| Chain sequence(s) |
A: MLSDEDFKAVFGMTRSAFANLPLWKQQNLKKEKGLF
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | No |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:01)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:00:01)
[INFO] Main: Simulation completed successfully. (00:00:02)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 41 | M | A | 0.9357 | |
| 42 | L | A | -0.5788 | |
| 43 | S | A | -2.2275 | |
| 44 | D | A | -3.6196 | |
| 45 | E | A | -4.1398 | |
| 46 | D | A | -3.3597 | |
| 47 | F | A | 0.0000 | |
| 48 | K | A | -3.2768 | |
| 49 | A | A | -1.7990 | |
| 50 | V | A | -1.0723 | |
| 51 | F | A | -0.8158 | |
| 52 | G | A | -0.5921 | |
| 53 | M | A | 0.0953 | |
| 54 | T | A | -1.1338 | |
| 55 | R | A | -1.4657 | |
| 56 | S | A | -0.8011 | |
| 57 | A | A | -0.5485 | |
| 58 | F | A | 0.0000 | |
| 59 | A | A | -0.6900 | |
| 60 | N | A | -1.0126 | |
| 61 | L | A | 0.2367 | |
| 62 | P | A | 0.5438 | |
| 63 | L | A | 1.4223 | |
| 64 | W | A | 1.0547 | |
| 65 | K | A | -0.3159 | |
| 66 | Q | A | -1.0494 | |
| 67 | Q | A | -1.9398 | |
| 68 | N | A | -2.5948 | |
| 69 | L | A | -1.7986 | |
| 70 | K | A | -2.5207 | |
| 71 | K | A | -3.0545 | |
| 72 | E | A | -3.1569 | |
| 73 | K | A | -1.6152 | |
| 74 | G | A | -0.3092 | |
| 75 | L | A | 1.1125 | |
| 76 | F | A | 1.9181 |