0000 | |
| 49 | S | A | 0.0000 | |
| 50 | G | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | S | A | -0.3783 | |
| 53 | W | A | -1.0454 | |
| 54 | N | A | -1.6797 | |
| 55 | S | A | -0.9084 | |
| 56 | G | A | -0.6173 | |
| 57 | S | A | 0.1187 | |
| 58 | I | A | 1.1861 | |
| 59 | G | A | 0.3920 | |
| 60 | Y | A | -0.4667 | |
| 61 | A | A | -1.4211 | |
| 62 | D | A | -2.7080 | |
| 63 | S | A | -1.9988 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.6160 | |
| 66 | G | A | -1.7464 | |
| 67 | R | A | -1.5601 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.3446 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.3700 | |
| 72 | R | A | -1.3398 | |
| 73 | D | A | -1.6700 | |
| 74 | N | A | -2.2230 | |
| 75 | A | A | -1.5678 | |
| 76 | K | A | -2.2854 | |
| 77 | N | A | -1.9428 | |
| 78 | S | A | 0.0000 | |
| 79 | L | A | 0.0000 | |
| 80 | Y | A | -0.2830 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -0.2722 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.3974 | |
| 85 | S | A | -1.6542 | |
| 86 | L | A | 0.0000 | |
| 87 | R | A | -2.3039 | |
| 88 | A | A | -1.6705 | |
| 89 | E | A | -2.3882 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.4174 | |
| 92 | A | A | 0.0000 | |
| 93 | L | A | 0.5096 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | 0.0000 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | K | A | 0.0000 | |
| 99 | D | A | 0.0000 | |
| 100 | S | A | 0.0000 | |
| 101 | R | A | -0.8925 | |
| 102 | G | A | -0.3821 | |
| 103 | Y | A | 0.6628 | |
| 104 | G | A | -0.1075 | |
| 105 | D | A | -0.3045 | |
| 106 | Y | A | 0.2342 | |
| 107 | R | A | -1.3592 | |
| 108 | L | A | -0.4460 | |
| 109 | G | A | -0.4856 | |
| 110 | G | A | 0.0000 | |
| 111 | A | A | 0.0000 | |
| 112 | Y | A | 0.0126 | |
| 113 | W | A | -0.1679 | |
| 114 | G | A | 0.0000 | |
| 115 | Q | A | -1.0963 | |
| 116 | G | A | 0.0000 | |
| 117 | T | A | 0.2521 | |
| 118 | L | A | 1.1269 | |
| 119 | V | A | 0.0000 | |
| 120 | T | A | 0.3763 | |
| 121 | V | A | 0.0000 | |
| 122 | S | A | -0.8022 | |
| 123 | S | A | -0.9925 | |
| 124 | G | A | -1.0931 | |
| 125 | G | A | -1.1046 | |
| 126 | G | A | -1.1643 | |
| 127 | G | A | -1.1640 | |
| 128 | S | A | -0.9288 | |
| 129 | G | A | -1.3672 | |
| 130 | G | A | -1.3838 | |
| 131 | G | A | -1.4875 | |
| 132 | G | A | -1.1202 | |
| 133 | S | A | -1.0105 | |
| 134 | G | A | -1.1428 | |
| 135 | G | A | -1.7322 | |
| 136 | G | A | -1.5713 | |
| 137 | G | A | -1.6987 | |
| 138 | S | A | -1.2743 | |
| 139 | E | A | -1.7316 | |
| 140 | I | A | 0.0000 | |
| 141 | V | A | 0.6936 | |
| 142 | M | A | 0.0000 | |
| 143 | T | A | -0.6553 | |
| 144 | Q | A | 0.0000 | |
| 145 | S | A | -0.6996 | |
| 146 | P | A | -0.3234 | |
| 147 | A | A | -0.4655 | |
| 148 | T | A | -0.4757 | |
| 149 | L | A | -0.1690 | |
| 150 | S | A | -0.3728 | |
| 151 | V | A | 0.0000 | |
| 152 | S | A | -1.2021 | |
| 153 | P | A | -1.4397 | |
| 154 | G | A | -1.9317 | |
| 155 | E | A | -2.7676 | |
| 156 | R | A | -2.8685 | |
| 157 | A | A | 0.0000 | |
| 158 | T | A | -0.5487 | |
| 159 | L | A | 0.0000 | |
| 160 | S | A | -0.9087 | |
| 161 | C | A | 0.0000 | |
| 162 | R | A | -2.2740 | |
| 163 | A | A | 0.0000 | |
| 164 | S | A | -1.0376 | |
| 165 | Q | A | -1.7525 | |
| 166 | S | A | -1.5212 | |
| 167 | V | A | 0.0000 | |
| 168 | S | A | -0.9917 | |
| 169 | S | A | -0.8810 | |
| 170 | N | A | -0.8519 | |
| 171 | L | A | 0.0000 | |
| 172 | A | A | 0.0000 | |
| 173 | W | A | 0.0000 | |
| 174 | Y | A | 0.0000 | |
| 175 | Q | A | 0.0000 | |
| 176 | Q | A | 0.0000 | |
| 177 | K | A | -1.4865 | |
| 178 | P | A | -1.0275 | |
| 179 | G | A | -1.4718 | |
| 180 | Q | A | -2.1413 | |
| 181 | A | A | -1.4122 | |
| 182 | P | A | 0.0000 | |
| 183 | R | A | -1.2937 | |
| 184 | L | A | -0.4300 | |
| 185 | L | A | 0.0000 | |
| 186 | I | A | 0.0000 | |
| 187 | Y | A | -0.2405 | |
| 188 | G | A | -0.5380 | |
| 189 | A | A | 0.0000 | |
| 190 | S | A | -0.7008 | |
| 191 | T | A | -0.6479 | |
| 192 | R | A | -0.9831 | |
| 193 | A | A | 0.0000 | |
| 194 | T | A | -0.6081 | |
| 195 | G | A | -0.5447 | |
| 196 | I | A | -0.4553 | |
| 197 | P | A | -0.3244 | |
| 198 | A | A | -0.3278 | |
| 199 | R | A | -0.6702 | |
| 200 | F | A | 0.0000 | |
| 201 | S | A | -0.5315 | |
| 202 | G | A | 0.0000 | |
| 203 | S | A | -0.7709 | |
| 204 | G | A | -1.2972 | |
| 205 | S | A | -1.3006 | |
| 206 | G | A | -1.4027 | |
| 207 | T | A | -1.9914 | |
| 208 | E | A | -2.7411 | |
| 209 | F | A | 0.0000 | |
| 210 | T | A | -0.8736 | |
| 211 | L | A | 0.0000 | |
| 212 | T | A | -0.5997 | |
| 213 | I | A | 0.0000 | |
| 214 | S | A | -1.4413 | |
| 215 | S | A | -1.7851 | |
| 216 | L | A | 0.0000 | |
| 217 | Q | A | -1.5489 | |
| 218 | S | A | -0.8875 | |
| 219 | E | A | -1.4836 | |
| 220 | D | A | 0.0000 | |
| 221 | F | A | -0.1912 | |
| 222 | A | A | 0.0000 | |
| 223 | V | A | -0.3024 | |
| 224 | Y | A | 0.0000 | |
| 225 | Y | A | 0.0000 | |
| 226 | C | A | 0.0000 | |
| 227 | Q | A | 0.0000 | |
| 228 | Q | A | 0.0000 | |
| 229 | Y | A | 0.0000 | |
| 230 | N | A | -1.0585 | |
| 231 | N | A | -1.0997 | |
| 232 | W | A | -0.1993 | |
| 233 | P | A | -0.6811 | |
| 234 | W | A | 0.0000 | |
| 235 | T | A | 0.0000 | |
| 236 | F | A | -0.0098 | |
| 237 | G | A | 0.0000 | |
| 238 | Q | A | -1.4816 | |
| 239 | G | A | 0.0000 | |
| 240 | T | A | 0.0000 | |
| 241 | K | A | -1.1945 | |
| 242 | V | A | 0.0000 | |
| 243 | E | A | -0.1860 | |
| 244 | I | A | 0.8115 | |
| 245 | K | A | -0.9286 |