Chain sequence(s) |
A: MQYYETREKEYYDVAQGQSRQSYGQNHQGYGQSQSRPVYGNSPTLNYRSHGGFLDGLFKGKNGQKGQNGLGSFLGQHKNQDTNQGHGHGKLLGQHQKKTHETNKGVNGLGMFINNGEKKHKKQNEHKKKKNKDGHASGNESGSSSGSDSE
input PDB |
Selected Chain(s) | A |
Distance of aggregation | 10 Å |
FoldX usage | No |
pH calculations | No |
alphaCutter usage | No |
Dynamic mode | No |
Automated mutations | No |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:01) [INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:00:01) [INFO] Main: Simulation completed successfully. (00:00:02) |
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan4D score | mutation |
---|---|---|---|---|
1 | M | A | 0.9170 | |
2 | Q | A | 0.0127 | |
3 | Y | A | 1.1812 | |
4 | Y | A | 0.6182 | |
5 | E | A | -1.7106 | |
6 | T | A | -2.1614 | |
7 | R | A | -3.6831 | |
8 | E | A | -4.0052 | |
9 | K | A | -3.3767 | |
10 | E | A | -2.7149 | |
11 | Y | A | 0.1434 | |
12 | Y | A | 0.8955 | |
13 | D | A | -0.4318 | |
14 | V | A | 1.0887 | |
15 | A | A | 0.0149 | |
16 | Q | A | -1.4524 | |
17 | G | A | -1.4319 | |
18 | Q | A | -2.2050 | |
19 | S | A | -2.1484 | |
20 | R | A | -2.8532 | |
21 | Q | A | -2.0246 | |
22 | S | A | -0.8656 | |
23 | Y | A | 0.4430 | |
24 | G | A | -1.0195 | |
25 | Q | A | -2.0017 | |
26 | N | A | -2.8216 | |
27 | H | A | -2.5496 | |
28 | Q | A | -1.9733 | |
29 | G | A | -1.0858 | |
30 | Y | A | 0.1713 | |
31 | G | A | -0.8778 | |
32 | Q | A | -1.5839 | |
33 | S | A | -1.6060 | |
34 | Q | A | -2.2672 | |
35 | S | A | -1.7226 | |
36 | R | A | -1.7816 | |
37 | P | A | -0.4084 | |
38 | V | A | 1.4145 | |
39 | Y | A | 1.3249 | |
40 | G | A | -0.0014 | |
41 | N | A | -1.0984 | |
42 | S | A | -0.6227 | |
43 | P | A | -0.4388 | |
44 | T | A | 0.1441 | |
45 | L | A | 0.9226 | |
46 | N | A | -0.5632 | |
47 | Y | A | 0.0610 | |
48 | R | A | -1.8106 | |
49 | S | A | -1.6779 | |
50 | H | A | -1.7027 | |
51 | G | A | -0.9791 | |
52 | G | A | 0.2443 | |
53 | F | A | 2.0612 | |
54 | L | A | 2.2389 | |
55 | D | A | -0.2259 | |
56 | G | A | 0.1639 | |
57 | L | A | 1.9174 | |
58 | F | A | 1.2657 | |
59 | K | A | -1.6282 | |
60 | G | A | -1.9878 | |
61 | K | A | -2.7985 | |
62 | N | A | -3.3168 | |
63 | G | A | -3.1467 | |
64 | Q | A | -3.2257 | |
65 | K | A | -3.2158 | |
66 | G | A | -2.6843 | |
67 | Q | A | -2.5566 | |
68 | N | A | -2.0336 | |
69 | G | A | -0.8956 | |
70 | L | A | 0.7949 | |
71 | G | A | 0.5944 | |
72 | S | A | 1.1715 | |
73 | F | A | 2.3604 | |
74 | L | A | 1.7223 | |
75 | G | A | -0.1974 | |
76 | Q | A | -1.7800 | |
77 | H | A | -2.8844 | |
78 | K | A | -3.4870 | |
79 | N | A | -3.4829 | |
80 | Q | A | -3.3808 | |
81 | D | A | -2.9912 | |
82 | T | A | -2.3583 | |
83 | N | A | -2.6369 | |
84 | Q | A | -2.3727 | |
85 | G | A | -2.0883 | |
86 | H | A | -2.1777 | |
87 | G | A | -2.0438 | |
88 | H | A | -2.0340 | |
89 | G | A | -1.3687 | |
90 | K | A | -1.1384 | |
91 | L | A | 0.9401 | |
92 | L | A | 1.1178 | |
93 | G | A | -0.4093 | |
94 | Q | A | -1.5851 | |
95 | H | A | -2.6892 | |
96 | Q | A | -3.2342 | |
97 | K | A | -3.3309 | |
98 | K | A | -3.1463 | |
99 | T | A | -2.2513 | |
100 | H | A | -2.4457 | |
101 | E | A | -2.9269 | |
102 | T | A | -2.3210 | |
103 | N | A | -2.6247 | |
104 | K | A | -2.4074 | |
105 | G | A | -1.1059 | |
106 | V | A | 0.3497 | |
107 | N | A | -0.3564 | |
108 | G | A | 0.0910 | |
109 | L | A | 1.4276 | |
110 | G | A | 1.3028 | |
111 | M | A | 2.5313 | |
112 | F | A | 2.9460 | |
113 | I | A | 2.1513 | |
114 | N | A | -0.8569 | |
115 | N | A | -2.0433 | |
116 | G | A | -2.8901 | |
117 | E | A | -4.1152 | |
118 | K | A | -4.4645 | |
119 | K | A | -4.4066 | |
120 | H | A | -4.2016 | |
121 | K | A | -4.3158 | |
122 | K | A | -4.3467 | |
123 | Q | A | -3.9699 | |
124 | N | A | -3.9607 | |
125 | E | A | -4.1786 | |
126 | H | A | -3.8678 | |
127 | K | A | -4.3188 | |
128 | K | A | -4.4752 | |
129 | K | A | -4.5086 | |
130 | K | A | -4.5493 | |
131 | N | A | -4.1930 | |
132 | K | A | -4.2026 | |
133 | D | A | -3.6599 | |
134 | G | A | -2.6169 | |
135 | H | A | -2.0077 | |
136 | A | A | -1.2472 | |
137 | S | A | -1.2671 | |
138 | G | A | -1.9486 | |
139 | N | A | -2.5540 | |
140 | E | A | -2.9190 | |
141 | S | A | -1.8079 | |
142 | G | A | -1.5435 | |
143 | S | A | -0.9794 | |
144 | S | A | -0.7242 | |
145 | S | A | -0.9304 | |
146 | G | A | -1.1378 | |
147 | S | A | -1.5224 | |
148 | D | A | -2.5031 | |
149 | S | A | -2.0325 | |
150 | E | A | -2.2884 |