| Chain sequence(s) |
A: RDLEVVAATPTSLLISWDAPAVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPISINYRTEI
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | No |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:01)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:00:01)
[INFO] Main: Simulation completed successfully. (00:00:02)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 6 | R | A | -2.1818 | |
| 7 | D | A | -2.8720 | |
| 8 | L | A | 0.0000 | |
| 9 | E | A | -1.9049 | |
| 10 | V | A | 0.1728 | |
| 11 | V | A | 1.1021 | |
| 12 | A | A | 0.6991 | |
| 13 | A | A | 0.2740 | |
| 14 | T | A | -0.1885 | |
| 15 | P | A | -0.6119 | |
| 16 | T | A | -0.7648 | |
| 17 | S | A | -0.5825 | |
| 18 | L | A | 0.0000 | |
| 19 | L | A | 0.6567 | |
| 20 | I | A | 0.0000 | |
| 21 | S | A | -0.9833 | |
| 22 | W | A | 0.0000 | |
| 23 | D | A | -2.7559 | |
| 24 | A | A | -1.3192 | |
| 25 | P | A | -0.5539 | |
| 26 | A | A | 0.1144 | |
| 27 | V | A | 0.5190 | |
| 28 | T | A | -0.3390 | |
| 29 | V | A | -1.0559 | |
| 30 | R | A | -1.9790 | |
| 31 | Y | A | -0.9709 | |
| 32 | Y | A | 0.0000 | |
| 33 | R | A | -0.6970 | |
| 34 | I | A | 0.0000 | |
| 35 | T | A | -0.4727 | |
| 36 | Y | A | -0.3312 | |
| 37 | G | A | -0.9096 | |
| 38 | E | A | -1.9121 | |
| 39 | T | A | -1.4264 | |
| 40 | G | A | -1.3809 | |
| 41 | G | A | -1.6086 | |
| 42 | N | A | -1.6887 | |
| 43 | S | A | -1.0242 | |
| 44 | P | A | -0.4032 | |
| 45 | V | A | 0.3244 | |
| 46 | Q | A | -1.0348 | |
| 47 | E | A | -1.5008 | |
| 48 | F | A | -0.5983 | |
| 49 | T | A | -0.2814 | |
| 50 | V | A | 0.0000 | |
| 51 | P | A | -1.1788 | |
| 52 | G | A | -1.3648 | |
| 53 | S | A | -1.3765 | |
| 54 | K | A | -2.0524 | |
| 55 | S | A | -1.4407 | |
| 56 | T | A | -0.7432 | |
| 57 | A | A | -0.1682 | |
| 58 | T | A | 0.1076 | |
| 59 | I | A | 0.0000 | |
| 60 | S | A | -0.6325 | |
| 61 | G | A | -0.9904 | |
| 62 | L | A | 0.0000 | |
| 63 | K | A | -2.0934 | |
| 64 | P | A | -1.0008 | |
| 65 | G | A | -0.7122 | |
| 66 | V | A | -1.2148 | |
| 67 | D | A | -2.3147 | |
| 68 | Y | A | 0.0000 | |
| 69 | T | A | -0.8196 | |
| 70 | I | A | 0.0000 | |
| 71 | T | A | 0.0000 | |
| 72 | V | A | 0.0000 | |
| 73 | Y | A | -0.1925 | |
| 74 | A | A | 0.0000 | |
| 75 | V | A | 0.0000 | |
| 76 | T | A | 0.0000 | |
| 77 | G | A | -2.2805 | |
| 78 | R | A | -2.8500 | |
| 79 | G | A | -2.3452 | |
| 80 | D | A | -2.6026 | |
| 81 | S | A | -1.2919 | |
| 82 | P | A | -1.0970 | |
| 83 | A | A | -1.1920 | |
| 84 | S | A | -1.2463 | |
| 85 | S | A | -0.9733 | |
| 86 | K | A | -1.8238 | |
| 87 | P | A | -1.0246 | |
| 88 | I | A | -0.9170 | |
| 89 | S | A | -0.8543 | |
| 90 | I | A | -0.7092 | |
| 91 | N | A | -1.7737 | |
| 92 | Y | A | -1.6204 | |
| 93 | R | A | -2.3754 | |
| 94 | T | A | 0.0000 | |
| 95 | E | A | -0.8239 | |
| 96 | I | A | 0.9664 |