| Chain sequence(s) |
A: DVQLVESGGGLVQAGGSLRLSCTVSTSRFSGVGRMAWYRQAPGKQREKVAEITRAGSRTYADAVKGRFTISRDNAKNTVYLQMDRLKPEDTAVYWCVRARWQSGTPRTPGTQVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | VR5A |
| Energy difference between WT (input) and mutated protein (by FoldX) | -0.603182 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:04)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:04)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:04)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:04)
[INFO] FoldX: Starting FoldX energy minimization (00:00:05)
[INFO] FoldX: Building mutant model (00:00:41)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:00:57)
[INFO] Main: Simulation completed successfully. (00:00:57)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 1 | D | A | -1.8697 | |
| 2 | V | A | -1.5843 | |
| 3 | Q | A | -1.9070 | |
| 4 | L | A | -1.8386 | |
| 5 | R | A | -2.2374 | mutated: VR5A |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -1.1860 | |
| 8 | G | A | -1.0002 | |
| 9 | G | A | -0.8367 | |
| 10 | G | A | -0.0896 | |
| 11 | L | A | 0.9310 | |
| 12 | V | A | 0.0000 | |
| 13 | Q | A | -1.4345 | |
| 14 | A | A | -1.7682 | |
| 15 | G | A | -1.8720 | |
| 16 | G | A | -1.3966 | |
| 17 | S | A | -1.8319 | |
| 18 | L | A | -1.4463 | |
| 19 | R | A | -2.3122 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.9977 | |
| 22 | C | A | 0.0000 | |
| 23 | T | A | -1.2334 | |
| 24 | V | A | 0.0000 | |
| 25 | S | A | -1.3184 | |
| 26 | T | A | -1.2805 | |
| 27 | S | A | -1.2263 | |
| 28 | R | A | -2.2608 | |
| 29 | F | A | 0.0000 | |
| 30 | S | A | -1.7047 | |
| 31 | G | A | -1.7404 | |
| 32 | V | A | 0.0000 | |
| 33 | G | A | -2.0071 | |
| 34 | R | A | -2.5660 | |
| 35 | M | A | 0.0000 | |
| 36 | A | A | 0.0000 | |
| 37 | W | A | 0.0000 | |
| 38 | Y | A | -0.5876 | |
| 39 | R | A | 0.0000 | |
| 40 | Q | A | -1.9327 | |
| 41 | A | A | -1.8178 | |
| 42 | P | A | -1.3103 | |
| 43 | G | A | -1.8187 | |
| 44 | K | A | -2.9849 | |
| 45 | Q | A | -2.7837 | |
| 46 | R | A | -2.2543 | |
| 47 | E | A | -2.1629 | |
| 48 | K | A | -1.2387 | |
| 49 | V | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | E | A | 0.0000 | |
| 52 | I | A | 0.0000 | |
| 53 | T | A | -2.1085 | |
| 54 | R | A | -2.7593 | |
| 55 | A | A | -1.4600 | |
| 56 | G | A | -1.6385 | |
| 57 | S | A | -1.5628 | |
| 58 | R | A | -1.9870 | |
| 59 | T | A | -1.2708 | |
| 60 | Y | A | -1.3102 | |
| 61 | A | A | -1.5415 | |
| 62 | D | A | -2.4050 | |
| 63 | A | A | -1.5999 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.5815 | |
| 66 | G | A | -2.0039 | |
| 67 | R | A | -2.1516 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -1.2183 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.8795 | |
| 72 | R | A | -1.6193 | |
| 73 | D | A | -1.6831 | |
| 74 | N | A | -2.3193 | |
| 75 | A | A | -1.4835 | |
| 76 | K | A | -2.2757 | |
| 77 | N | A | -1.9506 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | -0.7644 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.6683 | |
| 83 | M | A | 0.0000 | |
| 84 | D | A | -2.6160 | |
| 85 | R | A | -2.9340 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.7354 | |
| 88 | P | A | -1.8670 | |
| 89 | E | A | -2.3112 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.9489 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.3751 | |
| 94 | Y | A | 0.0000 | |
| 95 | W | A | -0.6202 | |
| 96 | C | A | 0.0000 | |
| 97 | V | A | 0.0000 | |
| 98 | R | A | -2.1773 | |
| 99 | A | A | 0.0000 | |
| 100 | R | A | -2.6351 | |
| 101 | W | A | -1.6442 | |
| 102 | Q | A | -1.8517 | |
| 103 | S | A | -1.0426 | |
| 104 | G | A | -0.8453 | |
| 105 | T | A | -0.8740 | |
| 106 | P | A | -1.0310 | |
| 107 | R | A | -2.2307 | |
| 108 | T | A | 0.0000 | |
| 109 | P | A | -1.0164 | |
| 110 | G | A | -0.9754 | |
| 111 | T | A | -0.9664 | |
| 112 | Q | A | -1.0637 | |
| 113 | V | A | 0.0000 | |
| 114 | T | A | -0.3552 | |
| 115 | V | A | 0.0000 | |
| 116 | S | A | -0.8090 | |
| 117 | S | A | -1.0642 |