Chain sequence(s) |
A: MQRVKNMTETLKFVYILILFIFIFLVLMVCDSAFIQLSKPCISDKECSIVKNYRARCRKGYCVRRRIR
input PDB |
Selected Chain(s) | A |
Distance of aggregation | 10 Å |
FoldX usage | No |
pH calculations | No |
alphaCutter usage | No |
Dynamic mode | No |
Automated mutations | No |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:00) [INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:00:00) [INFO] Main: Simulation completed successfully. (00:00:01) |
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan4D score | mutation |
---|---|---|---|---|
1 | M | A | -0.0662 | |
2 | Q | A | -1.7536 | |
3 | R | A | -1.9358 | |
4 | V | A | -0.2888 | |
5 | K | A | -2.3242 | |
6 | N | A | -2.3469 | |
7 | M | A | -0.2884 | |
8 | T | A | -0.6518 | |
9 | E | A | -1.3618 | |
10 | T | A | 0.4840 | |
11 | L | A | 1.9970 | |
12 | K | A | 0.9832 | |
13 | F | A | 3.4732 | |
14 | V | A | 4.2075 | |
15 | Y | A | 4.6818 | |
16 | I | A | 5.7523 | |
17 | L | A | 5.8415 | |
18 | I | A | 6.1527 | |
19 | L | A | 6.6777 | |
20 | F | A | 6.9446 | |
21 | I | A | 7.3136 | |
22 | F | A | 7.3372 | |
23 | I | A | 7.0846 | |
24 | F | A | 7.0275 | |
25 | L | A | 6.6127 | |
26 | V | A | 5.9912 | |
27 | L | A | 5.1631 | |
28 | M | A | 4.3535 | |
29 | V | A | 4.3939 | |
30 | C | A | 2.9997 | |
31 | D | A | 1.4475 | |
32 | S | A | 1.7914 | |
33 | A | A | 1.9761 | |
34 | F | A | 2.7618 | |
35 | I | A | 2.3677 | |
36 | Q | A | 0.4713 | |
37 | L | A | 1.8446 | |
38 | S | A | 0.8719 | |
39 | K | A | -0.8086 | |
40 | P | A | -0.5254 | |
41 | C | A | 0.0000 | |
42 | I | A | 0.7346 | |
43 | S | A | -1.1121 | |
44 | D | A | -2.8286 | |
45 | K | A | -2.5683 | |
46 | E | A | -1.9584 | |
47 | C | A | 0.0000 | |
48 | S | A | -0.7893 | |
49 | I | A | 0.3098 | |
50 | V | A | -0.5767 | |
51 | K | A | -1.7110 | |
52 | N | A | -2.4278 | |
53 | Y | A | -2.3749 | |
54 | R | A | -2.9156 | |
55 | A | A | -2.6341 | |
56 | R | A | -3.2755 | |
57 | C | A | -2.3491 | |
58 | R | A | -2.5039 | |
59 | K | A | -2.2095 | |
60 | G | A | -1.1644 | |
61 | Y | A | -0.6671 | |
62 | C | A | -1.7851 | |
63 | V | A | -1.6364 | |
64 | R | A | -2.7759 | |
65 | R | A | -3.7130 | |
66 | R | A | -3.3645 | |
67 | I | A | -1.3114 | |
68 | R | A | -1.7433 |