Project name: a023ed44d4a0752

Status: done

Started: 2025-04-28 18:39:16
Chain sequence(s) A: MLPGLALLLLAAWTARALEVPTDGNAGLLAEPQIAMFCGRLNMHMNVQNGKWDSDPSGTKTCIDTKEGILQYCQEVYPELQITNVVEANQPVTIQNWCKRGRKQCKTHPHFVIPYRCLVGEFVSDALLVPDKCKFLHQERMDVCETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPLAEESDNVDSADAEEDDSDVWWGGADTDYADGSEDKVVEVAEEEEVAEVEEEEADDDEDDEDGDEVEEEAEEPYEEATERTTSIATTTTTTTESVEEVVREVCSEQAETGPCRAMISRWYFDVTEGKCAPFFYGGCGGNRNNFDTEEYCMAVCGSAMSQSLLKTTQEPLARDPVKLPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLNDRRRLALENYITALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQSLSLLYNVPAVAEEIQDEVDELLQKEQNYSDDVLANMISEPRISYGNDALMPSLTETKTTVELLPVNGEFSLDDLQPWHSFGADSVPANTENEVEPVDARPAADRGLTTRPGSGLTNIKTEEISEVKMDAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIATVIVITLVMLKKKQYTSIHHGVVEVDAAVTPEERHLSKMQQNGYENPTYKFFEQMQN
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
pH calculations Yes
alphaCutter usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       PDB-Info: The input structure is partially or entirely disordered. Average score is   
                       recommended for pH analysis.                                                (00:00:03)
[INFO]       FoldX:    Starting FoldX energy minimization                                          (00:00:03)
[INFO]       Analysis: Starting Aggrescan4D on folded.pdb                                          (00:11:48)
[INFO]       agg3D:    Running pKa-ANI on                                                          
                       /STORAGE/DATA/lcbio/aggreskan/a023ed44d4a0752/tmp/folded.pdb                (00:11:48)
[INFO]       Main:     Simulation completed successfully.                                          (00:15:24)
Show buried residues

Minimal score value
-4.5742
Maximal score value
5.2453
Average score
-0.9609
Total score value
-739.8717

The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan4D score mutation
1 M A 1.7407
2 L A 1.8412
3 P A 0.8186
4 G A 0.7249
5 L A 1.7975
6 A A 1.9010
7 L A 2.9580
8 L A 3.6225
9 L A 3.5134
10 L A 2.7388
11 A A 1.3774
12 A A 0.9424
13 W A 1.2043
14 T A 0.1850
15 A A -0.6479
16 R A -1.7139
17 A A -0.2714
18 L A 0.7710
19 E A -0.4941
20 V A 0.9927
21 P A -0.2130
22 T A -1.1014
23 D A -2.2475
24 G A -2.0696
25 N A -1.9682
26 A A -0.9743
27 G A -0.4051
28 L A 0.1130
29 L A 0.9383
30 A A -0.2512
31 E A -0.6618
32 P A 0.0000
33 Q A -0.4533
34 I A 0.0000
35 A A 0.0000
36 M A 0.6117
37 F A 1.3714
38 C A 0.7191
39 G A -0.4121
40 R A -0.8070
41 L A 0.0000
42 N A 0.0000
43 M A 0.0000
44 H A -0.6443
45 M A -1.2202
46 N A -1.3540
47 V A 0.0000
48 Q A -1.3827
49 N A -1.4679
50 G A -1.3694
51 K A -2.3305
52 W A -1.5814
53 D A -1.5476
54 S A -1.1026
55 D A 0.0000
56 P A -0.7764
57 S A -0.7040
58 G A -1.6349
59 T A -1.2580
60 K A -0.9733
61 T A -0.5687
62 C A 0.2153
63 I A -0.6541
64 D A -1.9271
65 T A -1.7907
66 K A -1.9616
67 E A -2.5300
68 G A -1.9053
69 I A 0.0000
70 L A -1.4302
71 Q A -2.2755
72 Y A 0.0000
73 C A 0.0000
74 Q A -2.1638
75 E A -2.0294
76 V A -1.1427
77 Y A 0.0000
78 P A -1.8016
79 E A -2.3193
80 L A -1.5488
81 Q A -1.8695
82 I A 0.0000
83 T A -0.6567
84 N A 0.0000
85 V A 0.0000
86 V A 0.0000
87 E A -0.3876
88 A A -0.5616
89 N A -0.9052
90 Q A -0.8131
91 P A 0.3116
92 V A 0.5708
93 T A 0.5947
94 I A 0.0000
95 Q A -2.0861
96 N A -2.8769
97 W A 0.0000
98 C A 0.0000
99 K A -3.2780
100 R A -3.4922
101 G A -3.0438
102 R A -4.1848
103 K A -3.8126
104 Q A -3.3162
105 C A -3.0538
106 K A -3.0063
107 T A -2.0053
108 H A -1.7873
109 P A -1.3154
110 H A 0.1128
111 F A 1.7412
112 V A 0.0000
113 I A 1.1712
114 P A 0.0000
115 Y A -0.1270
116 R A -0.3953
117 C A 0.0000
118 L A 0.0448
119 V A -0.4084
120 G A -0.9854
121 E A -1.2786
122 F A 0.5167
123 V A 1.5284
124 S A 0.7303
125 D A -0.0382
126 A A 0.4565
127 L A 0.8347
128 L A 1.7479
129 V A 0.7408
130 P A -0.6917
131 D A -2.4578
132 K A -2.7554
133 C A -1.6409
134 K A -1.7759
135 F A -0.0207
136 L A -0.5380
137 H A -1.3300
138 Q A -1.9599
139 E A -2.4480
140 R A -2.3939
141 M A -0.7319
142 D A -1.7587
143 V A -0.9646
144 C A -0.6676
145 E A -0.6795
146 T A -0.2403
147 H A 0.0000
148 L A 0.9776
149 H A -0.0190
150 W A 0.0000
151 H A -0.4602
152 T A -0.7028
153 V A -0.9531
154 A A 0.0000
155 K A -2.9096
156 E A -3.3345
157 T A -2.5609
158 C A 0.0000
159 S A -2.8742
160 E A -3.7057
161 K A -2.9257
162 S A -1.8061
163 T A -1.9394
164 N A -2.1432
165 L A -1.6760
166 H A -1.1017
167 D A -0.8692
168 Y A 0.0000
169 G A 0.0000
170 M A 0.0000
171 L A -0.1541
172 L A 0.6636
173 P A 0.3526
174 C A 0.2272
175 G A -0.3729
176 I A -0.3445
177 D A 0.0000
178 K A -0.4924
179 F A 0.0000
180 R A -1.2023
181 G A 0.0000
182 V A 0.0000
183 E A -0.9078
184 F A 0.0000
185 V A 0.0000
186 C A 0.0000
187 C A -1.3724
188 P A -1.3477
189 L A -0.4265
190 A A -1.2247
191 E A -2.7754
192 E A -3.2533
193 S A -2.7822
194 D A -2.9961
195 N A -1.9199
196 V A -0.2448
197 D A -1.4828
198 S A -1.2346
199 A A -1.3353
200 D A -2.6489
201 A A -2.0719
202 E A -3.6475
203 E A -4.2297
204 D A -4.2007
205 D A -3.6604
206 S A -1.8319
207 D A -1.6513
208 V A 1.0520
209 W A 0.8827
210 W A 0.7609
211 G A -0.2667
212 G A -0.6434
213 A A -1.1235
214 D A -2.2259
215 T A -1.4526
216 D A -2.1104
217 Y A -0.3518
218 A A -1.0761
219 D A -2.4217
220 G A -2.2923
221 S A -2.5819
222 E A -3.5871
223 D A -2.9164
224 K A -2.1442
225 V A 0.7621
226 V A 1.5173
227 E A 0.1695
228 V A 1.1129
229 A A -0.9399
230 E A -2.6335
231 E A -3.9546
232 E A -3.5856
233 E A -2.2030
234 V A 0.1611
235 A A -0.1294
236 E A -0.9662
237 V A -0.4356
238 E A -2.5043
239 E A -3.6427
240 E A -4.0596
241 E A -3.3897
242 A A -2.4459
243 D A -3.3787
244 D A -3.9967
245 D A -4.4018
246 E A -4.2862
247 D A -4.2608
248 D A -4.2501
249 E A -4.0282
250 D A -3.6803
251 G A -3.0193
252 D A -2.8958
253 E A -2.3329
254 V A -0.7344
255 E A -2.6566
256 E A -3.3547
257 E A -3.6109
258 A A -2.5150
259 E A -3.0805
260 E A -2.5534
261 P A -1.2751
262 Y A -0.4121
263 E A -2.1531
264 E A -2.4489
265 A A -1.9138
266 T A -1.7240
267 E A -2.8372
268 R A -2.8610
269 T A -1.5393
270 T A -0.3736
271 S A 0.7380
272 I A 1.9043
273 A A 0.9279
274 T A 0.3588
275 T A -0.1538
276 T A -0.1661
277 T A -0.1914
278 T A -0.2142
279 T A -0.5872
280 T A -1.0720
281 E A -2.2155
282 S A -1.3339
283 V A -0.3989
284 E A -2.4645
285 E A -3.1029
286 V A -1.4625
287 V A -1.6115
288 R A -3.0076
289 E A -3.4426
290 V A -2.2880
291 C A 0.0000
292 S A -1.6341
293 E A -2.4012
294 Q A -1.9854
295 A A -1.4357
296 E A -1.8310
297 T A -0.5169
298 G A -0.8564
299 P A -0.8391
300 C A -0.7182
301 R A -1.2379
302 A A 0.0743
303 M A 1.3598
304 I A 1.0809
305 S A 0.4943
306 R A -0.3822
307 W A -0.6953
308 Y A -0.7190
309 F A 0.0000
310 D A -0.9253
311 V A 0.0814
312 T A -0.5998
313 E A -2.0603
314 G A -1.3571
315 K A -1.8669
316 C A 0.0000
317 A A -0.8123
318 P A -0.2529
319 F A 0.8439
320 F A 1.6332
321 Y A 0.5900
322 G A 0.0000
323 G A -0.0966
324 C A -0.4354
325 G A -0.9724
326 G A -1.5648
327 N A -2.0037
328 R A -2.7484
329 N A 0.0000
330 N A -1.3780
331 F A 0.0000
332 D A -2.0880
333 T A -1.6305
334 E A -2.0528
335 E A -1.7927
336 Y A -0.1211
337 C A 0.0000
338 M A -0.3897
339 A A 0.1212
340 V A 0.4435
341 C A 0.0000
342 G A -0.2366
343 S A -0.2938
344 A A -0.8302
345 M A 0.1159
346 S A 0.0148
347 Q A -0.3290
348 S A 0.1943
349 L A 1.4871
350 L A 1.1740
351 K A -0.9384
352 T A -0.6492
353 T A -1.1569
354 Q A -2.3918
355 E A -2.2947
356 P A -0.8178
357 L A 0.5144
358 A A -0.5675
359 R A -2.2038
360 D A -2.5436
361 P A -0.9138
362 V A 0.4957
363 K A -0.4482
364 L A 1.0044
365 P A 0.1874
366 T A -0.0949
367 T A 0.0313
368 A A -0.0707
369 A A -0.1087
370 S A -0.3597
371 T A -0.6748
372 P A -1.4431
373 D A -1.6986
374 A A -2.0814
375 V A 0.0000
376 D A -2.2753
377 K A -2.6110
378 Y A 0.0000
379 L A -1.1464
380 E A -2.3888
381 T A -1.5857
382 P A -1.6112
383 G A -1.9685
384 D A -2.7635
385 E A -3.1964
386 N A -2.9316
387 E A 0.0000
388 H A -2.2727
389 A A -1.7526
390 H A -1.9544
391 F A 0.0000
392 Q A -2.1648
393 K A -2.5576
394 A A 0.0000
395 K A 0.0000
396 E A -3.4956
397 R A -3.6457
398 L A 0.0000
399 E A -3.2037
400 A A -2.9224
401 K A -2.8893
402 H A -3.1398
403 R A -3.6958
404 E A -3.6477
405 R A -2.7237
406 M A -2.4866
407 S A -2.4482
408 Q A -2.6676
409 V A 0.0000
410 M A -1.7314
411 R A -3.3670
412 E A -3.1093
413 W A -2.8762
414 E A -4.0144
415 E A -4.3746
416 A A -3.2311
417 E A -3.9242
418 R A -4.5742
419 Q A -3.7033
420 A A 0.0000
421 K A -3.5781
422 N A -2.8602
423 L A -1.9032
424 P A -2.0373
425 K A -2.9906
426 A A -2.0502
427 D A -2.4939
428 K A -3.0651
429 K A -2.8347
430 A A -1.8303
431 V A -1.3366
432 I A -1.3936
433 Q A -2.1955
434 H A -2.2204
435 F A -2.0518
436 Q A -2.7345
437 E A -3.6803
438 K A -3.0847
439 V A -2.8698
440 E A -3.9644
441 S A -3.0761
442 L A -2.8746
443 E A -3.5840
444 Q A -3.5202
445 E A -3.1658
446 A A -3.0704
447 A A -2.9286
448 N A -3.4141
449 E A -3.1427
450 R A -3.5198
451 Q A -3.3334
452 Q A -2.6412
453 L A 0.0000
454 V A -1.6547
455 E A -2.3379
456 T A -1.1252
457 H A 0.0000
458 M A -0.8044
459 A A -0.8576
460 R A -1.2316
461 V A 0.0000
462 E A -1.8675
463 A A -1.3256
464 M A -1.7102
465 L A -2.0286
466 N A -2.4806
467 D A -2.0086
468 R A -2.3999
469 R A -2.6454
470 R A -2.7300
471 L A -1.3394
472 A A 0.0000
473 L A -1.3159
474 E A -1.8207
475 N A -1.5290
476 Y A 0.0000
477 I A 0.1331
478 T A -0.4389
479 A A 0.0000
480 L A -0.4899
481 Q A -0.8048
482 A A 0.0469
483 V A 1.1118
484 P A 0.2533
485 P A -0.7498
486 R A -2.0216
487 P A -2.4423
488 R A -3.0675
489 H A -2.1854
490 V A 0.0000
491 F A -1.9908
492 N A -1.8720
493 M A -1.4338
494 L A 0.0000
495 K A -1.9308
496 K A -2.2262
497 Y A 0.0000
498 V A 0.0000
499 R A -2.4309
500 A A -2.2872
501 E A 0.0000
502 Q A 0.0000
503 K A -2.2965
504 D A 0.0000
505 R A -1.1287
506 Q A -1.2464
507 H A -1.5069
508 T A 0.0000
509 L A 0.0000
510 K A -1.5809
511 H A -1.0913
512 F A 0.0000
513 E A -0.6566
514 H A 0.2067
515 V A 0.0000
516 R A -0.2934
517 M A 1.4968
518 V A 1.6912
519 D A -0.3932
520 P A -1.2414
521 K A -2.6765
522 K A -2.5723
523 A A 0.0000
524 A A -1.7852
525 Q A -2.3128
526 I A -1.4333
527 R A -1.5121
528 S A -1.1484
529 Q A -1.7112
530 V A 0.0000
531 M A -0.5861
532 T A -0.8817
533 H A -0.7474
534 L A -0.5729
535 R A -1.4129
536 V A 0.0169
537 I A 0.0000
538 Y A -0.1666
539 E A -1.8060
540 R A -1.1395
541 M A -0.7283
542 N A -1.2605
543 Q A -1.7314
544 S A 0.0000
545 L A -0.3429
546 S A -0.2218
547 L A 0.2895
548 L A 0.0000
549 Y A 0.6210
550 N A -0.5919
551 V A -0.3371
552 P A -0.7135
553 A A -1.0081
554 V A 0.0000
555 A A -1.6048
556 E A -2.9606
557 E A -3.6051
558 I A 0.0000
559 Q A -3.3149
560 D A -4.1271
561 E A -3.9357
562 V A 0.0000
563 D A -3.0488
564 E A -3.8141
565 L A 0.0000
566 L A -1.9531
567 Q A -2.4075
568 K A -2.4774
569 E A 0.0000
570 Q A -1.7423
571 N A -2.1892
572 Y A -0.6015
573 S A 0.0000
574 D A -2.7870
575 D A -2.7560
576 V A -1.4915
577 L A -0.9994
578 A A -1.3785
579 N A -1.8971
580 M A 0.0000
581 I A 0.5455
582 S A -0.8527
583 E A -1.4878
584 P A -1.2127
585 R A -1.1762
586 I A 1.0947
587 S A 0.4783
588 Y A 0.7164
589 G A -0.7929
590 N A -1.5996
591 D A -1.7300
592 A A -0.1608
593 L A 1.2681
594 M A 1.3899
595 P A 0.8716
596 S A 0.8116
597 L A 1.1025
598 T A -0.2624
599 E A -1.9744
600 T A -1.8267
601 K A -2.2075
602 T A -0.9168
603 T A -0.0439
604 V A 1.0299
605 E A 0.2302
606 L A 1.7689
607 L A 2.1705
608 P A 1.5156
609 V A 1.0504
610 N A -1.0020
611 G A -1.2343
612 E A -1.2993
613 F A 1.0795
614 S A 0.6659
615 L A 0.8637
616 D A -1.7126
617 D A -2.0613
618 L A -0.4204
619 Q A -1.0306
620 P A -0.3215
621 W A 0.2163
622 H A -0.1904
623 S A 0.3186
624 F A 1.4224
625 G A 0.0990
626 A A -0.6570
627 D A -1.6152
628 S A -0.2963
629 V A 1.2033
630 P A 0.3148
631 A A -0.3474
632 N A -1.7291
633 T A -1.9152
634 E A -3.1550
635 N A -2.8410
636 E A -2.4666
637 V A -0.2828
638 E A -1.1061
639 P A -0.3474
640 V A 0.4212
641 D A -1.3387
642 A A -1.5028
643 R A -2.2977
644 P A -1.0809
645 A A -0.8038
646 A A -1.3822
647 D A -2.7070
648 R A -2.5919
649 G A -1.0167
650 L A 0.8853
651 T A 0.1913
652 T A -0.8909
653 R A -2.1047
654 P A -1.4040
655 G A -1.1464
656 S A -0.4068
657 G A 0.1500
658 L A 0.9224
659 T A 0.4535
660 N A -0.3964
661 I A 0.5390
662 K A -1.4876
663 T A -1.9336
664 E A -2.6901
665 E A -1.8048
666 I A 0.4782
667 S A -0.3039
668 E A -0.9885
669 V A 0.3158
670 K A -1.2649
671 M A -0.5908
672 D A -1.7904
673 A A -1.3977
674 E A -1.7828
675 F A -0.4781
676 R A -2.1662
677 H A -2.6439
678 D A -2.5969
679 S A -1.4159
680 G A -0.7534
681 Y A 0.3294
682 E A -1.1036
683 V A 0.0476
684 H A -1.7605
685 H A -2.5126
686 Q A -1.8513
687 K A -1.4262
688 L A 1.9681
689 V A 3.3836
690 F A 3.8074
691 F A 2.9153
692 A A 0.7146
693 E A -1.5355
694 D A -1.6339
695 V A 0.0068
696 G A -0.6743
697 S A -1.3192
698 N A -1.9951
699 K A -1.7443
700 G A -0.1825
701 A A 1.0728
702 I A 2.7369
703 I A 3.0030
704 G A 2.0837
705 L A 3.5276
706 M A 3.7050
707 V A 4.1140
708 G A 3.0205
709 G A 2.9111
710 V A 4.1798
711 V A 4.4801
712 I A 4.6146
713 A A 3.8414
714 T A 3.9318
715 V A 4.8169
716 I A 5.2453
717 V A 5.0536
718 I A 4.4785
719 T A 3.1724
720 L A 3.1861
721 V A 1.9759
722 M A 1.1246
723 L A 0.2451
724 K A -1.5657
725 K A -2.3550
726 K A -2.5714
727 Q A -2.0398
728 Y A -0.2838
729 T A -0.0723
730 S A 0.5150
731 I A 1.2708
732 H A -0.4955
733 H A -0.6176
734 G A 0.1698
735 V A 1.8133
736 V A 1.7671
737 E A -0.1519
738 V A 0.8102
739 D A -0.9087
740 A A -0.3062
741 A A 0.2239
742 V A -0.0079
743 T A -1.0832
744 P A -1.7731
745 E A -3.0044
746 E A -2.6082
747 R A -2.8061
748 H A -2.7870
749 L A -1.1413
750 S A -2.3042
751 K A -3.0763
752 M A -1.4477
753 Q A -2.2492
754 Q A -2.6198
755 N A -2.7399
756 G A -1.9037
757 Y A -1.0104
758 E A -2.3620
759 N A -1.7619
760 P A -0.7930
761 T A -0.0852
762 Y A 0.0870
763 K A -1.2488
764 F A 0.8780
765 F A 0.6680
766 E A -1.5379
767 Q A -1.4011
768 M A -0.3527
769 Q A -1.6708
770 N A -2.0608
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Calculations for various pH values

This page contains details and comparisons for all models calculated at different pH points.
Please find suggestions on interpreting the results below. More details can be found in the Tutorial.
The input structure is partially or entirely disordered. Average score is recommended for pH analysis.

pH
Average A4D Score
Max A4D Score
4.0 -0.4477 7.1511 View CSV PDB
4.5 -0.5721 7.1112 View CSV PDB
5.0 -0.7338 7.0667 View CSV PDB
5.5 -0.904 7.0315 View CSV PDB
6.0 -1.0537 7.0202 View CSV PDB
6.5 -1.1613 7.0399 View CSV PDB
7.0 -1.2197 7.0838 View CSV PDB
7.5 -1.2391 7.1403 View CSV PDB
8.0 -1.2355 7.2015 View CSV PDB
8.5 -1.2172 7.2641 View CSV PDB
9.0 -1.1852 7.3261 View CSV PDB