| Chain sequence(s) |
A: MPSACANGWIQYDKHCYLDTNIKMSTDNAVYQCRKLRARLPRPDTRHLRVLFSIFYKDYWVSLKKTNDKWLDINNDKDIDISKLTNFKQLNSTTDSEACYIYKSGKLVKTVCKSTQSVLCVKRFYK
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| pH calculations | No |
| alphaCutter usage | Used: no changes made |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | KR109A |
| Energy difference between WT (input) and mutated protein (by FoldX) | 0.102536 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] PDB: Running AlphaCutter (00:00:01)
[INFO] PDB: AlphaCutter did not cut any residues. The original structure will be used
for analysis. (00:00:08)
[INFO] FoldX: Starting FoldX energy minimization (00:00:08)
[INFO] FoldX: Building mutant model (00:04:20)
[INFO] Analysis: Starting Aggrescan4D on folded.pdb (00:04:34)
[INFO] Main: Simulation completed successfully. (00:04:35)
|
The table below lists A4D score for protein residues. Residues with A4D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan4D score | mutation |
|---|---|---|---|---|
| 1 | M | A | 0.8793 | |
| 2 | P | A | 0.1633 | |
| 3 | S | A | -0.1407 | |
| 4 | A | A | -0.6009 | |
| 5 | C | A | 0.0000 | |
| 6 | A | A | -0.4474 | |
| 7 | N | A | -1.3185 | |
| 8 | G | A | -0.9380 | |
| 9 | W | A | -0.3630 | |
| 10 | I | A | 0.1448 | |
| 11 | Q | A | -1.3915 | |
| 12 | Y | A | -0.8761 | |
| 13 | D | A | -1.8949 | |
| 14 | K | A | -2.5551 | |
| 15 | H | A | -1.8901 | |
| 16 | C | A | 0.0000 | |
| 17 | Y | A | 0.0000 | |
| 18 | L | A | -0.1582 | |
| 19 | D | A | -0.1174 | |
| 20 | T | A | -0.4089 | |
| 21 | N | A | -0.8271 | |
| 22 | I | A | 0.2553 | |
| 23 | K | A | -1.3065 | |
| 24 | M | A | -1.3831 | |
| 25 | S | A | -1.6270 | |
| 26 | T | A | 0.0000 | |
| 27 | D | A | -2.1787 | |
| 28 | N | A | -2.0554 | |
| 29 | A | A | 0.0000 | |
| 30 | V | A | 0.0000 | |
| 31 | Y | A | -0.9767 | |
| 32 | Q | A | -1.2820 | |
| 33 | C | A | 0.0000 | |
| 34 | R | A | -2.8194 | |
| 35 | K | A | -2.6115 | |
| 36 | L | A | -1.8170 | |
| 37 | R | A | -3.0859 | |
| 38 | A | A | 0.0000 | |
| 39 | R | A | -2.4112 | |
| 40 | L | A | 0.0000 | |
| 41 | P | A | 0.0000 | |
| 42 | R | A | -1.2188 | |
| 43 | P | A | 0.0000 | |
| 44 | D | A | -1.6121 | |
| 45 | T | A | -1.5332 | |
| 46 | R | A | -2.3277 | |
| 47 | H | A | 0.0000 | |
| 48 | L | A | 0.0000 | |
| 49 | R | A | -2.0067 | |
| 50 | V | A | -0.1483 | |
| 51 | L | A | 0.0000 | |
| 52 | F | A | 0.7959 | |
| 53 | S | A | 0.7293 | |
| 54 | I | A | 1.2840 | |
| 55 | F | A | 1.3249 | |
| 56 | Y | A | 1.6096 | |
| 57 | K | A | 0.0621 | |
| 58 | D | A | -0.8210 | |
| 59 | Y | A | 0.0000 | |
| 60 | W | A | 0.0000 | |
| 61 | V | A | 0.0000 | |
| 62 | S | A | 0.0000 | |
| 63 | L | A | 0.0000 | |
| 64 | K | A | -1.4947 | |
| 65 | K | A | -2.5324 | |
| 66 | T | A | -2.7171 | |
| 67 | N | A | -3.2667 | |
| 68 | D | A | -3.3641 | |
| 69 | K | A | -3.6649 | |
| 70 | W | A | -2.8507 | |
| 71 | L | A | -2.6472 | |
| 72 | D | A | 0.0000 | |
| 73 | I | A | 0.0000 | |
| 74 | N | A | -1.9840 | |
| 75 | N | A | -2.6937 | |
| 76 | D | A | -3.4295 | |
| 77 | K | A | -3.9695 | |
| 78 | D | A | -3.7343 | |
| 79 | I | A | -2.7298 | |
| 80 | D | A | -2.8656 | |
| 81 | I | A | 0.0000 | |
| 82 | S | A | -1.9114 | |
| 83 | K | A | -2.2354 | |
| 84 | L | A | 0.0000 | |
| 85 | T | A | -1.0915 | |
| 86 | N | A | -1.5652 | |
| 87 | F | A | -1.8462 | |
| 88 | K | A | -2.6164 | |
| 89 | Q | A | -2.6686 | |
| 90 | L | A | 0.0000 | |
| 91 | N | A | -2.2487 | |
| 92 | S | A | -1.6957 | |
| 93 | T | A | -1.7466 | |
| 94 | T | A | -1.2060 | |
| 95 | D | A | -1.9520 | |
| 96 | S | A | -2.4720 | |
| 97 | E | A | -2.8681 | |
| 98 | A | A | 0.0000 | |
| 99 | C | A | 0.0000 | |
| 100 | Y | A | 0.0000 | |
| 101 | I | A | 0.0000 | |
| 102 | Y | A | 0.0000 | |
| 103 | K | A | -1.8490 | |
| 104 | S | A | -1.3322 | |
| 105 | G | A | -1.5599 | |
| 106 | K | A | -2.1067 | |
| 107 | L | A | 0.0000 | |
| 108 | V | A | -1.3380 | |
| 109 | R | A | -1.7737 | mutated: KR109A |
| 110 | T | A | -0.3603 | |
| 111 | V | A | 0.5991 | |
| 112 | C | A | -0.7898 | |
| 113 | K | A | -1.5736 | |
| 114 | S | A | -0.5596 | |
| 115 | T | A | -0.7748 | |
| 116 | Q | A | -0.7966 | |
| 117 | S | A | 0.0000 | |
| 118 | V | A | 0.0000 | |
| 119 | L | A | 0.0000 | |
| 120 | C | A | 0.0000 | |
| 121 | V | A | 0.0000 | |
| 122 | K | A | -1.9621 | |
| 123 | R | A | -2.5917 | |
| 124 | F | A | -1.1193 | |
| 125 | Y | A | -0.0584 | |
| 126 | K | A | -1.1804 |