Project name: NP_stalk55

Status: done

Started: 2026-06-10 09:55:45
Chain sequence(s) A: SSVLKTFERFTIQQELQEQSEDTPIPLETIRPTIRVFVINNNDPVVRSRLLFFNLRIIMSNTAREGHRAGALLSLLSLPSAAMSNHIKLAMHSPEASIDRVEITGFENNSFRVIPDARTSTMSRGEVLAFEALAEDIPDEFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKITNKVNSVIELTLNHQTPFVNLQNDVEDDIFDETEKFLDVCYSVLMQAWIVTCKCMTAPDQPPVSVAKRMAKYQQQGRINACRYVLQPEAQRLIQNAIRKSMVVRHFMTYELQLSQSRSLLANRYYAMVGDIGKYIEHSGMGGFFLTLKYGLGTRWPTLALAAFSGELQKLKALMLHYQSLGPMAKYMALLESPKLMDFVPSEYPLVYSYAMGIGTVLDTNMRNYAYGRSYLNPQYFQLGVETARKQQGAVDNRTAEDLGMTAADKADLTATISKLSLSQLPRGRQPISDPFAGANDRETGGQATDTPVYNFNSLNNRRYDNYDSDSEDRIDNDQDQAIRENRGEPGQPNNQTSENQQRLNLPVPQCTSGMSSEEFQHSMNQYIRAMHEQYRGSQDDDANDATDGNDISLELVGDFDSHHHHHH
B: SSVLKTFERFTIQQELQEQSEDTPIPLETIRPTIRVFVINNNDPVVRSRLLFFNLRIIMSNTAREGHRAGALLSLLSLPSAAMSNHIKLAMHSPEASIDRVEITGFENNSFRVIPDARTSTMSRGEVLAFEALAEDIPDEFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKITNKVNSVIELTLNHQTPFVNLQNDVEDDIFDETEKFLDVCYSVLMQAWIVTCKCMTAPDQPPVSVAKRMAKYQQQGRINACRYVLQPEAQRLIQNAIRKSMVVRHFMTYELQLSQSRSLLANRYYAMVGDIGKYIEHSGMGGFFLTLKYGLGTRWPTLALAAFSGELQKLKALMLHYQSLGPMAKYMALLESPKLMDFVPSEYPLVYSYAMGIGTVLDTNMRNYAYGRSYLNPQYFQLGVETARKQQGAVDNRTAEDLGMTAADKADLTATISKLSLSQLPRGRQPISDPFAGANDRETGGQATDTPVYNFNSLNNRRYDNYDSDSEDRIDNDQDQAIRENRGEPGQPNNQTSENQQRLNLPVPQCTSGMSSEEFQHSMNQYIRAMHEQYRGSQDDDANDATDGNDISLELVGDFDSHHHHHH
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
alphaCutter usage A: SSVLKTFERFTIQQELQEQSEDTPIPLETIRPTIRVFVINNNDPVVRSRLLFFNLRIIMSNTAREGHRAGALLSLLSLPSAAMSNHIKLAMHSPEASIDRVEITGFENNSFRVIPDARTSTMSRGEVLAFEALAEDIPDEFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKITNKVNSVIELTLNHQTPFVNLQNDVEDDIFDETEKFLDVCYSVLMQAWIVTCKCMTAPDQPPVSVAKRMAKYQQQGRINACRYVLQPEAQRLIQNAIRKSMVVRHFMTYELQLSQSRSLLANRYYAMVGDIGKYIEHSGMGGFFLTLKYGLGTRWPTLALAAFSGELQKLKALMLHYQSLGPMAKYMALLESPKLMDFVPSEYPLVYSYAMGIGTVLDTNMRNYAYGRSYLNPQYFQLGVETARKQQGAVDNRTAEDLGMTAADKADLTATISKLSLSQLPRGRQPISDPFAGANDRETGGQATDTPVYNF

NSLNNRRYDNYDSDSEDRIDNDQDQAIRENRGEPGQPNNQTSENQQR

LNLPVPQCTSGMSSEEFQHSMNQYIRAMHEQYRGSQDDDA

NDATDGNDISLELVGDFDSHHHHHH


B: SSVLKTFERFTIQQELQEQSEDTPIPLETIRPTIRVFVINNNDPVVRSRLLFFNLRIIMSNTAREGHRAGALLSLLSLPSAAMSNHIKLAMHSPEASIDRVEITGFENNSFRVIPDARTSTMSRGEVLAFEALAEDIPDEFGAIAGFIEGGWTGMVDGWYGYHHQNEQGSGYAADLKSTQNAIDKITNKVNSVIELTLNHQTPFVNLQNDVEDDIFDETEKFLDVCYSVLMQAWIVTCKCMTAPDQPPVSVAKRMAKYQQQGRINACRYVLQPEAQRLIQNAIRKSMVVRHFMTYELQLSQSRSLLANRYYAMVGDIGKYIEHSGMGGFFLTLKYGLGTRWPTLALAAFSGELQKLKALMLHYQSLGPMAKYMALLESPKLMDFVPSEYPLVYSYAMGIGTVLDTNMRNYAYGRSYLNPQYFQLGVETARKQQGAVDNRTAEDLGMTAADKADLTATISKLSLSQLPRGRQPISDPFAGANDR

ETGGQATDTPVYNFNSLNNRRYDNYDSDSEDRIDNDQDQAIRENRGEPGQPNNQTSENQQRLNLPVPQCTSGMSSEEFQHSMNQYIRAMHEQYRGSQDDDANDATDGNDISLELVGDFDSHHHHHH


(Red indicates removed residues)
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       PDB:      Running AlphaCutter                                                         (00:00:01)
[INFO]       PDB-Info: The input structure is globular. Max score is recommended for pH analysis.  (00:00:17)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:17)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:22:26)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/9bdadb58fe24a4a/tmp/folded.pdb                (00:22:26)
[INFO]       Main:     Simulation completed successfully.                                          (00:28:13)
Show buried residues

Minimal score value
-4.1971
Maximal score value
1.9841
Average score
-0.7569
Total score value
-772.0102

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
1 S A -0.4248
2 S A -0.4814
3 V A -0.2987
4 L A -0.5876
5 K A -1.7596
6 T A 0.0000
7 F A 0.0000
8 E A -2.0504
9 R A -2.5539
10 F A 0.0000
11 T A -1.4817
12 I A -1.2149
13 Q A -1.8259
14 Q A -1.5548
15 E A -1.1189
16 L A -0.8707
17 Q A -2.3507
18 E A -2.4587
19 Q A -2.7959
20 S A -2.7080
21 E A -3.1573
22 D A -2.5926
23 T A -1.7376
24 P A 0.0943
25 I A 1.0640
26 P A 0.5146
27 L A -0.2894
28 E A -1.7351
29 T A 0.0000
30 I A 0.0000
31 R A -2.4675
32 P A 0.0000
33 T A -1.0391
34 I A 0.0000
35 R A -1.1123
36 V A 0.0000
37 F A 0.0000
38 V A 0.0000
39 I A 0.0000
40 N A -2.3912
41 N A -2.7460
42 N A -2.4284
43 D A -2.1651
44 P A -1.4668
45 V A 0.0167
46 V A -0.3660
47 R A 0.0000
48 S A 0.0000
49 R A -0.0982
50 L A 0.0000
51 L A 0.0000
52 F A 0.0000
53 F A 0.0000
54 N A 0.0000
55 L A 0.0000
56 R A -0.9156
57 I A 0.0000
58 I A 0.0000
59 M A 0.0000
60 S A 0.0000
61 N A -2.0183
62 T A -1.3842
63 A A 0.0000
64 R A -2.1424
65 E A -2.3225
66 G A -1.5937
67 H A -1.2524
68 R A -1.3214
69 A A 0.0000
70 G A 0.0000
71 A A 0.0000
72 L A 0.0000
73 L A 0.0000
74 S A 0.0000
75 L A 0.0000
76 L A 0.0000
77 S A 0.0000
78 L A 0.0000
79 P A -0.0685
80 S A -0.3720
81 A A -0.8411
82 A A -1.0471
83 M A 0.0000
84 S A -1.4762
85 N A -1.7213
86 H A -1.0801
87 I A 0.0000
88 K A -1.8159
89 L A -0.7293
90 A A 0.0000
91 M A -0.6272
92 H A -0.8174
93 S A 0.0000
94 P A -1.0448
95 E A -1.2322
96 A A 0.0000
97 S A -1.1300
98 I A 0.0000
99 D A -1.5333
100 R A -1.8734
101 V A 0.0000
102 E A -1.2198
103 I A 0.0000
104 T A -0.5574
105 G A 0.0000
106 F A -0.7511
107 E A -1.9027
108 N A -2.4121
109 N A -2.4807
110 S A -1.8093
111 F A 0.0000
112 R A -1.2145
113 V A 0.0000
114 I A 0.1177
115 P A -0.4194
116 D A -0.8870
117 A A -0.9320
118 R A -1.9847
119 T A -1.2545
120 S A -0.8135
121 T A -0.8680
122 M A -0.7249
123 S A -1.3389
124 R A -2.1286
125 G A -1.5612
126 E A -1.3294
127 V A 0.0000
128 L A -0.4812
129 A A -0.6051
130 F A 0.0000
131 E A -0.8134
132 A A -0.7517
133 L A -1.0280
134 A A 0.0000
135 E A -2.3952
136 D A -2.0985
137 I A 0.0000
138 P A -1.8179
139 D A -2.1793
140 E A -1.7899
141 F A 1.0050
142 G A 0.0954
143 A A 0.4675
144 I A 1.4533
145 A A 0.4930
146 G A -0.4781
147 F A 0.3248
148 I A 0.8931
149 E A -1.1808
150 G A -0.8122
151 G A -0.1757
152 W A 0.2570
153 T A -0.4074
154 G A -0.3521
155 M A 0.0757
156 V A 0.0769
157 D A -0.9641
158 G A -0.3703
159 W A 0.5424
160 Y A 0.8508
161 G A 0.1280
162 Y A 0.2632
163 H A -1.1251
164 H A -2.3900
165 Q A -3.0955
166 N A -3.6950
167 E A -3.5765
168 Q A -2.9828
169 G A -1.9304
170 S A -1.1684
171 G A -0.8606
172 Y A 0.4261
173 A A 0.2169
174 A A -0.5064
175 D A -1.4949
176 L A -0.5288
177 K A -2.1230
178 S A -1.5313
179 T A -1.1133
180 Q A -1.8048
181 N A -2.1299
182 A A -1.0090
183 I A -0.4950
184 D A -2.2766
185 K A -2.7532
186 I A -1.3012
187 T A -1.6894
188 N A -2.4283
189 K A -2.0505
190 V A -0.5845
191 N A -1.7174
192 S A -1.1317
193 V A 0.0000
194 I A 0.7297
195 E A -1.4132
196 L A -0.5341
197 T A -0.8894
198 L A 0.0000
199 N A -2.6277
200 H A -2.6194
201 Q A -2.6542
202 T A 0.0000
203 P A 0.0000
204 F A 0.0000
205 V A -0.2770
206 N A -1.4129
207 L A -0.6591
208 Q A -1.8701
209 N A -2.7120
210 D A -2.7717
211 V A 0.0000
212 E A -1.5613
213 D A -2.3474
214 D A -0.9137
215 I A 0.6573
216 F A 0.0000
217 D A -2.1586
218 E A -2.7664
219 T A -2.4703
220 E A -2.9382
221 K A -2.2487
222 F A 0.0000
223 L A -1.0402
224 D A -1.1807
225 V A 0.0000
226 C A 0.0000
227 Y A 0.0000
228 S A 0.0000
229 V A 0.0000
230 L A 0.0000
231 M A 0.0000
232 Q A 0.0000
233 A A 0.0000
234 W A 0.0000
235 I A 0.0000
236 V A 0.0000
237 T A 0.0000
238 C A 0.0484
239 K A 0.0000
240 C A 0.0000
241 M A -0.1136
242 T A -0.5266
243 A A -1.2059
244 P A -1.7950
245 D A -2.5161
246 Q A -2.0346
247 P A -0.8877
248 P A -0.4085
249 V A 0.8639
250 S A -0.1235
251 V A 0.0000
252 A A -0.5725
253 K A -1.7606
254 R A -1.5392
255 M A 0.0000
256 A A -1.8012
257 K A -2.4419
258 Y A 0.0000
259 Q A -2.0281
260 Q A -2.5230
261 Q A -2.4441
262 G A -1.8552
263 R A -1.5995
264 I A 0.0000
265 N A -0.7553
266 A A -0.1218
267 C A 0.6152
268 R A -0.3429
269 Y A 0.0000
270 V A 0.2495
271 L A 0.0000
272 Q A 0.0000
273 P A -0.7285
274 E A 0.0000
275 A A 0.0000
276 Q A -0.5891
277 R A -0.8276
278 L A -0.4370
279 I A 0.0000
280 Q A -0.8199
281 N A -1.1996
282 A A 0.0000
283 I A 0.0000
284 R A -1.2264
285 K A -1.8168
286 S A 0.0000
287 M A 0.0000
288 V A 0.0000
289 V A 0.0000
290 R A 0.0000
291 H A 0.0000
292 F A 0.0000
293 M A 0.0000
294 T A 0.0000
295 Y A 0.1565
296 E A 0.0000
297 L A 0.0000
298 Q A -0.5124
299 L A -0.0955
300 S A -0.6475
301 Q A -0.9656
302 S A -0.8929
303 R A -1.4970
304 S A -0.1109
305 L A 1.5391
306 L A 1.5714
307 A A 0.0250
308 N A -1.2556
309 R A -1.5739
310 Y A 0.0000
311 Y A -0.5282
312 A A -0.4393
313 M A 0.0000
314 V A 0.0000
315 G A -0.8570
316 D A -0.9393
317 I A 0.0000
318 G A 0.0000
319 K A -1.7511
320 Y A -0.5342
321 I A 0.0000
322 E A 0.0000
323 H A -0.8068
324 S A -0.6446
325 G A -0.4829
326 M A 0.0000
327 G A -0.1608
328 G A -0.0584
329 F A 0.0000
330 F A 0.0866
331 L A -0.1190
332 T A 0.0000
333 L A -0.4125
334 K A -1.5613
335 Y A 0.0000
336 G A 0.0000
337 L A -0.6643
338 G A -1.1753
339 T A -1.3980
340 R A -2.3238
341 W A -1.0470
342 P A -1.2395
343 T A 0.0000
344 L A 0.0000
345 A A 0.0000
346 L A 0.0000
347 A A 0.0000
348 A A 0.0000
349 F A 0.0000
350 S A -0.5211
351 G A -0.8540
352 E A -0.8528
353 L A -0.3941
354 Q A -0.8009
355 K A -1.0678
356 L A 0.0000
357 K A -0.8980
358 A A 0.0000
359 L A 0.0000
360 M A 0.0372
361 L A 0.2262
362 H A 0.0000
363 Y A -0.2787
364 Q A -0.8290
365 S A -0.6447
366 L A -0.6694
367 G A -0.5640
368 P A -0.6549
369 M A -0.3738
370 A A 0.0000
371 K A -1.0423
372 Y A 0.0000
373 M A 0.0000
374 A A -0.3657
375 L A 0.0000
376 L A 0.0000
377 E A -0.5433
378 S A 0.0000
379 P A -0.3941
380 K A 0.0000
381 L A 0.0459
382 M A -0.1805
383 D A -0.6651
384 F A 0.0000
385 V A 0.0562
386 P A 0.0000
387 S A -0.7585
388 E A -1.1716
389 Y A 0.0000
390 P A 0.0000
391 L A 0.0000
392 V A 0.0000
393 Y A 0.0000
394 S A 0.0000
395 Y A 0.0000
396 A A 0.0000
397 M A 0.0000
398 G A 0.0000
399 I A 0.0000
400 G A 0.0000
401 T A -0.2358
402 V A 0.3844
403 L A 0.6615
404 D A -0.3587
405 T A -1.1796
406 N A -2.0872
407 M A 0.0000
408 R A -2.6505
409 N A -2.3514
410 Y A -1.2515
411 A A -0.7078
412 Y A -0.7128
413 G A -0.6877
414 R A -1.2319
415 S A -0.8874
416 Y A -0.7471
417 L A -0.4907
418 N A -0.5548
419 P A -0.2257
420 Q A -0.7789
421 Y A 0.0000
422 F A -0.1575
423 Q A -0.5150
424 L A 0.0000
425 G A 0.0000
426 V A 0.0264
427 E A -0.7865
428 T A 0.0000
429 A A 0.0000
430 R A -1.7495
431 K A -1.6998
432 Q A -1.4976
433 Q A -1.2404
434 G A -0.9176
435 A A -1.0135
436 V A -1.6486
437 D A -3.4626
438 N A -3.7657
439 R A -4.0535
440 T A -2.8407
441 A A 0.0000
442 E A -3.6783
443 D A -2.9678
444 L A -0.7216
445 G A -1.3509
446 M A -1.1919
447 T A -0.7502
448 A A -0.5656
449 A A -0.8772
450 D A -1.5371
451 K A -1.4150
452 A A -0.9996
453 D A -1.8647
454 L A -0.6500
455 T A -0.6512
456 A A -0.8165
457 T A -0.3478
458 I A 0.0622
459 S A -0.4797
460 K A -0.7136
461 L A 0.7400
462 S A 0.3867
463 L A 1.3028
464 S A 0.3786
465 Q A -0.3076
466 L A 0.5937
467 P A -1.3041
468 R A -2.6004
469 G A -2.5218
470 R A -2.7171
471 Q A -2.0883
472 P A -0.7373
473 I A 0.6993
474 S A -0.0911
475 D A -0.4515
476 P A 0.0756
477 F A 0.8144
478 A A -0.2870
479 G A -1.1877
480 A A -1.2150
481 N A -2.8979
482 D A -3.9670
483 R A -4.1181
484 E A -3.7064
485 T A -2.1109
486 G A -1.6621
487 G A -1.4601
488 Q A -1.5084
489 A A -1.1223
490 T A -1.3121
491 D A -1.7242
492 T A -0.4484
493 P A 0.2098
494 V A 1.9403
495 Y A 1.9697
496 N A 0.7102
497 F A 1.9245
545 L A 1.2411
546 N A 0.1548
547 L A 1.3479
548 P A 0.8093
549 V A 1.7172
550 P A 0.5656
551 Q A -0.3474
552 C A 0.0810
553 T A -0.1098
554 S A -0.3272
555 G A -0.4517
556 M A -0.7063
557 S A -1.3597
558 S A -1.7778
559 E A -3.1157
560 E A -2.8552
561 F A -1.8133
562 Q A -2.6535
563 H A -2.7149
564 S A -1.5786
565 M A -0.9986
566 N A -1.6858
567 Q A -1.8937
568 Y A -0.3349
569 I A -0.4881
570 R A -2.4286
571 A A -1.6691
572 M A -1.1965
573 H A -2.4198
574 E A -3.1966
575 Q A -2.4117
576 Y A -1.5851
577 R A -3.2009
578 G A -3.1521
579 S A -2.8827
580 Q A -3.5897
581 D A -4.1971
582 D A -4.0652
583 D A -3.4735
584 A A -2.0208
1 S B 0.0219
2 S B 0.6155
3 V B 1.9841
4 L B 1.5230
5 K B -0.3787
6 T B 0.4801
7 F B 1.0690
8 E B -0.4906
9 R B -1.2162
10 F B 0.5734
11 T B 0.0000
12 I B -0.7630
13 Q B -2.0368
14 Q B -2.2456
15 E B -1.9138
16 L B -1.6009
17 Q B -3.1231
18 E B -3.8346
19 Q B -3.4344
20 S B -3.0916
21 E B -3.2231
22 D B -2.8336
23 T B -1.8317
24 P B 0.0938
25 I B 1.3823
26 P B 0.8990
27 L B 1.2402
28 E B -0.8214
29 T B -0.2821
30 I B 0.6028
31 R B -1.5319
32 P B -0.9357
33 T B -1.0244
34 I B 0.0000
35 R B -1.2918
36 V B 0.0000
37 F B 0.0000
38 V B 0.0000
39 I B 0.0000
40 N B -2.0087
41 N B -1.9522
42 N B -2.1614
43 D B -1.6981
44 P B -0.8718
45 V B 0.2334
46 V B -0.2501
47 R B 0.0000
48 S B 0.0000
49 R B -0.0988
50 L B 0.0000
51 L B 0.0000
52 F B 0.0000
53 F B 0.0000
54 N B 0.0000
55 L B 0.0000
56 R B 0.0000
57 I B 0.0000
58 I B 0.0000
59 M B 0.0000
60 S B 0.0000
61 N B -2.0185
62 T B -1.4483
63 A B 0.0000
64 R B -3.1693
65 E B -3.4058
66 G B -2.2721
67 H B -1.8466
68 R B -1.8897
69 A B 0.0000
70 G B 0.0000
71 A B 0.0000
72 L B 0.0000
73 L B 0.0000
74 S B 0.0000
75 L B 0.0000
76 L B 0.0000
77 S B 0.0000
78 L B 0.0000
79 P B 0.0000
80 S B 0.0000
81 A B -1.4552
82 A B -1.0971
83 M B 0.0000
84 S B -1.1201
85 N B -1.1145
86 H B 0.0000
87 I B 0.0000
88 K B -1.3540
89 L B -0.5845
90 A B 0.0000
91 M B -0.6722
92 H B -1.0721
93 S B 0.0000
94 P B -1.2314
95 E B -1.3556
96 A B 0.0000
97 S B -1.1152
98 I B 0.0000
99 D B -1.8999
100 R B -1.8300
101 V B 0.0000
102 E B -1.2215
103 I B 0.0000
104 T B -0.3770
105 G B 0.0000
106 F B -0.7510
107 E B -1.7971
108 N B -2.3485
109 N B -2.4285
110 S B -1.7874
111 F B 0.0000
112 R B -1.1464
113 V B 0.0000
114 I B 0.0242
115 P B -0.4658
116 D B -0.9110
117 A B -0.9614
118 R B -1.9731
119 T B -1.1956
120 S B -0.7841
121 T B -0.9007
122 M B -0.7514
123 S B -1.3504
124 R B -2.1488
125 G B -1.5880
126 E B -1.3832
127 V B 0.0000
128 L B -0.5412
129 A B -0.6714
130 F B 0.0000
131 E B -0.9804
132 A B -0.8160
133 L B -1.1108
134 A B 0.0000
135 E B -2.3436
136 D B -1.9868
137 I B 0.0000
138 P B 0.0000
139 D B -1.7709
140 E B -1.4373
141 F B 1.1436
142 G B 0.3950
143 A B 0.2563
144 I B 1.3328
145 A B 0.3363
146 G B -0.3585
147 F B 0.2761
148 I B 0.5101
149 E B -1.3272
150 G B -1.0416
151 G B -0.5626
152 W B 0.0394
153 T B -0.5815
154 G B -0.8914
155 M B -0.0848
156 V B -0.1509
157 D B -1.1422
158 G B -0.5007
159 W B 0.4781
160 Y B 0.7318
161 G B 0.0530
162 Y B 0.1620
163 H B -1.2004
164 H B -2.3792
165 Q B -3.2469
166 N B -3.6720
167 E B -3.5719
168 Q B -2.9564
169 G B -1.9223
170 S B -1.0469
171 G B -0.6312
172 Y B 0.6236
173 A B 0.2598
174 A B -0.4137
175 D B -1.5100
176 L B -0.5232
177 K B -2.0703
178 S B -1.4760
179 T B -1.0528
180 Q B -1.7612
181 N B -2.0640
182 A B 0.0000
183 I B -0.3710
184 D B -2.1481
185 K B -2.5974
186 I B -1.0689
187 T B -1.2916
188 N B -2.4946
189 K B -1.7701
190 V B -0.5411
191 N B -1.6632
192 S B -1.4016
193 V B 0.0000
194 I B 0.1968
195 E B -1.7192
196 L B -0.7390
197 T B 0.0000
198 L B 0.0000
199 N B -1.9705
200 H B -2.4961
201 Q B -2.8406
202 T B 0.0000
203 P B 0.0000
204 F B 0.0000
205 V B 0.6550
206 N B -1.0507
207 L B -0.6934
208 Q B -1.7869
209 N B -2.6008
210 D B -2.5384
211 V B 0.0000
212 E B 0.0000
213 D B -2.2053
214 D B -0.8596
215 I B 0.8855
216 F B 0.0000
217 D B -1.4191
218 E B -1.4400
219 T B -1.5709
220 E B -1.7855
221 K B -1.2482
222 F B 0.0000
223 L B 0.0000
224 D B -0.9136
225 V B 0.0000
226 C B 0.0000
227 Y B 0.0000
228 S B 0.0000
229 V B 0.0000
230 L B 0.0000
231 M B 0.0000
232 Q B 0.0000
233 A B 0.0000
234 W B 0.0000
235 I B 0.0000
236 V B 0.0000
237 T B 0.0000
238 C B -0.0086
239 K B 0.0000
240 C B -0.2410
241 M B -0.1713
242 T B -0.3995
243 A B -0.8405
244 P B -1.4781
245 D B -2.3997
246 Q B -1.7452
247 P B -0.7174
248 P B -0.3323
249 V B 0.9260
250 S B -0.0343
251 V B 0.0000
252 A B -0.4333
253 K B -1.5407
254 R B -1.2277
255 M B -0.8802
256 A B -1.4196
257 K B -1.7539
258 Y B 0.0000
259 Q B -1.5860
260 Q B -2.0269
261 Q B -1.9025
262 G B -1.5836
263 R B -1.2332
264 I B 0.0000
265 N B -0.7241
266 A B -0.0714
267 C B 0.4987
268 R B -0.4495
269 Y B 0.0000
270 V B 0.4271
271 L B 0.0000
272 Q B 0.0000
273 P B -0.5611
274 E B 0.0000
275 A B 0.0000
276 Q B -0.5478
277 R B -0.8563
278 L B -0.4234
279 I B 0.0000
280 Q B 0.0000
281 N B -1.3328
282 A B 0.0000
283 I B 0.0000
284 R B -1.3158
285 K B -2.3747
286 S B 0.0000
287 M B -0.8672
288 V B 0.0000
289 V B 0.0000
290 R B -0.6199
291 H B -0.3029
292 F B 0.0000
293 M B 0.0000
294 T B 0.0000
295 Y B 0.2118
296 E B 0.0000
297 L B 0.0000
298 Q B -0.1597
299 L B 0.0000
300 S B 0.0000
301 Q B -0.8135
302 S B -1.2687
303 R B -2.3321
304 S B -0.8595
305 L B 0.0000
306 L B -0.3300
307 A B -0.5002
308 N B -0.8663
309 R B -0.6653
310 Y B 0.0000
311 Y B 0.0000
312 A B 0.0000
313 M B 0.0000
314 V B 0.0000
315 G B 0.0000
316 D B 0.0000
317 I B 0.0000
318 G B 0.0000
319 K B -1.7264
320 Y B -0.6062
321 I B 0.0000
322 E B -1.0098
323 H B -0.8061
324 S B -0.6658
325 G B -0.4193
326 M B 0.0000
327 G B -0.2434
328 G B 0.0000
329 F B 0.0000
330 F B -0.1316
331 L B -0.1880
332 T B 0.0000
333 L B 0.0000
334 K B -1.2406
335 Y B 0.0000
336 G B 0.0000
337 L B 0.0000
338 G B 0.0000
339 T B 0.0000
340 R B -0.6388
341 W B 0.0000
342 P B -0.2704
343 T B 0.0462
344 L B 0.0000
345 A B 0.2527
346 L B 0.6429
347 A B 0.2893
348 A B 0.2199
349 F B 0.0000
350 S B -0.2731
351 G B -0.5759
352 E B -0.7244
353 L B -0.3184
354 Q B -0.7318
355 K B -0.9446
356 L B 0.0000
357 K B -0.2000
358 A B 0.0000
359 L B 0.0000
360 M B 0.0000
361 L B 0.0199
362 H B 0.0000
363 Y B 0.0000
364 Q B -0.4331
365 S B -0.6534
366 L B -0.4429
367 G B -0.2880
368 P B -0.5578
369 M B 0.0196
370 A B 0.0000
371 K B -0.7162
372 Y B 0.0000
373 M B 0.0000
374 A B -0.7755
375 L B 0.0000
376 L B -0.7037
377 E B -1.7019
378 S B -1.0789
379 P B -0.8340
380 K B -1.0847
381 L B -0.3779
382 M B 0.1303
383 D B -0.7414
384 F B 0.0000
385 V B 0.0524
386 P B 0.0000
387 S B -0.5014
388 E B -1.0171
389 Y B 0.0000
390 P B -0.3012
391 L B -0.0906
392 V B 0.0000
393 Y B 0.0000
394 S B 0.0000
395 Y B 0.0000
396 A B 0.0000
397 M B 0.0000
398 G B 0.0000
399 I B 0.0000
400 G B 0.0000
401 T B -0.5943
402 V B -0.5096
403 L B 0.0000
404 D B -0.7478
405 T B -1.2888
406 N B -1.9385
407 M B 0.0000
408 R B -2.6901
409 N B -2.3013
410 Y B -1.1938
411 A B -0.7106
412 Y B -0.7403
413 G B -0.7030
414 R B -1.2791
415 S B -0.7603
416 Y B -0.5009
417 L B 0.0000
418 N B -0.7855
419 P B -0.8049
420 Q B -1.2983
421 Y B -0.5805
422 F B -0.5248
423 Q B -1.1571
424 L B -0.7984
425 G B 0.0000
426 V B -1.2872
427 E B -2.3612
428 T B 0.0000
429 A B 0.0000
430 R B -3.1227
431 K B -3.1041
432 Q B -1.8563
433 Q B -1.5057
434 G B -0.9785
435 A B -0.8837
436 V B -0.7576
437 D B -2.0329
438 N B -3.1222
439 R B -3.6671
440 T B -2.6618
441 A B 0.0000
442 E B -3.8348
443 D B -3.5905
444 L B -2.1880
445 G B -2.4601
446 M B -1.4528
447 T B -0.8103
448 A B -0.5656
449 A B -0.8334
450 D B -1.4192
451 K B -1.4315
452 A B -1.2080
453 D B -2.0998
454 L B 0.0000
455 T B -0.9854
456 A B -1.1272
457 T B 0.0000
458 I B -0.6692
459 S B -0.9038
460 K B -1.1815
461 L B 0.0000
462 S B -0.1258
463 L B 1.1623
464 S B 0.3586
465 Q B 0.1835
466 L B 0.8983
467 P B -0.7465
468 R B -2.4060
469 G B -2.4817
470 R B -2.7148
471 Q B -2.0457
472 P B -0.7772
473 I B 0.6443
474 S B -0.2728
475 D B -0.8909
476 P B -0.2461
477 F B 0.3957
478 A B -0.6976
479 G B -1.2557
480 A B -1.2499
481 N B -2.5913
482 D B -3.3827
483 R B -3.1341
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is globular. Max score is recommended for pH analysis.

pH
Average A4D Score
Max A4D Score
4.0 -0.4163 5.0021 View CSV PDB
4.5 -0.4792 4.8771 View CSV PDB
5.0 -0.5565 4.7074 View CSV PDB
5.5 -0.636 4.5198 View CSV PDB
6.0 -0.7053 4.3504 View CSV PDB
6.5 -0.7562 4.3504 View CSV PDB
7.0 -0.7878 4.3504 View CSV PDB
7.5 -0.8052 4.3503 View CSV PDB
8.0 -0.8131 4.3502 View CSV PDB
8.5 -0.8126 4.3497 View CSV PDB
9.0 -0.8021 4.3482 View CSV PDB