Chain sequence(s) |
A: MKTFLIFVLLAMAMKIATAARELNPSNKELQSPQQSFSYQQQPFPQQPYPQQPYPSQQPYPSQQPFPTPQQQFPEQSQQPFTQPQQPTPIQPQQPFPQQPQQPQQPFPQPQQPFPWQPQQPFPQTQQSFPLQPQQPFPQQPQQPFPQPQLPFPQQSEQIIPQQLQQPFPLQPQQPFPQQPQQPFPQPQQPIPVQPQQSFPQQSQQSQQPFAQPQQLFPELQQPIPQQPQQPFPLQPQQPFPQQPQQPFPQQPQQSFPQQPQQPYPQQQPYGSSLTSIGGQ
input PDB |
Selected Chain(s) | A |
Distance of aggregation | 10 Å |
FoldX usage | No |
pH calculations | No |
alphaCutter usage | No |
Dynamic mode | No |
Automated mutations | No |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:00) [INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:00:01) [INFO] Main: Simulation completed successfully. (00:00:02) |
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan4D score | mutation |
---|---|---|---|---|
1 | M | A | 1.3965 | |
2 | K | A | 0.5400 | |
3 | T | A | 2.1830 | |
4 | F | A | 4.3786 | |
5 | L | A | 4.9502 | |
6 | I | A | 5.6507 | |
7 | F | A | 5.8498 | |
8 | V | A | 5.8124 | |
9 | L | A | 5.6510 | |
10 | L | A | 4.6939 | |
11 | A | A | 3.5547 | |
12 | M | A | 3.3240 | |
13 | A | A | 2.5974 | |
14 | M | A | 1.8503 | |
15 | K | A | 0.3770 | |
16 | I | A | 1.6235 | |
17 | A | A | 0.4529 | |
18 | T | A | -0.5034 | |
19 | A | A | -0.3773 | |
20 | A | A | -0.8488 | |
21 | R | A | -2.3298 | |
22 | E | A | -2.3548 | |
23 | L | A | -0.5406 | |
24 | N | A | -1.9597 | |
25 | P | A | -1.8213 | |
26 | S | A | -2.0163 | |
27 | N | A | -2.9546 | |
28 | K | A | -3.1100 | |
29 | E | A | -2.7756 | |
30 | L | A | -0.7099 | |
31 | Q | A | -1.7056 | |
32 | S | A | -1.2456 | |
33 | P | A | -1.4873 | |
34 | Q | A | -1.9551 | |
35 | Q | A | -1.4425 | |
36 | S | A | -0.1235 | |
37 | F | A | 1.4277 | |
38 | S | A | 0.6404 | |
39 | Y | A | 0.6221 | |
40 | Q | A | -1.3012 | |
41 | Q | A | -1.7575 | |
42 | Q | A | -1.5663 | |
43 | P | A | -0.6115 | |
44 | F | A | 0.7137 | |
45 | P | A | -0.4843 | |
46 | Q | A | -1.2945 | |
47 | Q | A | -1.4003 | |
48 | P | A | -0.7869 | |
49 | Y | A | 0.0972 | |
50 | P | A | -0.7893 | |
51 | Q | A | -1.4720 | |
52 | Q | A | -1.4931 | |
53 | P | A | -0.6388 | |
54 | Y | A | 0.3645 | |
55 | P | A | -0.4293 | |
56 | S | A | -0.9514 | |
57 | Q | A | -1.6412 | |
58 | Q | A | -1.6891 | |
59 | P | A | -0.6244 | |
60 | Y | A | 0.3532 | |
61 | P | A | -0.4337 | |
62 | S | A | -0.9574 | |
63 | Q | A | -1.5369 | |
64 | Q | A | -1.5109 | |
65 | P | A | -0.3078 | |
66 | F | A | 1.1439 | |
67 | P | A | 0.2166 | |
68 | T | A | -0.3188 | |
69 | P | A | -1.2006 | |
70 | Q | A | -2.0466 | |
71 | Q | A | -1.9314 | |
72 | Q | A | -1.5384 | |
73 | F | A | 0.0741 | |
74 | P | A | -1.0183 | |
75 | E | A | -2.4192 | |
76 | Q | A | -2.4754 | |
77 | S | A | -2.3053 | |
78 | Q | A | -2.2708 | |
79 | Q | A | -1.6187 | |
80 | P | A | -0.4187 | |
81 | F | A | 0.9003 | |
82 | T | A | -0.1858 | |
83 | Q | A | -1.3101 | |
84 | P | A | -1.5739 | |
85 | Q | A | -2.3232 | |
86 | Q | A | -2.1928 | |
87 | P | A | -0.9841 | |
88 | T | A | -0.4060 | |
89 | P | A | 0.0891 | |
90 | I | A | 1.0039 | |
91 | Q | A | -0.8973 | |
92 | P | A | -1.2797 | |
93 | Q | A | -1.7389 | |
94 | Q | A | -1.6669 | |
95 | P | A | -0.4885 | |
96 | F | A | 0.7514 | |
97 | P | A | -0.4846 | |
98 | Q | A | -1.6667 | |
99 | Q | A | -2.1922 | |
100 | P | A | -2.1039 | |
101 | Q | A | -2.6364 | |
102 | Q | A | -2.5963 | |
103 | P | A | -2.0950 | |
104 | Q | A | -2.1845 | |
105 | Q | A | -1.6491 | |
106 | P | A | -0.4501 | |
107 | F | A | 0.8826 | |
108 | P | A | -0.2911 | |
109 | Q | A | -1.4584 | |
110 | P | A | -1.6014 | |
111 | Q | A | -2.0889 | |
112 | Q | A | -1.6561 | |
113 | P | A | -0.1105 | |
114 | F | A | 1.4020 | |
115 | P | A | 0.7376 | |
116 | W | A | 0.7262 | |
117 | Q | A | -1.0202 | |
118 | P | A | -1.4954 | |
119 | Q | A | -1.8537 | |
120 | Q | A | -1.6540 | |
121 | P | A | -0.4667 | |
122 | F | A | 0.8827 | |
123 | P | A | -0.2842 | |
124 | Q | A | -1.3663 | |
125 | T | A | -1.4545 | |
126 | Q | A | -1.9990 | |
127 | Q | A | -1.5585 | |
128 | S | A | -0.0565 | |
129 | F | A | 1.4809 | |
130 | P | A | 0.8500 | |
131 | L | A | 1.0937 | |
132 | Q | A | -0.8644 | |
133 | P | A | -1.4186 | |
134 | Q | A | -1.8155 | |
135 | Q | A | -1.6812 | |
136 | P | A | -0.5001 | |
137 | F | A | 0.7445 | |
138 | P | A | -0.5078 | |
139 | Q | A | -1.6540 | |
140 | Q | A | -2.2145 | |
141 | P | A | -2.1459 | |
142 | Q | A | -2.1889 | |
143 | Q | A | -1.6592 | |
144 | P | A | -0.4685 | |
145 | F | A | 0.8487 | |
146 | P | A | -0.3517 | |
147 | Q | A | -1.0883 | |
148 | P | A | -0.8294 | |
149 | Q | A | -0.7546 | |
150 | L | A | 1.0779 | |
151 | P | A | 0.9309 | |
152 | F | A | 1.4558 | |
153 | P | A | -0.0679 | |
154 | Q | A | -1.6404 | |
155 | Q | A | -2.2375 | |
156 | S | A | -2.0611 | |
157 | E | A | -2.1016 | |
158 | Q | A | -0.8311 | |
159 | I | A | 1.6916 | |
160 | I | A | 1.8391 | |
161 | P | A | 0.3792 | |
162 | Q | A | -0.8495 | |
163 | Q | A | -1.3229 | |
164 | L | A | -0.3342 | |
165 | Q | A | -1.3364 | |
166 | Q | A | -1.2035 | |
167 | P | A | 0.1403 | |
168 | F | A | 1.4942 | |
169 | P | A | 0.8437 | |
170 | L | A | 1.0856 | |
171 | Q | A | -0.8534 | |
172 | P | A | -1.4248 | |
173 | Q | A | -1.8118 | |
174 | Q | A | -1.6812 | |
175 | P | A | -0.4792 | |
176 | F | A | 0.7578 | |
177 | P | A | -0.4905 | |
178 | Q | A | -1.6521 | |
179 | Q | A | -2.2031 | |
180 | P | A | -2.1158 | |
181 | Q | A | -2.1773 | |
182 | Q | A | -1.6636 | |
183 | P | A | -0.4872 | |
184 | F | A | 0.8398 | |
185 | P | A | -0.3574 | |
186 | Q | A | -1.4469 | |
187 | P | A | -1.6533 | |
188 | Q | A | -2.0826 | |
189 | Q | A | -1.6614 | |
190 | P | A | -0.0184 | |
191 | I | A | 1.6418 | |
192 | P | A | 0.9657 | |
193 | V | A | 1.3610 | |
194 | Q | A | -0.7531 | |
195 | P | A | -1.3421 | |
196 | Q | A | -1.7728 | |
197 | Q | A | -1.6392 | |
198 | S | A | -0.4844 | |
199 | F | A | 0.7386 | |
200 | P | A | -0.4899 | |
201 | Q | A | -1.6602 | |
202 | Q | A | -2.2025 | |
203 | S | A | -2.1480 | |
204 | Q | A | -2.6389 | |
205 | Q | A | -2.5746 | |
206 | S | A | -2.0779 | |
207 | Q | A | -2.1769 | |
208 | Q | A | -1.5940 | |
209 | P | A | -0.3013 | |
210 | F | A | 1.0866 | |
211 | A | A | 0.1683 | |
212 | Q | A | -1.2308 | |
213 | P | A | -1.4933 | |
214 | Q | A | -1.5229 | |
215 | Q | A | -0.7141 | |
216 | L | A | 1.2563 | |
217 | F | A | 1.8053 | |
218 | P | A | 0.3488 | |
219 | E | A | -0.9702 | |
220 | L | A | -0.1124 | |
221 | Q | A | -1.3993 | |
222 | Q | A | -1.1968 | |
223 | P | A | -0.2363 | |
224 | I | A | 0.8064 | |
225 | P | A | -0.4741 | |
226 | Q | A | -1.6318 | |
227 | Q | A | -2.1960 | |
228 | P | A | -2.1237 | |
229 | Q | A | -2.2005 | |
230 | Q | A | -1.6776 | |
231 | P | A | -0.0817 | |
232 | F | A | 1.4889 | |
233 | P | A | 0.8531 | |
234 | L | A | 1.0921 | |
235 | Q | A | -0.8525 | |
236 | P | A | -1.4021 | |
237 | Q | A | -1.8190 | |
238 | Q | A | -1.6707 | |
239 | P | A | -0.4620 | |
240 | F | A | 0.7816 | |
241 | P | A | -0.4655 | |
242 | Q | A | -1.6545 | |
243 | Q | A | -2.2000 | |
244 | P | A | -2.1029 | |
245 | Q | A | -2.1905 | |
246 | Q | A | -1.6669 | |
247 | P | A | -0.4690 | |
248 | F | A | 0.7728 | |
249 | P | A | -0.4847 | |
250 | Q | A | -1.6634 | |
251 | Q | A | -2.2074 | |
252 | P | A | -2.1185 | |
253 | Q | A | -2.1889 | |
254 | Q | A | -1.6367 | |
255 | S | A | -0.4460 | |
256 | F | A | 0.7706 | |
257 | P | A | -0.4840 | |
258 | Q | A | -1.6603 | |
259 | Q | A | -2.2006 | |
260 | P | A | -2.1201 | |
261 | Q | A | -2.2772 | |
262 | Q | A | -1.8333 | |
263 | P | A | -0.7627 | |
264 | Y | A | 0.1356 | |
265 | P | A | -0.9218 | |
266 | Q | A | -1.9590 | |
267 | Q | A | -2.1187 | |
268 | Q | A | -1.9688 | |
269 | P | A | -0.8078 | |
270 | Y | A | 0.3718 | |
271 | G | A | 0.0097 | |
272 | S | A | 0.1564 | |
273 | S | A | 0.3990 | |
274 | L | A | 1.4864 | |
275 | T | A | 1.0351 | |
276 | S | A | 1.0065 | |
277 | I | A | 1.7672 | |
278 | G | A | -0.0052 | |
279 | G | A | -0.8974 | |
280 | Q | A | -1.5228 |