| Chain sequence(s) |
A: ATLEKLMKAFESLKSFQQQQQQQ
C: ATLEKLMKAFESLKSFQQQQQQQ B: ATLEKLMKAFESLKSFQQQQQQQ D: ATLEKLMKAFESLKSFQQQQQQQ input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | No |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:01)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:00:02)
[INFO] Main: Simulation completed successfully. (00:00:03)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 1 | A | A | -0.6282 | |
| 2 | T | A | -0.8852 | |
| 3 | L | A | -0.8860 | |
| 4 | E | A | -2.3007 | |
| 5 | K | A | -2.6591 | |
| 6 | L | A | 0.0000 | |
| 7 | M | A | -1.9620 | |
| 8 | K | A | -3.1515 | |
| 9 | A | A | 0.0000 | |
| 10 | F | A | -1.8136 | |
| 11 | E | A | -2.8304 | |
| 12 | S | A | -2.3169 | |
| 13 | L | A | 0.0000 | |
| 14 | K | A | -2.1794 | |
| 15 | S | A | -1.6497 | |
| 16 | F | A | 0.0000 | |
| 17 | Q | A | -1.5901 | |
| 18 | Q | A | -2.5897 | |
| 19 | Q | A | -2.3366 | |
| 20 | Q | A | -2.0575 | |
| 21 | Q | A | -2.7461 | |
| 22 | Q | A | -2.8844 | |
| 23 | Q | A | -2.5086 | |
| 1 | A | B | -0.6147 | |
| 2 | T | B | -0.8658 | |
| 3 | L | B | -0.8786 | |
| 4 | E | B | -2.2667 | |
| 5 | K | B | -2.5762 | |
| 6 | L | B | 0.0000 | |
| 7 | M | B | -1.9216 | |
| 8 | K | B | -3.0361 | |
| 9 | A | B | 0.0000 | |
| 10 | F | B | -1.7914 | |
| 11 | E | B | -2.8009 | |
| 12 | S | B | -2.2183 | |
| 13 | L | B | 0.0000 | |
| 14 | K | B | -2.0089 | |
| 15 | S | B | -1.6589 | |
| 16 | F | B | 0.0000 | |
| 17 | Q | B | -1.5894 | |
| 18 | Q | B | -2.5848 | |
| 19 | Q | B | -2.3234 | |
| 20 | Q | B | -2.0479 | |
| 21 | Q | B | -2.7444 | |
| 22 | Q | B | -2.8798 | |
| 23 | Q | B | -2.5040 | |
| 1 | A | C | -0.6197 | |
| 2 | T | C | -0.8786 | |
| 3 | L | C | -0.9036 | |
| 4 | E | C | -2.2856 | |
| 5 | K | C | -2.5989 | |
| 6 | L | C | 0.0000 | |
| 7 | M | C | -1.9428 | |
| 8 | K | C | -3.0492 | |
| 9 | A | C | 0.0000 | |
| 10 | F | C | -1.9801 | |
| 11 | E | C | -2.8198 | |
| 12 | S | C | -2.3160 | |
| 13 | L | C | 0.0000 | |
| 14 | K | C | -2.0194 | |
| 15 | S | C | -1.6515 | |
| 16 | F | C | 0.0000 | |
| 17 | Q | C | -1.5960 | |
| 18 | Q | C | -2.5925 | |
| 19 | Q | C | -2.3315 | |
| 20 | Q | C | -2.0549 | |
| 21 | Q | C | -2.7466 | |
| 22 | Q | C | -2.8818 | |
| 23 | Q | C | -2.5058 | |
| 1 | A | D | -0.6039 | |
| 2 | T | D | -0.8512 | |
| 3 | L | D | -0.8603 | |
| 4 | E | D | -2.2510 | |
| 5 | K | D | -2.5490 | |
| 6 | L | D | 0.0000 | |
| 7 | M | D | -1.9128 | |
| 8 | K | D | -3.1057 | |
| 9 | A | D | 0.0000 | |
| 10 | F | D | -1.7892 | |
| 11 | E | D | -2.8133 | |
| 12 | S | D | -2.3191 | |
| 13 | L | D | 0.0000 | |
| 14 | K | D | -2.1822 | |
| 15 | S | D | -1.6516 | |
| 16 | F | D | 0.0000 | |
| 17 | Q | D | -1.5905 | |
| 18 | Q | D | -2.5933 | |
| 19 | Q | D | -2.3392 | |
| 20 | Q | D | -2.0589 | |
| 21 | Q | D | -2.7484 | |
| 22 | Q | D | -2.8864 | |
| 23 | Q | D | -2.5089 |