| Chain sequence(s) |
D: TSSSTKKTQLQLEHLLLDLQMILNGINNYKNPKLTRMLTFKFYMPKKATELKHLQCLEEELKPLEEVLNLAQSKNFHLRPRDLISNINVIVLELKGSETTFMCEYADETATIVEFLNRWITFAQSIISTLT
input PDB |
| Selected Chain(s) | D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| pH calculations | No |
| alphaCutter usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | LM132D,LK19D |
| Energy difference between WT (input) and mutated protein (by FoldX) | 0.927794 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with D chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimization (00:00:00)
[INFO] FoldX: Building mutant model (00:02:37)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:03:03)
[INFO] Main: Simulation completed successfully. (00:03:04)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 3 | T | D | -0.7168 | |
| 4 | S | D | -1.1143 | |
| 5 | S | D | -1.5333 | |
| 6 | S | D | -1.5309 | |
| 7 | T | D | -1.5485 | |
| 8 | K | D | -2.5603 | |
| 9 | K | D | -2.6606 | |
| 10 | T | D | -1.8171 | |
| 11 | Q | D | -1.5095 | |
| 12 | L | D | -1.0865 | |
| 13 | Q | D | -1.6012 | |
| 14 | L | D | 0.0000 | |
| 15 | E | D | -2.0436 | |
| 16 | H | D | -2.0835 | |
| 17 | L | D | 0.0000 | |
| 18 | L | D | 0.0000 | |
| 19 | K | D | -2.4179 | mutated: LK19D |
| 20 | D | D | -1.4384 | |
| 21 | L | D | 0.0000 | |
| 22 | Q | D | -1.3482 | |
| 23 | M | D | -0.6852 | |
| 24 | I | D | 0.0000 | |
| 25 | L | D | -1.0728 | |
| 26 | N | D | -1.4222 | |
| 27 | G | D | 0.0000 | |
| 28 | I | D | 0.0000 | |
| 29 | N | D | -1.3649 | |
| 30 | N | D | -1.1192 | |
| 31 | Y | D | 0.0366 | |
| 32 | K | D | -1.5815 | |
| 33 | N | D | 0.0000 | |
| 34 | P | D | -1.1789 | |
| 35 | K | D | -1.5016 | |
| 36 | L | D | -0.9371 | |
| 37 | T | D | -1.0202 | |
| 38 | R | D | -1.7508 | |
| 39 | M | D | 0.0000 | |
| 40 | L | D | -0.4053 | |
| 41 | T | D | -0.5029 | |
| 42 | F | D | -0.4613 | |
| 43 | K | D | -1.2913 | |
| 44 | F | D | 0.0000 | |
| 45 | Y | D | -0.3705 | |
| 46 | M | D | 0.0000 | |
| 47 | P | D | 0.0000 | |
| 48 | K | D | -3.0665 | |
| 49 | K | D | -2.9105 | |
| 50 | A | D | -2.1325 | |
| 51 | T | D | -1.5270 | |
| 52 | E | D | -2.3981 | |
| 53 | L | D | -1.5558 | |
| 54 | K | D | -1.9901 | |
| 55 | H | D | -1.8321 | |
| 56 | L | D | 0.0000 | |
| 57 | Q | D | -0.9277 | |
| 58 | C | D | 0.0000 | |
| 59 | L | D | 0.0000 | |
| 60 | E | D | -1.3797 | |
| 61 | E | D | -2.2643 | |
| 62 | E | D | 0.0000 | |
| 63 | L | D | 0.0000 | |
| 64 | K | D | -2.8125 | |
| 65 | P | D | -1.9596 | |
| 66 | L | D | 0.0000 | |
| 67 | E | D | -2.6907 | |
| 68 | E | D | -2.6160 | |
| 69 | V | D | 0.0000 | |
| 70 | L | D | 0.0000 | |
| 71 | N | D | -1.8532 | |
| 72 | L | D | -0.5475 | |
| 73 | A | D | -0.9606 | |
| 74 | Q | D | -1.3992 | |
| 75 | S | D | -1.8527 | |
| 76 | K | D | -2.3758 | |
| 77 | N | D | -2.0793 | |
| 78 | F | D | -0.7496 | |
| 79 | H | D | -1.8367 | |
| 80 | L | D | -1.7327 | |
| 81 | R | D | -3.0913 | |
| 82 | P | D | 0.0000 | |
| 83 | R | D | -3.5359 | |
| 84 | D | D | -3.3533 | |
| 85 | L | D | 0.0000 | |
| 86 | I | D | 0.0000 | |
| 87 | S | D | -1.2735 | |
| 88 | N | D | -1.0192 | |
| 89 | I | D | 0.0000 | |
| 90 | N | D | -0.1172 | |
| 91 | V | D | 1.2696 | |
| 92 | I | D | 0.2254 | |
| 93 | V | D | 0.0000 | |
| 94 | L | D | 0.1638 | |
| 95 | E | D | -1.1381 | |
| 96 | L | D | 0.0000 | |
| 97 | K | D | -1.6719 | |
| 98 | G | D | -1.5349 | |
| 99 | S | D | -1.6031 | |
| 100 | E | D | -2.1723 | |
| 101 | T | D | -1.0010 | |
| 102 | T | D | -0.4928 | |
| 103 | F | D | -0.0249 | |
| 104 | M | D | 0.8140 | |
| 105 | C | D | -0.6980 | |
| 106 | E | D | -1.5731 | |
| 107 | Y | D | -1.2611 | |
| 108 | A | D | -2.1752 | |
| 109 | D | D | -2.7953 | |
| 110 | E | D | -2.7924 | |
| 111 | T | D | -1.5131 | |
| 112 | A | D | 0.0000 | |
| 113 | T | D | -0.6219 | |
| 114 | I | D | 0.0000 | |
| 115 | V | D | -1.0896 | |
| 116 | E | D | -1.9681 | |
| 117 | F | D | 0.0000 | |
| 118 | L | D | 0.0000 | |
| 119 | N | D | -1.7038 | |
| 120 | R | D | -1.6022 | |
| 121 | W | D | 0.0000 | |
| 122 | I | D | -1.1983 | |
| 123 | T | D | -0.7753 | |
| 124 | F | D | 0.0000 | |
| 125 | A | D | 0.0000 | |
| 126 | Q | D | -1.1148 | |
| 127 | S | D | -0.7159 | |
| 128 | I | D | -0.4739 | |
| 129 | I | D | -0.4526 | |
| 130 | S | D | -0.3646 | |
| 131 | T | D | -0.1489 | |
| 132 | M | D | -0.3151 | mutated: LM132D |
| 133 | T | D | -0.2999 |